Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0014743

Physical Location & Seq

Genomic Coordinates Reverse (-)

32267220 .. 32268555

Gene Structure 1336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1184500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCTAACCGCACCACCCACCGGCGCATGTTAGCACCGACAGAGCCAAGGCCCTCCAAGCACTCCACTTCCCTAGATCCTCCTTCCCTGCCTTCTAAACCATCTTCCACCTCCAACCCCACCTCCAGAGTCAACGCAAGTCAACGAATCCGCAGTTCACAGAGCCTCACAGACACTCGCTTGCAGGCCAAATCGATGTCGGCGTCAATGGATTCCTCCAAGTCTTTCCTCAAATCGAACCCTCACCCTAAATCATTCGACCCCAGAAGCGAAAAACAGAGCAAGAAAACAGAGGAATCAGAAAAACCCCAAAAACCCAGTAAAGATGTGGTGGCGGTGGTGAATAAGAAGAAGGGAGCTCAAAATGGGTTGGTTGGTTTTGAGGAAAAGAAGAAGTTTGATAGCGGGAGGAGGCCGTCGGTTTCGTCCGCCGCAAGCGGCGGCGGCGGCGGCGGCGGAAGGAGGAGATCCCTGTCTGGGCCGCAGGTGCAGTTGGCGGATGTGTTAGCAAGTAATGGGGTGAGAATTGTTTCAGCTGATATGCCACCGTTTATGCAGATCCATGCTGTGGAGTGTGCAAGAAAGACGCATGATAGCCTGGAAAAATTCACCTCCAAGACTCTTGCTTTGACTCTCAAAAAGGAATTTGATGGGGTATATGGGCCAGCATGGCACTGCATTGTAGGAACAAGTTTTGGGTCTTTTGTGACGCACTCTGTAAGTGGGTTTCTGTATTTCTCAATGGATCAAAAGTTGTACATCCTCTTGTTTAAGACCACTGTACAAAGAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

266

Amino Acids

28.86

Weight (kDa)

