FvH4_5g18930

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016854
Physical Location & Seq
Reverse (-)
10868043 .. 10871344
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18930.t1

Sequence Viewer

Length: 1185 bp
ATGGACCATCACCTCCTCCAACAGCTTCAGCAACAGCTCCTCCTCCAAGCCCAACAACAACCAAACCACCACCCTTTCAATCCCAATCCGCACCCACCTTACTACCCTCCTCAATATCAATACCCACAAAATGGTTATAGCCAATCAAACTATACCAATCTCTATCCCCTGCAAGCTTATCCCCAGCCGGCAGTCCTTCAACCACCTCAGCTTACGGTGCCACCGTCGCCTTACTCGGGCACAGTGAGGCCTCAGTGGGCCTCTCCAATGGTTGACCAACCTCCATATAGGGGTATCAGAGAAGTGGGTGGTGAACTATTCAGAGGACATCAAGGAAATTTTGGCTACAGGGGAGCTCACCCATCTTTCATTGGGGAATCATATGGTCCAGGTAGGGGTGGTCTCAGAACAGAACAGGGTGTCCCTTCAACATCTTCTCATCCTCCCCATCAAACTTATCAACCTCCGCTAACACTAACTCCTCAGACGTCGGAATCTGCATCAGCACTGAAAACGGAAGTTCCAAACTACCAAAAACCTCAAGTTGCTCAAAAAACCATGGTTGCATGGTGTGAAGTTTGTAAGGCTTCATGCACTAATTTGGACGTTCTTAAACAACACCAAAGTGGAAGGCGACATCAAAGGAACCTCAAAAATATGGAACGGTTGAAAGATGGTGTCAGACCAGGGGCTATACAGCGTTGCACATCTAATACAAAGGTTGAAGTTCCTCATCAGAGTCAGTGTGAACAAGGTGGTGAAGAGAAAAACACAACAAAGAATATGCTCTCTGAACCTGTTGGCTACAAAGCTTCAAGGGAAACTGGAAAGCAACAGGCTGAAATTCCACCAGGTGACGGGTCTGACAATGTGAAGCGGGGTAAGAAGCGCAAGAAAACGAGAATGGCTGGGGTTGAACCTTCCAAACGTAAAGATGTCATTCCTATAGCCTGTGACTTGTGTAATGTCAAGTGTGAGACACAGGCAGTTTTTGAGGGCCATCTTTCAGGAAAGAAGCATTTTGCCAAGTATAAACGACTTAATGGCCATGAACCTTTGCATCGTCCCGTGGGGCTTCAAGTTGTTTATCCCCCTAACGCAGAGACTGAAACTGTACTCCAACCCCAAGAAGGAAGATATATACCTCCCCATGTGTACCAAGATATACTGGTGGAAACAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

395

Amino Acids

44.17

Weight (kDa)

9.27

Isoelectric Point (pI)

