Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0014743

Physical Location & Seq

Genomic Coordinates Reverse (-)

2151347 .. 2152532

Gene Structure 1186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G002600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCTACTCACCCAAATCCCCAAAAACCAGTCATGGCAAACCGCACCACCCACCGGCGCATTCTAGCAACACCAGAGCCAGAACCAGAACCAGAACCAGAACCACCAAGGCAGCAGACCAAACCCTCCACTCCTTTAGATCCCACCATGCCCTCTAAACCCTCTTCTAGGCTAAACCCAAATCACAGAATCCGTACAGCTCAAAAGCCACTTCCAAGTTTTGTACACACCAACAATGTTGAGAAACAGAGTAAAGAGAAGCTGCCCAATAGAGAAGTGAATAAGAAGAAAGTTGAGGAGGTGGTGGTGAAGATGGAATTGATGGGTGTCAAAGAAGAAGAGCATGAAGAAAAAGAGTATGAAAGTAGGAGACTTTCTACTTCTTCTTCTTCTTCAAATTCTTTGGGTGGAAGAAGGAAGTCCTTTTGTGGGTCAGGACAGGTTCAATTGAATAGGTTGGCTGATGTGTTTGCAAGCAATGGTGTGAAAGTGGTTTCAGTTGATATGCCTCCATTTATGCAGATCCATGCTGTGGAATGCGCAAGAAAGACTTGTGATAGCTTAGAAAAATTCACCTCCAAGACTCTAGCTTTGACTCTCAAAAAGGAATTTGATGGGGTATATGGACCAGCATGGCACTGCATTGTAGGAACAAGTTTTGGGTCTTTTGTGACACACTCAGTAAGTGGCTTTATGTATTTCTCAATGGATCAAAAGTTGTACATCCTCTTGTTTAAGACCACAGTACAAAGAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

253

Amino Acids

28.51

Weight (kDa)