10.18

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	174 - 259	5.8e-27	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014743)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15920 FvH4_5g15920 FvH4_5g15920
malus_domestica	MD06G1184500.v1.1 MD14G1190400.v1.1
prunus_persica	Prupe.5G183300_v2.0.a1 Prupe.5G183300_v2.0.a1
pyrus_communis	pycom06g16370 pycom14g15810
rosa_chinensis	RchiOBHm_Chr1g0349921 RchiOBHm_Chr7g0180131
rosa_laevigata	RLG00000005290
rosa_roxburghii	Rroxscaffold_3G00273100
rosa_rugosa	Rorug06G0430700
rosa_samantha	Rh7BG031200 Rh7CG033100
rosa_wichuraiana	Rw7G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	475
Acc36I	ACCTGC	1 cut(s)	475
AccB7I	CCANNNNNTGG	1 cut(s)	568
AclWI	GGATC	4 cut(s)	71, 462, 553, 753
AcsI	RAATTY	2 cut(s)	605, 644
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	2 cut(s)	758, 783
AfiI	CCNNNNNNNGG	3 cut(s)	21, 477, 568
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	2 cut(s)	359, 536
AluI	AGCT	2 cut(s)	359, 536
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	4 cut(s)	71, 462, 553, 753
AoxI	GGCC	5 cut(s)	50, 186, 413, 479, 662
ApoI	RAATTY	2 cut(s)	605, 644
ArsI	GACNNNNNNTTYG	2 cut(s)	610, 642
Asp700I	GAANNNNTTC	1 cut(s)	529
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	3 cut(s)	51, 479, 662
AsuHPI	GGTGA	4 cut(s)	236, 352, 532, 601
BanII	GRGCYC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	361
BccI	CCATC	2 cut(s)	109, 644
BceAI	ACGGC	1 cut(s)	400
BciT130I	CCWGG	1 cut(s)	599
BfaI	CTAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	475
BglI	GCCNNNNNGGC	1 cut(s)	670
BisI	GCNGC	8 cut(s)	432, 439, 442, 445, 448, 451, 454, 482
BlsI	GCNGC	8 cut(s)	433, 440, 443, 446, 449, 452, 455, 483
Bme1390I	CCNGG	1 cut(s)	599
BmgT120I	GGNCC	3 cut(s)	51, 479, 662
BmrFI	CCNGG	1 cut(s)	599
BmrI	ACTGGG	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 477, 568
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	599
BseCI	ATCGAT	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	2 cut(s)	505, 759
BseLI	CCNNNNNNNGG	3 cut(s)	21, 477, 568
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	2 cut(s)	424, 478
BsgI	GTGCAG	1 cut(s)	509
BshFI	GGCC	5 cut(s)	52, 188, 415, 481, 664
BshVI	ATCGAT	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	3 cut(s)	21, 477, 568
BsnI	GGCC	5 cut(s)	52, 188, 415, 481, 664
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp1407I	TGTACA	2 cut(s)	756, 781
Bsp143I	GATC	4 cut(s)	76, 467, 558, 745
BspANI	GGCC	5 cut(s)	52, 188, 415, 481, 664
BspDI	ATCGAT	1 cut(s)	194
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	4 cut(s)	71, 462, 553, 753
BsrFI	RCCGGY	1 cut(s)	21
BsrGI	TGTACA	2 cut(s)	756, 781
BsrI	ACTGG	1 cut(s)	318
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	4 cut(s)	76, 467, 558, 745
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	549, 781
BstACI	GRCGYC	1 cut(s)	203
BstAUI	TGTACA	2 cut(s)	756, 781
BstC8I	GCNNGC	4 cut(s)	182, 186, 436, 666
BstF5I	GGATG	2 cut(s)	505, 759
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	4 cut(s)	79, 470, 561, 748
BstMBI	GATC	4 cut(s)	76, 467, 558, 745
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 444, 447, 450, 453, 487, 670
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	597
BstX2I	RGATCY	3 cut(s)	76, 467, 558
BstYI	RGATCY	3 cut(s)	76, 467, 558
Bsu15I	ATCGAT	1 cut(s)	194
BsuRI	GGCC	5 cut(s)	52, 188, 415, 481, 664
BsuTUI	ATCGAT	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	505, 759
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	2 cut(s)	673, 777
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	4 cut(s)	182, 186, 436, 666
CfoI	GCGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	3 cut(s)	51, 479, 662
ClaI	ATCGAT	1 cut(s)	194
CseI	GACGC	3 cut(s)	192, 595, 718
Csp6I	GTAC	2 cut(s)	757, 782
CviAII	CATG	4 cut(s)	28, 563, 590, 669
CviQI	GTAC	2 cut(s)	757, 782
DpnI	GATC	4 cut(s)	78, 469, 560, 747
DpnII	GATC	4 cut(s)	76, 467, 558, 745
EciI	GGCGGA	3 cut(s)	418, 471, 512
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	4 cut(s)	31, 566, 593, 672
FaiI	YATR	8 cut(s)	29, 542, 554, 564, 591, 658, 660, 670
FatI	CATG	4 cut(s)	27, 562, 589, 668
FauI	CCCGC	1 cut(s)	398
Fnu4HI	GCNGC	8 cut(s)	432, 439, 442, 445, 448, 451, 454, 482
FokI	GGATG	2 cut(s)	512, 746
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	8 cut(s)	432, 439, 442, 445, 448, 451, 454, 482
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	8 cut(s)	432, 439, 442, 445, 448, 451, 454, 482
GsuI	CTGGAG	1 cut(s)	109
HaeIII	GGCC	5 cut(s)	52, 188, 415, 481, 664
HapII	CCGG	1 cut(s)	22
HgaI	GACGC	3 cut(s)	192, 595, 718
HhaI	GCGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	31, 566, 593, 672
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	2 cut(s)	133, 143
HindII	GTYRAC	2 cut(s)	133, 143
HinfI	GANTC	6 cut(s)	129, 147, 212, 296, 619, 631
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	4 cut(s)	236, 352, 532, 601
Hpy166II	GTNNAC	3 cut(s)	133, 143, 158
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	1 cut(s)	126
Hpy8I	GTNNAC	3 cut(s)	133, 143, 158
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	4 cut(s)	93, 102, 346, 453
HpyCH4III	ACNGT	2 cut(s)	549, 781
HpyCH4V	TGCA	5 cut(s)	184, 490, 556, 578, 678
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 444, 447, 450, 453, 487, 670
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	4 cut(s)	31, 566, 593, 672
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	76, 467, 558, 745
LmnI	GCTCC	1 cut(s)	356
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	4 cut(s)	78, 469, 560, 747
MboI	GATC	4 cut(s)	76, 467, 558, 745
MboII	GAAGA	3 cut(s)	96, 361, 403
MflI	RGATCY	3 cut(s)	76, 467, 558
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	3 cut(s)	525, 605, 644
MlyI	GAGTC	3 cut(s)	138, 613, 625
MmeI	TCCRAC	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	529
MseI	TTAA	1 cut(s)	771
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	7 cut(s)	58, 444, 447, 450, 453, 487, 670
NdeII	GATC	4 cut(s)	76, 467, 558, 745
NlaIII	CATG	4 cut(s)	31, 566, 593, 672
NmuCI	GTSAC	1 cut(s)	706
NspI	RCATGY	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	529
PfeI	GAWTC	3 cut(s)	147, 212, 296
PflMI	CCANNNNNTGG	1 cut(s)	568
PkrI	GCNGC	8 cut(s)	433, 440, 443, 446, 449, 452, 455, 483
PleI	GAGTC	3 cut(s)	137, 613, 625
PpsI	GAGTC	3 cut(s)	137, 613, 625
Psp124BI	GAGCTC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspPI	GGNCC	3 cut(s)	51, 479, 662
PsuI	RGATCY	3 cut(s)	76, 467, 558
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	2 cut(s)	758, 783
RsaNI	GTAC	2 cut(s)	757, 782
SacI	GAGCTC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	771
SatI	GCNGC	8 cut(s)	432, 439, 442, 445, 448, 451, 454, 482
Sau3AI	GATC	4 cut(s)	76, 467, 558, 745
Sau96I	GGNCC	3 cut(s)	51, 479, 662
SchI	GAGTC	3 cut(s)	138, 613, 625
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	6 cut(s)	113, 125, 361, 489, 538, 614
SgrAI	CRCCGGYG	1 cut(s)	21
Sse9I	AATT	3 cut(s)	525, 605, 644
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	549, 781
TaqI	TCGA	3 cut(s)	194, 236, 258
TasI	AATT	3 cut(s)	525, 605, 644
TatI	WGTACW	2 cut(s)	756, 781
TauI	GCSGC	8 cut(s)	434, 441, 444, 447, 450, 453, 456, 484
TfiI	GAWTC	3 cut(s)	147, 212, 296
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TscAI	CASTG	2 cut(s)	680, 784
TseFI	GTSAC	1 cut(s)	706
Tsp45I	GTSAC	1 cut(s)	706
TspRI	CASTG	2 cut(s)	680, 784
Van91I	CCANNNNNTGG	1 cut(s)	568
XapI	RAATTY	2 cut(s)	605, 644
XceI	RCATGY	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	529
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.