Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014743

Physical Location & Seq

Genomic Coordinates Forward (+)

43061668 .. 43062043

Gene Structure 376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57584

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCCTCCATTTATGCAGATCTATGCTGTGGAAAGTGCAAGAAAGACTTATGATAGCTTAGAAAAATTCAATTCCGAGACTCTAGATTTGACTCTCATAAAAGAGTTTGATGGGGTATATGGACCAGCATGGCACTGCATTGTAGGAACAAGTTTTGGGTCTTTTATGACACACTCAGTAAGTGGCTTTATGTATTTCTCAATGGATCAAAAGTTGTACATCCTCTTGTTTAAGACCACAGTACAAAGGGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

85

Amino Acids

9.78

Weight (kDa)

5.53

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	1 - 79	2.4e-21	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014743)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15920 FvH4_5g15920 FvH4_5g15920
malus_domestica	MD06G1184500.v1.1 MD14G1190400.v1.1
prunus_persica	Prupe.5G183300_v2.0.a1 Prupe.5G183300_v2.0.a1
pyrus_communis	pycom06g16370 pycom14g15810
rosa_chinensis	RchiOBHm_Chr1g0349921 RchiOBHm_Chr7g0180131
rosa_laevigata	RLG00000005290
rosa_roxburghii	Rroxscaffold_3G00273100
rosa_rugosa	Rorug06G0430700
rosa_samantha	Rh7BG031200 Rh7CG033100
rosa_wichuraiana	Rw7G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	2 cut(s)	218, 243
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	70, 102
AspS9I	GGNCC	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	122
BccI	CCATC	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	83
BglII	AGATCT	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BseGI	GGATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	71
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	18, 205
BspCNI	CTCAG	1 cut(s)	188
BspPI	GGATC	1 cut(s)	213
BsrGI	TGTACA	1 cut(s)	216
BssMI	GATC	2 cut(s)	18, 205
Bst4CI	ACNGT	1 cut(s)	241
BstAUI	TGTACA	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	58, 175
BstF5I	GGATG	1 cut(s)	219
BstKTI	GATC	2 cut(s)	21, 208
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	18, 205
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	219
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	217, 242
CviAII	CATG	1 cut(s)	129
CviJI	RGCY	2 cut(s)	57, 186
CviKI_1	RGCY	2 cut(s)	57, 186
CviQI	GTAC	2 cut(s)	217, 242
DdeI	CTNAG	2 cut(s)	58, 175
DpnI	GATC	2 cut(s)	20, 207
DpnII	GATC	2 cut(s)	18, 205
Eco47I	GGWCC	1 cut(s)	122
FaeI	CATG	1 cut(s)	132
FaiI	YATR	9 cut(s)	14, 24, 51, 98, 118, 120, 130, 167, 191
FalI	AAGNNNNNCTT	2 cut(s)	31, 63
FatI	CATG	1 cut(s)	128
FokI	GGATG	1 cut(s)	206
FspBI	CTAG	1 cut(s)	83
Hin1II	CATG	1 cut(s)	132
HinfI	GANTC	2 cut(s)	79, 91
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	3 cut(s)	16, 38, 138
HpyF3I	CTNAG	2 cut(s)	58, 175
Hsp92II	CATG	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	18, 205
LpnPI	CCDG	1 cut(s)	138
MaeI	CTAG	1 cut(s)	83
MalI	GATC	2 cut(s)	20, 207
MboI	GATC	2 cut(s)	18, 205
MflI	RGATCY	1 cut(s)	18
MluCI	AATT	2 cut(s)	65, 70
MlyI	GAGTC	2 cut(s)	73, 85
MnlI	CCTC	2 cut(s)	15, 233
MseI	TTAA	1 cut(s)	231
NdeII	GATC	2 cut(s)	18, 205
NlaIII	CATG	1 cut(s)	132
PleI	GAGTC	2 cut(s)	73, 85
PpsI	GAGTC	2 cut(s)	73, 85
PspPI	GGNCC	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	2 cut(s)	218, 243
RsaNI	GTAC	2 cut(s)	217, 242
SaqAI	TTAA	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	18, 205
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	2 cut(s)	73, 85
SetI	ASST	1 cut(s)	59
SgeI	CNNG	7 cut(s)	51, 88, 95, 137, 141, 162, 238
SinI	GGWCC	1 cut(s)	122
Sse9I	AATT	2 cut(s)	65, 70
SspMI	CTAG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	241
TasI	AATT	2 cut(s)	65, 70
TatI	WGTACW	2 cut(s)	216, 241
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	140
TspRI	CASTG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	1 cut(s)	65
XbaI	TCTAGA	1 cut(s)	82
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.