9.39

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	162 - 247	2.1e-27	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014743)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15920 FvH4_5g15920 FvH4_5g15920
malus_domestica	MD06G1184500.v1.1 MD14G1190400.v1.1
prunus_persica	Prupe.5G183300_v2.0.a1 Prupe.5G183300_v2.0.a1
pyrus_communis	pycom06g16370 pycom14g15810
rosa_chinensis	RchiOBHm_Chr1g0349921 RchiOBHm_Chr7g0180131
rosa_laevigata	RLG00000005290
rosa_roxburghii	Rroxscaffold_3G00273100
rosa_rugosa	Rorug06G0430700
rosa_samantha	Rh7BG031200 Rh7CG033100
rosa_wichuraiana	Rw7G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	541
AccB7I	CCANNNNNTGG	1 cut(s)	532
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	3 cut(s)	134, 517, 717
AcsI	RAATTY	3 cut(s)	397, 569, 608
AfaI	GTAC	4 cut(s)	196, 225, 722, 747
AfiI	CCNNNNNNNGG	4 cut(s)	54, 168, 429, 532
AgsI	TTSAA	3 cut(s)	396, 446, 451
AluBI	AGCT	4 cut(s)	200, 262, 561, 590
AluI	AGCT	4 cut(s)	200, 262, 561, 590
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	3 cut(s)	134, 517, 717
ApeKI	GCWGC	2 cut(s)	112, 262
ApoI	RAATTY	3 cut(s)	397, 569, 608
ArsI	GACNNNNNNTTYG	2 cut(s)	574, 606
AspLEI	GCGC	2 cut(s)	60, 542
AspS9I	GGNCC	1 cut(s)	626
AsuHPI	GGTGA	2 cut(s)	319, 565
AvaII	GGWCC	1 cut(s)	626
BbvI	GCAGC	2 cut(s)	124, 249
BccI	CCATC	3 cut(s)	307, 316, 608
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	3 cut(s)	65, 168, 587
BisI	GCNGC	2 cut(s)	113, 263
BlsI	GCNGC	2 cut(s)	114, 264
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	626
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 168, 429, 532
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	484
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	723
BseLI	CCNNNNNNNGG	4 cut(s)	54, 168, 429, 532
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	124, 249
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	4 cut(s)	54, 168, 429, 532
BsmAI	GTCTC	1 cut(s)	364
BsmI	GAATGC	2 cut(s)	60, 542
Bsp1407I	TGTACA	2 cut(s)	223, 720
Bsp143I	GATC	3 cut(s)	139, 522, 709
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	692
BspPI	GGATC	3 cut(s)	134, 517, 717
BspQI	GCTCTTC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	484
BsrFI	RCCGGY	1 cut(s)	54
BsrGI	TGTACA	2 cut(s)	223, 720
BsrI	ACTGG	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	3 cut(s)	139, 522, 709
BssT1I	CCWWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	745
Bst6I	CTCTTC	2 cut(s)	169, 333
BstAUI	TGTACA	2 cut(s)	223, 720
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	2 cut(s)	562, 679
BstENI	CCTNNNNNAGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	723
BstHHI	GCGC	2 cut(s)	60, 542
BstKTI	GATC	3 cut(s)	142, 525, 712
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	3 cut(s)	139, 522, 709
BstV1I	GCAGC	2 cut(s)	124, 249
BstX2I	RGATCY	2 cut(s)	139, 522
BstYI	RGATCY	2 cut(s)	139, 522
BtsCI	GGATG	1 cut(s)	723
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	475
CfoI	GCGC	2 cut(s)	60, 542
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	626
Csp6I	GTAC	4 cut(s)	195, 224, 721, 746
CviAII	CATG	5 cut(s)	34, 148, 344, 527, 633
CviJI	RGCY	9 cut(s)	79, 172, 200, 208, 262, 461, 561, 590, 690
CviKI_1	RGCY	9 cut(s)	79, 172, 200, 208, 262, 461, 561, 590, 690
CviQI	GTAC	4 cut(s)	195, 224, 721, 746
DdeI	CTNAG	2 cut(s)	562, 679
DpnI	GATC	3 cut(s)	141, 524, 711
DpnII	GATC	3 cut(s)	139, 522, 709
Eam1104I	CTCTTC	2 cut(s)	169, 333
EarI	CTCTTC	2 cut(s)	169, 333
Eco130I	CCWWGG	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	626
EcoNI	CCTNNNNNAGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	5 cut(s)	37, 151, 347, 530, 636
FalI	AAGNNNNNCTT	2 cut(s)	535, 567
FatI	CATG	5 cut(s)	33, 147, 343, 526, 632
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	113, 263
FokI	GGATG	1 cut(s)	710
Fsp4HI	GCNGC	2 cut(s)	113, 263
FspBI	CTAG	3 cut(s)	65, 168, 587
FspI	TGCGCA	1 cut(s)	541
GlaI	GCGC	2 cut(s)	59, 541
GluI	GCNGC	2 cut(s)	113, 263
HapII	CCGG	1 cut(s)	55
HhaI	GCGC	2 cut(s)	60, 542
Hin1II	CATG	5 cut(s)	37, 151, 347, 530, 636
Hin6I	GCGC	2 cut(s)	58, 540
HinP1I	GCGC	2 cut(s)	58, 540
HinfI	GANTC	3 cut(s)	189, 583, 595
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	2 cut(s)	319, 565
Hpy166II	GTNNAC	2 cut(s)	6, 226
Hpy188III	TCNNGA	1 cut(s)	435
Hpy8I	GTNNAC	2 cut(s)	6, 226
HpyAV	CCTTC	1 cut(s)	408
HpyCH4III	ACNGT	1 cut(s)	745
HpyCH4V	TGCA	3 cut(s)	473, 520, 642
HpyF3I	CTNAG	2 cut(s)	562, 679
Hsp92II	CATG	5 cut(s)	37, 151, 347, 530, 636
HspAI	GCGC	2 cut(s)	58, 540
Kzo9I	GATC	3 cut(s)	139, 522, 709
LguI	GCTCTTC	1 cut(s)	333
Lsp1109I	GCAGC	2 cut(s)	124, 249
MaeI	CTAG	3 cut(s)	65, 168, 587
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	3 cut(s)	141, 524, 711
MboI	GATC	3 cut(s)	139, 522, 709
MfeI	CAATTG	1 cut(s)	446
MflI	RGATCY	2 cut(s)	139, 522
MluCI	AATT	5 cut(s)	317, 397, 446, 569, 608
MlyI	GAGTC	2 cut(s)	577, 589
MnlI	CCTC	8 cut(s)	136, 163, 172, 289, 292, 519, 586, 737
MseI	TTAA	1 cut(s)	735
MspI	CCGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	446
Mva1269I	GAATGC	2 cut(s)	60, 542
NdeII	GATC	3 cut(s)	139, 522, 709
NlaIII	CATG	5 cut(s)	37, 151, 347, 530, 636
NmuCI	GTSAC	1 cut(s)	670
NsbI	TGCGCA	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	333
PctI	GAATGC	2 cut(s)	60, 542
PfeI	GAWTC	1 cut(s)	189
PflMI	CCANNNNNTGG	1 cut(s)	532
PkrI	GCNGC	2 cut(s)	114, 264
PleI	GAGTC	2 cut(s)	577, 589
PpsI	GAGTC	2 cut(s)	577, 589
PspPI	GGNCC	1 cut(s)	626
PsuI	RGATCY	2 cut(s)	139, 522
RsaI	GTAC	4 cut(s)	196, 225, 722, 747
RsaNI	GTAC	4 cut(s)	195, 224, 721, 746
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	735
SatI	GCNGC	2 cut(s)	113, 263
Sau3AI	GATC	3 cut(s)	139, 522, 709
Sau96I	GGNCC	1 cut(s)	626
SchI	GAGTC	2 cut(s)	577, 589
SetI	ASST	8 cut(s)	202, 264, 303, 444, 458, 563, 578, 592
SgrAI	CRCCGGYG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	626
Sse9I	AATT	5 cut(s)	317, 397, 446, 569, 608
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	3 cut(s)	65, 168, 587
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	745
TasI	AATT	5 cut(s)	317, 397, 446, 569, 608
TatI	WGTACW	3 cut(s)	223, 720, 745
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	735
Tru9I	TTAA	1 cut(s)	735
TscAI	CASTG	1 cut(s)	644
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	2 cut(s)	112, 262
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	2 cut(s)	360, 375
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	1 cut(s)	644
Van91I	CCANNNNNTGG	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	626
XagI	CCTNNNNNAGG	1 cut(s)	166
XapI	RAATTY	3 cut(s)	397, 569, 608
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	3 cut(s)	65, 168, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.