RLG00000005290

Dynein light chain type 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014743
Physical Location & Seq
Forward (+)
66550698 .. 66551559
862 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005290

Sequence Viewer

Length: 741 bp
ATGGCTAACCGCACCACCCACCGGCGCATTTTAGCAACACCAGAACCAGAACCAGAACCACCAAGGCAGCGGACCAAACCCTCCACTCCTTTAGATCCCACCATGCTCTCTAAACCCTCTTCTAGGCTAAACCCAAATCACAGAATCCGTACAACTCAAAGACCCAGTAGTCAAAACCCACTCCCAAGTCTTGTACACACCAACAATGTTGAGAAACAGAGTAAAGAGAAGCTGCCCAAGAAGCCCCATAGAGAAGTGGATAAGAAGAAAGTTGAGGAGGTGGTGGTGAAGATGGAATTGATGGGTGTCAAAGAAGAAGAGCATGAAGAAAAAGAGTATGAAAGTAGGAGACTTTCTACTTCTTCTTCTTCTTCAAATTCTTTGGGTGGAAGAAGGAAGTCCTTTTGTGGGTCAGGACAGGTTCAATTGAATAGGTTGGCTGATGTGTTTGCAAGCAATGGTGTGAAAGTGGTTTCAGTTGATATGCCTCCATTTATGCAGATCCATGCTGTGGAATGTGCAAGAAAGACTTGTGATAGCTTAGAAAAATTCACCTCCAAGACTCTAGCTTTGACTCTCAAAAAGGAATTTGATGGGGTATATGGACCAGCATGGCACTGCATTGTAGGAACAAGTTTTGGGTCTTTTGTGACACACTCAGTAAGTGGCTTTATGTATTTCTCAATGGATCAAAAGTTGTACATCCTCTTGTTTAAGACCACAGTACAAAGAGCAGACTGA

Protein Analysis

247

Amino Acids

27.8

Weight (kDa)