54.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 190 - 213 6.7e-06 Zinc-finger of C2H2 type
zf-met PF12874 318 - 340 2.4e-06 Zinc-finger of C2H2 type
zf-C2H2_jaz PF12171 318 - 340 8.2e-06 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016854)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18930
prunus_persica Prupe.5G069800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203321
rosa_laevigata RLG00000003535
rosa_multiflora Rmu_sc0002286.1_g000001 Rmu_sc0003582.1_g000006
rosa_roxburghii Rroxscaffold_3G00253880
rosa_rugosa Rorug07G0075500 Rorug07G0075600
rosa_samantha Rh7AG205200 Rh7BG204600 Rh7CG216400 Rh7DG211700
rosa_wichuraiana Rw7G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 491
AccB1I GGYRCC 1 cut(s) 217
AccB7I CCANNNNNTGG 1 cut(s) 131
AciI CCGC 3 cut(s) 89, 467, 877
AcoI YGGCCR 1 cut(s) 1045
AcsI RAATTY 2 cut(s) 337, 843
AcuI CTGAAG 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 488
AdeI CACNNNGTG 1 cut(s) 854
AfaI GTAC 2 cut(s) 1116, 1157
AfiI CCNNNNNNNGG 6 cut(s) 131, 236, 290, 395, 857, 1130
AgsI TTSAA 8 cut(s) 79, 200, 429, 670, 725, 816, 917, 1079
AjnI CCWGG 3 cut(s) 388, 685, 850
AleI CACNNNNGTG 1 cut(s) 624
AloI GAACNNNNNNTCC 2 cut(s) 405, 437
AluBI AGCT 6 cut(s) 25, 37, 176, 211, 356, 812
AluI AGCT 6 cut(s) 25, 37, 176, 211, 356, 812
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 3 cut(s) 407, 971, 1097
AlwNI CAGNNNCTG 1 cut(s) 1106
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 4 cut(s) 248, 258, 997, 1045
ApoI RAATTY 2 cut(s) 337, 843
AspLEI GCGC 1 cut(s) 891
AspS9I GGNCC 4 cut(s) 4, 258, 386, 997
AsuHPI GGTGA 4 cut(s) 323, 350, 770, 866
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 2 cut(s) 4, 386
BaeGI GKGCMC 1 cut(s) 242
BalI TGGCCA 1 cut(s) 1047
BanI GGYRCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 358
BbvCI CCTCAGC 1 cut(s) 207
BccI CCATC 5 cut(s) 15, 370, 456, 668, 1008
BciT130I CCWGG 3 cut(s) 390, 687, 852
BcoDI GTCTC 3 cut(s) 407, 971, 1097
BfmI CTRYAG 2 cut(s) 346, 945
Bme1390I CCNGG 3 cut(s) 390, 687, 852
Bme18I GGWCC 2 cut(s) 4, 386
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 4 cut(s) 4, 258, 386, 997
BmiI GGNNCC 2 cut(s) 219, 647
BmrFI CCNGG 3 cut(s) 390, 687, 852
BmsI GCATC 2 cut(s) 509, 1069
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 3 cut(s) 558, 686, 1068
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 463, 493
Bsc4I CCNNNNNNNGG 6 cut(s) 131, 236, 290, 395, 857, 1130
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 2 cut(s) 829, 1173
BseBI CCWGG 3 cut(s) 390, 687, 852
BseDI CCNNGG 3 cut(s) 558, 686, 1068
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 6 cut(s) 131, 236, 290, 395, 857, 1130
BseMII CTCAG 4 cut(s) 221, 266, 418, 497
BseNI ACTGG 2 cut(s) 829, 1173
BseRI GAGGAG 5 cut(s) 5, 29, 32, 99, 471
BseSI GKGCMC 1 cut(s) 242
BseYI CCCAGC 2 cut(s) 183, 908
BshFI GGCC 4 cut(s) 250, 260, 999, 1047
BshNI GGYRCC 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 2 cut(s) 407, 1050
BslI CCNNNNNNNGG 6 cut(s) 131, 236, 290, 395, 857, 1130
BsmAI GTCTC 3 cut(s) 407, 971, 1097
