Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0014743

Physical Location & Seq

Genomic Coordinates Reverse (-)

2089635 .. 2090531

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG031200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTTTACTCACCCAAATCCCCAAAAACCAGTCATGGCTAACCGCACCACCCACCGGCGCATTATAGCATCACCAGAACCAGAACCAGAACCAGAACCACCAAGGCAGCAGACCAAACCCTCCACTCCTTTAGATCCCACCATGCCCTCTAAACCCTCTTCTAGGCTAAACCCAAATCACAGAATCCGTACAACTCAAAGACCCAGTAGTCAAAACCCACTACCAAGTCTTGTACACACCAACAATGTTGAGAAACAGAGTAAAGAGAAGCTGCCCAAGAAGCCCAATAGAGAAGTGGATAAGAAGAAAGTTGAGGAGGTGGTGGTGAAGATGGAATTGATGGGTGTCAAAGAAGAAGAGCATGAAGAAAAAGAGTATGAAAGTAGGAGACTTTCTACTTCTTCTTCTTCAAATTCTTTGGGAGGAAGAAGGAAGTCCTTTTGTGGGTCAGGACAGGTTCAATTGAATAGGTTGGCTGATGTGTTTGCAAGCAATGGTGTGAAAGTGGTTTCAGTTGATATGCCTCCATTTATGCAGATCCATGCTGTGGAATGTGCAAGAAAGACTTGTGATAGCTTAGAAAAATTCACCTCCAAGACTCTAGCTTTGACTCTCAAAAAGGAATTTGATGGGGTATATGGACCAGCATGGCACTGCATTGTAGGAACAAGTTTTGGGTCTTTTGTGACACACTCAGTAAGTGGCTTTATGTATTTCTCAATGGATCAAAAGTTGTACATCCTCTTGTTTAAGACCACAGTACAAAGAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

258

Amino Acids

29.14

Weight (kDa)