9.62

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 155 - 240 2e-27 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014743)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g15920 FvH4_5g15920 FvH4_5g15920
malus_domestica MD06G1184500.v1.1 MD14G1190400.v1.1
prunus_persica Prupe.5G183300_v2.0.a1 Prupe.5G183300_v2.0.a1
pyrus_communis pycom06g16370 pycom14g15810
rosa_chinensis RchiOBHm_Chr1g0349921 RchiOBHm_Chr7g0180131
rosa_laevigata RLG00000005290
rosa_roxburghii Rroxscaffold_3G00273100
rosa_rugosa Rorug06G0430700
rosa_samantha Rh7BG031200 Rh7CG033100
rosa_wichuraiana Rw7G002600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 511
AciI CCGC 2 cut(s) 10, 70
AclWI GGATC 3 cut(s) 89, 496, 696
AcsI RAATTY 3 cut(s) 376, 548, 587
AfaI GTAC 4 cut(s) 151, 195, 701, 726
AfiI CCNNNNNNNGG 4 cut(s) 21, 123, 408, 511
AgsI TTSAA 3 cut(s) 375, 425, 430
AluBI AGCT 3 cut(s) 232, 540, 569
AluI AGCT 3 cut(s) 232, 540, 569
Alw26I GTCTC 1 cut(s) 343
AlwI GGATC 3 cut(s) 89, 496, 696
ApeKI GCWGC 2 cut(s) 67, 232
ApoI RAATTY 3 cut(s) 376, 548, 587
ArsI GACNNNNNNTTYG 2 cut(s) 553, 585
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 2 cut(s) 72, 605
AsuHPI GGTGA 2 cut(s) 298, 544
AvaII GGWCC 2 cut(s) 72, 605
BbvI GCAGC 2 cut(s) 79, 219
BccI CCATC 3 cut(s) 286, 295, 587
BcoDI GTCTC 1 cut(s) 343
BfaI CTAG 2 cut(s) 123, 566
BisI GCNGC 2 cut(s) 68, 233
BlsI GCNGC 2 cut(s) 69, 234
Bme18I GGWCC 2 cut(s) 72, 605
BmgT120I GGNCC 2 cut(s) 72, 605
BmrI ACTGGG 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 62
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 123, 408, 511
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 463
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 702
BseLI CCNNNNNNNGG 4 cut(s) 21, 123, 408, 511
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 2 cut(s) 79, 219
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 4 cut(s) 21, 123, 408, 511
BsmAI GTCTC 1 cut(s) 343
Bsp1407I TGTACA 2 cut(s) 193, 699
Bsp143I GATC 3 cut(s) 94, 501, 688
BspACI CCGC 2 cut(s) 10, 70
BspCNI CTCAG 1 cut(s) 671
BspPI GGATC 3 cut(s) 89, 496, 696
BspQI GCTCTTC 1 cut(s) 312
BsrDI GCAATG 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 21
BsrGI TGTACA 2 cut(s) 193, 699
BsrI ACTGG 1 cut(s) 165
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 3 cut(s) 94, 501, 688
BssT1I CCWWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 724
Bst6I CTCTTC 2 cut(s) 124, 312
BstAUI TGTACA 2 cut(s) 193, 699
BstC8I GCNNGC 1 cut(s) 454
BstDEI CTNAG 2 cut(s) 541, 658
BstENI CCTNNNNNAGG 1 cut(s) 121
BstF5I GGATG 1 cut(s) 702
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 3 cut(s) 97, 504, 691
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 3 cut(s) 94, 501, 688
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 79, 219
BstX2I RGATCY 2 cut(s) 94, 501
BstYI RGATCY 2 cut(s) 94, 501
BtsCI GGATG 1 cut(s) 702
BtsI GCAGTG 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 454
CfoI GCGC 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 72, 605
Csp6I GTAC 4 cut(s) 150, 194, 700, 725
CviAII CATG 4 cut(s) 103, 323, 506, 612
CviJI RGCY 8 cut(s) 5, 127, 232, 244, 440, 540, 569, 669
CviKI_1 RGCY 8 cut(s) 5, 127, 232, 244, 440, 540, 569, 669
CviQI GTAC 4 cut(s) 150, 194, 700, 725
DdeI CTNAG 2 cut(s) 541, 658
DpnI GATC 3 cut(s) 96, 503, 690
DpnII GATC 3 cut(s) 94, 501, 688
DrdI GACNNNNNNGTC 1 cut(s) 168
DseDI GACNNNNNNGTC 1 cut(s) 168
Eam1104I CTCTTC 2 cut(s) 124, 312
EarI CTCTTC 2 cut(s) 124, 312
Eco130I CCWWGG 1 cut(s) 62
Eco47I GGWCC 2 cut(s) 72, 605
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 4 cut(s) 106, 326, 509, 615
FalI AAGNNNNNCTT 2 cut(s) 514, 546
FatI CATG 4 cut(s) 102, 322, 505, 611
Fnu4HI GCNGC 2 cut(s) 68, 233
FokI GGATG 1 cut(s) 689
Fsp4HI GCNGC 2 cut(s) 68, 233
FspBI CTAG 2 cut(s) 123, 566
GlaI GCGC 1 cut(s) 26
GluI GCNGC 2 cut(s) 68, 233
HapII CCGG 1 cut(s) 22
HhaI GCGC 1 cut(s) 27
Hin1II CATG 4 cut(s) 106, 326, 509, 615
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 3 cut(s) 144, 562, 574
HpaII CCGG 1 cut(s) 22
HphI GGTGA 2 cut(s) 298, 544
Hpy166II GTNNAC 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 414
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 387
HpyCH4III ACNGT 1 cut(s) 724
HpyCH4V TGCA 4 cut(s) 452, 499, 521, 621
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 2 cut(s) 541, 658
Hsp92II CATG 4 cut(s) 106, 326, 509, 615
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 3 cut(s) 94, 501, 688
LguI GCTCTTC 1 cut(s) 312
LpnPI CCDG 8 cut(s) 35, 54, 60, 66, 178, 399, 404, 621
Lsp1109I GCAGC 2 cut(s) 79, 219
MaeI CTAG 2 cut(s) 123, 566
MaeIII GTNAC 1 cut(s) 649
MalI GATC 3 cut(s) 96, 503, 690
MboI GATC 3 cut(s) 94, 501, 688
MfeI CAATTG 1 cut(s) 425
MflI RGATCY 2 cut(s) 94, 501
MluCI AATT 5 cut(s) 296, 376, 425, 548, 587
MlyI GAGTC 2 cut(s) 556, 568
MnlI CCTC 7 cut(s) 91, 127, 268, 271, 498, 565, 716
MseI TTAA 1 cut(s) 714
MspA1I CMGCKG 1 cut(s) 70
MspI CCGG 1 cut(s) 22
MunI CAATTG 1 cut(s) 425
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeII GATC 3 cut(s) 94, 501, 688
NlaIII CATG 4 cut(s) 106, 326, 509, 615
NmuCI GTSAC 1 cut(s) 649
PciSI GCTCTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 144
PflMI CCANNNNNTGG 1 cut(s) 511
PkrI GCNGC 2 cut(s) 69, 234
PleI GAGTC 2 cut(s) 556, 568
PpsI GAGTC 2 cut(s) 556, 568
PspPI GGNCC 2 cut(s) 72, 605
PsuI RGATCY 2 cut(s) 94, 501
RsaI GTAC 4 cut(s) 151, 195, 701, 726
RsaNI GTAC 4 cut(s) 150, 194, 700, 725
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 714
SatI GCNGC 2 cut(s) 68, 233
Sau3AI GATC 3 cut(s) 94, 501, 688
Sau96I GGNCC 2 cut(s) 72, 605
SchI GAGTC 2 cut(s) 556, 568
SetI ASST 7 cut(s) 234, 282, 423, 437, 542, 557, 571
SgrAI CRCCGGYG 1 cut(s) 21
SinI GGWCC 2 cut(s) 72, 605
Sse9I AATT 5 cut(s) 296, 376, 425, 548, 587
SsiI CCGC 2 cut(s) 10, 70
SspMI CTAG 2 cut(s) 123, 566
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 724
TasI AATT 5 cut(s) 296, 376, 425, 548, 587
TatI WGTACW 3 cut(s) 193, 699, 724
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 1 cut(s) 714
Tru9I TTAA 1 cut(s) 714
TscAI CASTG 1 cut(s) 623
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 2 cut(s) 67, 232
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 2 cut(s) 339, 354
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 1 cut(s) 623
Van91I CCANNNNNTGG 1 cut(s) 511
VpaK11BI GGWCC 2 cut(s) 72, 605
XagI CCTNNNNNAGG 1 cut(s) 121
XapI RAATTY 3 cut(s) 376, 548, 587
XspI CTAG 2 cut(s) 123, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.