BsmFI GGGAC 2 cut(s) 407, 1050
BsnI GGCC 4 cut(s) 250, 260, 999, 1047
Bso31I GGTCTC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 242, 358
Bsp19I CCATGG 1 cut(s) 558
BspACI CCGC 3 cut(s) 89, 467, 877
BspANI GGCC 4 cut(s) 250, 260, 999, 1047
BspCNI CTCAG 4 cut(s) 220, 265, 417, 496
BspLI GGNNCC 2 cut(s) 219, 647
BspT107I GGYRCC 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 407
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 2 cut(s) 829, 1173
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 3 cut(s) 558, 686, 1068
BssNI GRCGYC 1 cut(s) 488
BssT1I CCWWGG 1 cut(s) 558
Bst2UI CCWGG 3 cut(s) 390, 687, 852
Bst4CI ACNGT 5 cut(s) 217, 225, 244, 666, 1114
Bst6I CTCTTC 1 cut(s) 756
BstACI GRCGYC 1 cut(s) 488
BstC8I GCNNGC 2 cut(s) 174, 189
BstDEI CTNAG 4 cut(s) 207, 252, 404, 483
BstDSI CCRYGG 2 cut(s) 558, 1068
BstF5I GGATG 1 cut(s) 439
BstHHI GCGC 1 cut(s) 891
BstMAI GTCTC 3 cut(s) 407, 971, 1097
BstMWI GCNNNNNNNGC 2 cut(s) 217, 226
BstNI CCWGG 3 cut(s) 390, 687, 852
BstSCI CCNGG 3 cut(s) 388, 685, 850
BstSFI CTRYAG 2 cut(s) 346, 945
BstSLI GKGCMC 1 cut(s) 242
BsuRI GGCC 4 cut(s) 250, 260, 999, 1047
BtgI CCRYGG 2 cut(s) 558, 1068
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 4 cut(s) 249, 260, 506, 749
Cac8I GCNNGC 2 cut(s) 174, 189
CaiI CAGNNNCTG 1 cut(s) 1106
CfoI GCGC 1 cut(s) 891
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 4 cut(s) 4, 258, 386, 997
CsiI ACCWGGT 1 cut(s) 850
Csp6I GTAC 2 cut(s) 1115, 1156
CviAII CATG 5 cut(s) 559, 567, 591, 1049, 1151
CviQI GTAC 2 cut(s) 1115, 1156
DdeI CTNAG 4 cut(s) 207, 252, 404, 483
DraIII CACNNNGTG 1 cut(s) 854
EaeI YGGCCR 1 cut(s) 1045
Eam1104I CTCTTC 1 cut(s) 756
EarI CTCTTC 1 cut(s) 756
Ecl136II GAGCTC 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 558
Eco147I AGGCCT 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 2 cut(s) 4, 386
Eco53kI GAGCTC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 356
EcoRII CCWGG 3 cut(s) 388, 685, 850
EcoT14I CCWWGG 1 cut(s) 558
EcoT38I GRGCYC 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 5 cut(s) 562, 570, 594, 1052, 1154
FaqI GGGAC 2 cut(s) 407, 1050
FatI CATG 5 cut(s) 558, 566, 590, 1048, 1150
FauI CCCGC 1 cut(s) 870
FauNDI CATATG 1 cut(s) 382
FokI GGATG 1 cut(s) 426
FriOI GRGCYC 1 cut(s) 358
GlaI GCGC 1 cut(s) 890
GsaI CCCAGC 2 cut(s) 187, 912
HaeIII GGCC 4 cut(s) 250, 260, 999, 1047
HapII CCGG 1 cut(s) 188
HhaI GCGC 1 cut(s) 891
Hin1I GRCGYC 1 cut(s) 488
Hin1II CATG 5 cut(s) 562, 570, 594, 1052, 1154
Hin6I GCGC 1 cut(s) 889
HinP1I GCGC 1 cut(s) 889
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 2 cut(s) 174, 810
HinfI GANTC 3 cut(s) 377, 494, 739
HpaII CCGG 1 cut(s) 188
HphI GGTGA 4 cut(s) 323, 350, 770, 866
Hpy166II GTNNAC 4 cut(s) 274, 314, 749, 1156
Hpy188I TCNGA 9 cut(s) 299, 323, 407, 486, 493, 683, 738, 793, 865
Hpy188III TCNNGA 1 cut(s) 1008
Hpy8I GTNNAC 4 cut(s) 274, 314, 749, 1156
Hpy99I CGWCG 2 cut(s) 229, 493
HpyAV CCTTC 5 cut(s) 206, 435, 624, 930, 1124
HpyCH4III ACNGT 5 cut(s) 217, 225, 244, 666, 1114
HpyCH4IV ACGT 3 cut(s) 488, 606, 928
