Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014743

Physical Location & Seq

Genomic Coordinates Forward (+)

64995922 .. 64997159

Gene Structure 1238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTTACTCACCCAAATCCCCAAAAACCAGTCATGGCTAACCGCACCACCCACCGGCGCATTTTAGCAACACCAGAACCAGAACCACCAAGGCAGCAGACCAAACCCTCCACTCCTTTAGATCCCACCATGCCCTCTAAACCCTCTTCTAGGCTAAACCCAAATCACAGAATCCGTACAACTCAAAGACCCAGTAGTCAAAACCCACTCCCAAGTCTTGTACACACCAACAATGTTGAGAAACAGAGTAAAGAGAAGCTGCCCAAGAAGCCCAATAGAGAAGTGGATAAGAAGAAAGTTGAGGAGGTGGTGGTGAAGATGGAATTGATGGGTGTCAAAGAAGAAGAGCATGAAGAAAAAGAGTATGAAAGTAGGAGACTTTCTACTTCTTCTTCTTCTTCAAATTCTTTGGGTGGAAGAAGGAAGTCCTTTTGTGGGTCAGGACAGGTTCAATTGAATAGGTTGGCTGATGTGTTTGCAAGCAATGGTGTGAAAGTGGTTTCGGTTGATATGCCTCCATTTATGCAGATCCATGCTGTGGAATGTGCAAGAAAGACTTGTGATAGCTTAGAAAAATTCACCTCCAAGACTCTAGCTTTGACTCTCAAAAAGGAATTTGATGGGGTATATGGACCAGCATGGCACTGCATTGTAGGAACAAGTTTTGGGTCTTTTGTGACACACTCAGTAAGTGGCTTTATGTATTTCTCAATGGATCAAAAGTTGTACATCCTCTTGTTTAAGACTACAGTACAAAGAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

255

Amino Acids

28.79

Weight (kDa)