9.53

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	167 - 252	2.2e-27	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014743)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15920 FvH4_5g15920 FvH4_5g15920
malus_domestica	MD06G1184500.v1.1 MD14G1190400.v1.1
prunus_persica	Prupe.5G183300_v2.0.a1 Prupe.5G183300_v2.0.a1
pyrus_communis	pycom06g16370 pycom14g15810
rosa_chinensis	RchiOBHm_Chr1g0349921 RchiOBHm_Chr7g0180131
rosa_laevigata	RLG00000005290
rosa_roxburghii	Rroxscaffold_3G00273100
rosa_rugosa	Rorug06G0430700
rosa_samantha	Rh7BG031200 Rh7CG033100
rosa_wichuraiana	Rw7G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	547
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	3 cut(s)	128, 532, 732
AcsI	RAATTY	3 cut(s)	412, 584, 623
AfaI	GTAC	4 cut(s)	190, 234, 737, 762
AfiI	CCNNNNNNNGG	4 cut(s)	54, 162, 444, 547
AgsI	TTSAA	3 cut(s)	411, 461, 466
AluBI	AGCT	3 cut(s)	271, 576, 605
AluI	AGCT	3 cut(s)	271, 576, 605
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	3 cut(s)	128, 532, 732
ApeKI	GCWGC	2 cut(s)	106, 271
ApoI	RAATTY	3 cut(s)	412, 584, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	589, 621
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	641
AsuHPI	GGTGA	3 cut(s)	63, 337, 580
AvaII	GGWCC	1 cut(s)	641
BbvI	GCAGC	2 cut(s)	118, 258
BccI	CCATC	3 cut(s)	325, 334, 623
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	2 cut(s)	162, 602
BisI	GCNGC	2 cut(s)	107, 272
BlsI	GCNGC	2 cut(s)	108, 273
Bme18I	GGWCC	1 cut(s)	641
BmgT120I	GGNCC	1 cut(s)	641
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 162, 444, 547
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	29, 204
Bse3DI	GCAATG	1 cut(s)	499
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	1 cut(s)	738
BseLI	CCNNNNNNNGG	4 cut(s)	54, 162, 444, 547
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	2 cut(s)	29, 204
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	118, 258
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	4 cut(s)	54, 162, 444, 547
BsmAI	GTCTC	1 cut(s)	382
Bsp1407I	TGTACA	2 cut(s)	232, 735
Bsp143I	GATC	3 cut(s)	133, 537, 724
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	707
BspPI	GGATC	3 cut(s)	128, 532, 732
BspQI	GCTCTTC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	54
BsrGI	TGTACA	2 cut(s)	232, 735
BsrI	ACTGG	2 cut(s)	29, 204
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	3 cut(s)	133, 537, 724
BssT1I	CCWWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	760
Bst6I	CTCTTC	2 cut(s)	163, 351
BstAUI	TGTACA	2 cut(s)	232, 735
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	2 cut(s)	577, 694
BstENI	CCTNNNNNAGG	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	738
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	3 cut(s)	136, 540, 727
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	3 cut(s)	133, 537, 724
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	118, 258
BstX2I	RGATCY	2 cut(s)	133, 537
BstYI	RGATCY	2 cut(s)	133, 537
BtsCI	GGATG	1 cut(s)	738
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	1 cut(s)	652
Cac8I	GCNNGC	1 cut(s)	490
CfoI	GCGC	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	641
Csp6I	GTAC	4 cut(s)	189, 233, 736, 761
CviAII	CATG	5 cut(s)	34, 142, 362, 542, 648
CviJI	RGCY	8 cut(s)	38, 166, 271, 283, 476, 576, 605, 705
CviKI_1	RGCY	8 cut(s)	38, 166, 271, 283, 476, 576, 605, 705
CviQI	GTAC	4 cut(s)	189, 233, 736, 761
DdeI	CTNAG	2 cut(s)	577, 694
DpnI	GATC	3 cut(s)	135, 539, 726
DpnII	GATC	3 cut(s)	133, 537, 724
DrdI	GACNNNNNNGTC	1 cut(s)	207
DseDI	GACNNNNNNGTC	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	163, 351
EarI	CTCTTC	2 cut(s)	163, 351
Eco130I	CCWWGG	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	641
EcoNI	CCTNNNNNAGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaeI	CATG	5 cut(s)	37, 145, 365, 545, 651
FalI	AAGNNNNNCTT	2 cut(s)	550, 582
FatI	CATG	5 cut(s)	33, 141, 361, 541, 647
Fnu4HI	GCNGC	2 cut(s)	107, 272
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	2 cut(s)	107, 272
FspBI	CTAG	2 cut(s)	162, 602
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	107, 272
HapII	CCGG	1 cut(s)	55
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	37, 145, 365, 545, 651
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	3 cut(s)	183, 598, 610
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	3 cut(s)	63, 337, 580
Hpy166II	GTNNAC	2 cut(s)	6, 235
Hpy188III	TCNNGA	1 cut(s)	450
Hpy8I	GTNNAC	2 cut(s)	6, 235
HpyAV	CCTTC	1 cut(s)	423
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4V	TGCA	4 cut(s)	488, 535, 557, 657
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	2 cut(s)	577, 694
Hsp92II	CATG	5 cut(s)	37, 145, 365, 545, 651
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	133, 537, 724
LguI	GCTCTTC	1 cut(s)	351
Lsp1109I	GCAGC	2 cut(s)	118, 258
LweI	GCATC	1 cut(s)	77
MaeI	CTAG	2 cut(s)	162, 602
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	3 cut(s)	135, 539, 726
MboI	GATC	3 cut(s)	133, 537, 724
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	2 cut(s)	133, 537
MluCI	AATT	5 cut(s)	335, 412, 461, 584, 623
MlyI	GAGTC	2 cut(s)	592, 604
MnlI	CCTC	9 cut(s)	130, 157, 166, 307, 310, 416, 534, 601, 752
MseI	TTAA	1 cut(s)	750
MspI	CCGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	461
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeII	GATC	3 cut(s)	133, 537, 724
NlaIII	CATG	5 cut(s)	37, 145, 365, 545, 651
NmuCI	GTSAC	1 cut(s)	685
PciSI	GCTCTTC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	2 cut(s)	108, 273
PleI	GAGTC	2 cut(s)	592, 604
PpsI	GAGTC	2 cut(s)	592, 604
PspPI	GGNCC	1 cut(s)	641
PsuI	RGATCY	2 cut(s)	133, 537
RsaI	GTAC	4 cut(s)	190, 234, 737, 762
RsaNI	GTAC	4 cut(s)	189, 233, 736, 761
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	2 cut(s)	107, 272
Sau3AI	GATC	3 cut(s)	133, 537, 724
Sau96I	GGNCC	1 cut(s)	641
SchI	GAGTC	2 cut(s)	592, 604
SetI	ASST	7 cut(s)	273, 321, 459, 473, 578, 593, 607
SfaNI	GCATC	1 cut(s)	77
SgrAI	CRCCGGYG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	641
Sse9I	AATT	5 cut(s)	335, 412, 461, 584, 623
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	2 cut(s)	162, 602
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	760
TasI	AATT	5 cut(s)	335, 412, 461, 584, 623
TatI	WGTACW	3 cut(s)	232, 735, 760
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	1 cut(s)	659
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	2 cut(s)	106, 271
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	2 cut(s)	378, 393
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	1 cut(s)	659
Van91I	CCANNNNNTGG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	641
XagI	CCTNNNNNAGG	1 cut(s)	160
XapI	RAATTY	3 cut(s)	412, 584, 623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XspI	CTAG	2 cut(s)	162, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.