HpyCH4V TGCA 6 cut(s) 172, 500, 566, 594, 705, 1060
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 226
HpyF3I CTNAG 4 cut(s) 207, 252, 404, 483
HpySE526I ACGT 3 cut(s) 488, 606, 928
Hsp92I GRCGYC 1 cut(s) 488
Hsp92II CATG 5 cut(s) 562, 570, 594, 1052, 1154
HspAI GCGC 1 cut(s) 889
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
LmnI GCTCC 2 cut(s) 42, 353
LweI GCATC 2 cut(s) 509, 1069
MabI ACCWGGT 1 cut(s) 850
MaeII ACGT 3 cut(s) 488, 606, 928
MaeIII GTNAC 2 cut(s) 854, 953
MboII GAAGA 3 cut(s) 426, 773, 1146
MhlI GDGCHC 2 cut(s) 242, 358
MlsI TGGCCA 1 cut(s) 1047
MluCI AATT 3 cut(s) 337, 598, 843
MluNI TGGCCA 1 cut(s) 1047
MlyI GAGTC 1 cut(s) 748
MmeI TCCRAC 3 cut(s) 43, 471, 1144
Mox20I TGGCCA 1 cut(s) 1047
MroNI GCCGGC 1 cut(s) 187
MscI TGGCCA 1 cut(s) 1047
MseI TTAA 3 cut(s) 612, 1041, 1183
MslI CAYNNNNRTG 1 cut(s) 624
Msp20I TGGCCA 1 cut(s) 1047
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 3 cut(s) 390, 687, 852
MvaI CCWGG 3 cut(s) 390, 687, 852
MwoI GCNNNNNNNGC 2 cut(s) 217, 226
NaeI GCCGGC 1 cut(s) 189
NcoI CCATGG 1 cut(s) 558
NdeI CATATG 1 cut(s) 382
NgoMIV GCCGGC 1 cut(s) 187
NlaIII CATG 5 cut(s) 562, 570, 594, 1052, 1154
NlaIV GGNNCC 2 cut(s) 219, 647
NmuCI GTSAC 2 cut(s) 854, 953
OliI CACNNNNGTG 1 cut(s) 624
PceI AGGCCT 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PdiI GCCGGC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 377, 494
PflMI CCANNNNNTGG 1 cut(s) 131
PleI GAGTC 1 cut(s) 747
PpsI GAGTC 1 cut(s) 747
Psp124BI GAGCTC 1 cut(s) 358
Psp6I CCWGG 3 cut(s) 388, 685, 850
PspFI CCCAGC 2 cut(s) 183, 908
PspGI CCWGG 3 cut(s) 388, 685, 850
PspN4I GGNNCC 2 cut(s) 219, 647
PspPI GGNCC 4 cut(s) 4, 258, 386, 997
PstNI CAGNNNCTG 1 cut(s) 1106
RsaI GTAC 2 cut(s) 1116, 1157
RsaNI GTAC 2 cut(s) 1115, 1156
RseI CAYNNNNRTG 1 cut(s) 624
SacI GAGCTC 1 cut(s) 358
SaqAI TTAA 3 cut(s) 612, 1041, 1183
Sau96I GGNCC 4 cut(s) 4, 258, 386, 997
SchI GAGTC 1 cut(s) 748
ScrFI CCNGG 3 cut(s) 390, 687, 852
SduI GDGCHC 2 cut(s) 242, 358
SexAI ACCWGGT 1 cut(s) 850
SfaNI GCATC 2 cut(s) 509, 1069
SfcI CTRYAG 2 cut(s) 346, 945
SinI GGWCC 2 cut(s) 4, 386
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 540
SmoI CTYRAG 1 cut(s) 540
Sse9I AATT 3 cut(s) 337, 598, 843
SseBI AGGCCT 1 cut(s) 250
SsiI CCGC 3 cut(s) 89, 467, 877
SstI GAGCTC 1 cut(s) 358
StuI AGGCCT 1 cut(s) 250
StyD4I CCNGG 3 cut(s) 388, 685, 850
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 5 cut(s) 217, 225, 244, 666, 1114
TaiI ACGT 3 cut(s) 491, 609, 931
TasI AATT 3 cut(s) 337, 598, 843
TatI WGTACW 1 cut(s) 1114
TfiI GAWTC 2 cut(s) 377, 494
Tru1I TTAA 3 cut(s) 612, 1041, 1183
Tru9I TTAA 3 cut(s) 612, 1041, 1183
TscAI CASTG 4 cut(s) 249, 260, 513, 749
TseFI GTSAC 2 cut(s) 854, 953
Tsp45I GTSAC 2 cut(s) 854, 953
TspDTI ATGAA 3 cut(s) 358, 579, 1065
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 4 cut(s) 249, 260, 513, 749
Van91I CCANNNNNTGG 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 4, 386
XapI RAATTY 2 cut(s) 337, 843
ZraI GACGTC 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.