9.67

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	164 - 249	2.2e-27	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014743)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15920 FvH4_5g15920 FvH4_5g15920
malus_domestica	MD06G1184500.v1.1 MD14G1190400.v1.1
prunus_persica	Prupe.5G183300_v2.0.a1 Prupe.5G183300_v2.0.a1
pyrus_communis	pycom06g16370 pycom14g15810
rosa_chinensis	RchiOBHm_Chr1g0349921 RchiOBHm_Chr7g0180131
rosa_laevigata	RLG00000005290
rosa_roxburghii	Rroxscaffold_3G00273100
rosa_rugosa	Rorug06G0430700
rosa_samantha	Rh7BG031200 Rh7CG033100
rosa_wichuraiana	Rw7G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	195
AccB7I	CCANNNNNTGG	1 cut(s)	538
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	3 cut(s)	116, 523, 723
AcsI	RAATTY	3 cut(s)	403, 575, 614
AfaI	GTAC	4 cut(s)	178, 222, 728, 753
AfiI	CCNNNNNNNGG	4 cut(s)	54, 150, 435, 538
AgsI	TTSAA	3 cut(s)	402, 452, 457
AluBI	AGCT	3 cut(s)	259, 567, 596
AluI	AGCT	3 cut(s)	259, 567, 596
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	3 cut(s)	116, 523, 723
ApeKI	GCWGC	2 cut(s)	94, 259
ApoI	RAATTY	3 cut(s)	403, 575, 614
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	632
AsuHPI	GGTGA	2 cut(s)	325, 571
AvaII	GGWCC	1 cut(s)	632
BbvI	GCAGC	2 cut(s)	106, 246
BccI	CCATC	3 cut(s)	313, 322, 614
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	2 cut(s)	150, 593
BfmI	CTRYAG	1 cut(s)	747
BisI	GCNGC	2 cut(s)	95, 260
BlsI	GCNGC	2 cut(s)	96, 261
Bme18I	GGWCC	1 cut(s)	632
BmgT120I	GGNCC	1 cut(s)	632
BmrI	ACTGGG	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 150, 435, 538
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	29, 192
Bse3DI	GCAATG	1 cut(s)	490
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	729
BseLI	CCNNNNNNNGG	4 cut(s)	54, 150, 435, 538
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	2 cut(s)	29, 192
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	106, 246
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	4 cut(s)	54, 150, 435, 538
BsmAI	GTCTC	1 cut(s)	370
Bsp1407I	TGTACA	2 cut(s)	220, 726
Bsp143I	GATC	3 cut(s)	121, 528, 715
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	698
BspPI	GGATC	3 cut(s)	116, 523, 723
BspQI	GCTCTTC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	490
BsrFI	RCCGGY	1 cut(s)	54
BsrGI	TGTACA	2 cut(s)	220, 726
BsrI	ACTGG	2 cut(s)	29, 192
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	3 cut(s)	121, 528, 715
BssT1I	CCWWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	2 cut(s)	151, 339
BstAUI	TGTACA	2 cut(s)	220, 726
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	2 cut(s)	568, 685
BstENI	CCTNNNNNAGG	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	729
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	3 cut(s)	124, 531, 718
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	3 cut(s)	121, 528, 715
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	747
BstV1I	GCAGC	2 cut(s)	106, 246
BstX2I	RGATCY	2 cut(s)	121, 528
BstYI	RGATCY	2 cut(s)	121, 528
BtsCI	GGATG	1 cut(s)	729
BtsI	GCAGTG	1 cut(s)	643
BtsIMutI	CAGTG	1 cut(s)	643
Cac8I	GCNNGC	1 cut(s)	481
CfoI	GCGC	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	632
Csp6I	GTAC	4 cut(s)	177, 221, 727, 752
CviAII	CATG	5 cut(s)	34, 130, 350, 533, 639
CviJI	RGCY	8 cut(s)	38, 154, 259, 271, 467, 567, 596, 696
CviKI_1	RGCY	8 cut(s)	38, 154, 259, 271, 467, 567, 596, 696
CviQI	GTAC	4 cut(s)	177, 221, 727, 752
DdeI	CTNAG	2 cut(s)	568, 685
DpnI	GATC	3 cut(s)	123, 530, 717
DpnII	GATC	3 cut(s)	121, 528, 715
DrdI	GACNNNNNNGTC	1 cut(s)	195
DseDI	GACNNNNNNGTC	1 cut(s)	195
Eam1104I	CTCTTC	2 cut(s)	151, 339
EarI	CTCTTC	2 cut(s)	151, 339
Eco130I	CCWWGG	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	632
EcoNI	CCTNNNNNAGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	5 cut(s)	37, 133, 353, 536, 642
FalI	AAGNNNNNCTT	2 cut(s)	541, 573
FatI	CATG	5 cut(s)	33, 129, 349, 532, 638
Fnu4HI	GCNGC	2 cut(s)	95, 260
FokI	GGATG	1 cut(s)	716
Fsp4HI	GCNGC	2 cut(s)	95, 260
FspBI	CTAG	2 cut(s)	150, 593
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	95, 260
HapII	CCGG	1 cut(s)	55
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	37, 133, 353, 536, 642
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	3 cut(s)	171, 589, 601
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	2 cut(s)	325, 571
Hpy166II	GTNNAC	2 cut(s)	6, 223
Hpy188III	TCNNGA	1 cut(s)	441
Hpy8I	GTNNAC	2 cut(s)	6, 223
HpyAV	CCTTC	1 cut(s)	414
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4V	TGCA	4 cut(s)	479, 526, 548, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	2 cut(s)	568, 685
Hsp92II	CATG	5 cut(s)	37, 133, 353, 536, 642
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	121, 528, 715
LguI	GCTCTTC	1 cut(s)	339
LpnPI	CCDG	8 cut(s)	42, 68, 87, 93, 205, 426, 431, 648
Lsp1109I	GCAGC	2 cut(s)	106, 246
MaeI	CTAG	2 cut(s)	150, 593
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	3 cut(s)	123, 530, 717
MboI	GATC	3 cut(s)	121, 528, 715
MfeI	CAATTG	1 cut(s)	452
MflI	RGATCY	2 cut(s)	121, 528
MluCI	AATT	5 cut(s)	323, 403, 452, 575, 614
MlyI	GAGTC	2 cut(s)	583, 595
MnlI	CCTC	8 cut(s)	118, 145, 154, 295, 298, 525, 592, 743
MseI	TTAA	1 cut(s)	741
MspI	CCGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	452
MwoI	GCNNNNNNNGC	1 cut(s)	268
NdeII	GATC	3 cut(s)	121, 528, 715
NlaIII	CATG	5 cut(s)	37, 133, 353, 536, 642
NmuCI	GTSAC	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	171
PflMI	CCANNNNNTGG	1 cut(s)	538
PkrI	GCNGC	2 cut(s)	96, 261
PleI	GAGTC	2 cut(s)	583, 595
PpsI	GAGTC	2 cut(s)	583, 595
PspPI	GGNCC	1 cut(s)	632
PsuI	RGATCY	2 cut(s)	121, 528
RsaI	GTAC	4 cut(s)	178, 222, 728, 753
RsaNI	GTAC	4 cut(s)	177, 221, 727, 752
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	741
SatI	GCNGC	2 cut(s)	95, 260
Sau3AI	GATC	3 cut(s)	121, 528, 715
Sau96I	GGNCC	1 cut(s)	632
SchI	GAGTC	2 cut(s)	583, 595
SetI	ASST	7 cut(s)	261, 309, 450, 464, 569, 584, 598
SfcI	CTRYAG	1 cut(s)	747
SgrAI	CRCCGGYG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	632
Sse9I	AATT	5 cut(s)	323, 403, 452, 575, 614
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	2 cut(s)	150, 593
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	751
TasI	AATT	5 cut(s)	323, 403, 452, 575, 614
TatI	WGTACW	3 cut(s)	220, 726, 751
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	1 cut(s)	650
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	2 cut(s)	94, 259
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	2 cut(s)	366, 381
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	650
Van91I	CCANNNNNTGG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	632
XagI	CCTNNNNNAGG	1 cut(s)	148
XapI	RAATTY	3 cut(s)	403, 575, 614
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XspI	CTAG	2 cut(s)	150, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.