Rw7G017870

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0016854
Physical Location & Seq
Reverse (-)
19019353 .. 19023776
4424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017870.1

Sequence Viewer

Length: 1344 bp
ATGGACCATCACCACCTCCAACAGCTTCACCAACAGCAACTCCTCCAACACCACCACCACCACCAACAACAACAACACTTCCAACCCCCACAACAACCACACTACCATTACAATACCAATACCCACCAATCTTACTACCCTCCTCAATATCAATACCCACAACAACAACAACTACAACAAAATGGTTATCACCCATCAAACTATACCAATCTCTATCCCCAGCAGGCTTATCCCCAGTCCGCGGTGCCTCGACCACCTGAGCTTCCGGTCCCGCCAGCGGTGGCTGTGCTGTCTCGTTTGGTGCAATACTCAGGAGCAGTGGGTTCTCAATGGAACACTCCACCAATGGTTGGCCAACCTCCATATAGGGGTATCGGTGAAGTGGGTGGTGAACTATTCAGAGGACATCAAGGAAATTTTGGCTACAGCGGAGCTCACCCATCTTTCATTGGGGGATCACATGGTCGAGGTAGGGGTGGTTCTTGGCTTTTAGTGGAACATGGTGTCCCTTCAACATCTTCTCATCCTCCCCATCAGACATACCAATCTCCGGTAACGCTGACACCTCAGAAGTCGGAATCTGCATCAGCACTGAAAACGGAAGTTCCAAACTACCAAAAACCTCAAGTTGCTCAAAAAACCACGGTTACTTGGTGTGAAGTTTGTAATGCTTCATGCGCTAATTTGGACGTTCTTAAACAGCACCAAAATGGAAAGCGACATCAAAGGAACCTGAGAAAAATGGAAAGGTTGAAAAACGGTATCAGAACAGTGGCCAAATTGCAGGGCCAACAGCTTTGCACTTCTAATACAAAGCTTGAAGTGCCTCATCAGACTCAGTGTGAACAAGACGATGAAGAGAAAAACACAACAAAGGATATACCATACGAACCTGTTGGCTATGAAAATTCAAGGGAAACTGGAAAACAAAATAAGAACCCCGGACAGCCTGAAATTCCACCAGGCGATGATGGGTCTGACAATGTGAAGCGTGGTAAGAAGCGCAAGAAAACGAAAACTCCGAAGCAGTCAGTCAAACCTTCCAAATGTAAAGTCGTAATTCCGATAGTTTGTGACTTGTGTAATGTCAAGTGTGACAAGCAGGCTTTTTTCGATCGCCATCTTTCAGGAAAGAAGCATGTTGCCAAGACTGATAAGGTGATTCCAGTACCCCAAGCTCAAAGATGGGAAGATATGAAAAGAGGGCATGTTACATTGTTAATATCTGAAGATGGTAACAGTGACCGGCTTGGTTTGATACTTCGATATACAAGAGATGAAGAGAATCCCCTGACTTCCAAAAGAAGAATCCCAGTTTTGAACTTTGATGGGCTCAAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

447

Amino Acids

50.62

Weight (kDa)

9.41

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 218 - 241 5.4e-07 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016854)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18930
prunus_persica Prupe.5G069800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203321
rosa_laevigata RLG00000003535
rosa_multiflora Rmu_sc0002286.1_g000001 Rmu_sc0003582.1_g000006
rosa_roxburghii Rroxscaffold_3G00253880
rosa_rugosa Rorug07G0075500 Rorug07G0075600
rosa_samantha Rh7AG205200 Rh7BG204600 Rh7CG216400 Rh7DG211700
rosa_wichuraiana Rw7G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 350
AccII CGCG 1 cut(s) 242
AciI CCGC 5 cut(s) 240, 242, 272, 278, 429
AclWI GGATC 1 cut(s) 463
AcoI YGGCCR 2 cut(s) 352, 774
AcsI RAATTY 3 cut(s) 415, 907, 954
AcuI CTGAAG 1 cut(s) 1248
AfaI GTAC 1 cut(s) 1170
AfiI CCNNNNNNNGG 5 cut(s) 241, 277, 350, 368, 550
AgsI TTSAA 5 cut(s) 513, 754, 821, 912, 1321
AjnI CCWGG 1 cut(s) 961
AloI GAACNNNNNNTCC 2 cut(s) 489, 521
AluBI AGCT 6 cut(s) 25, 262, 434, 796, 817, 1178
AluI AGCT 6 cut(s) 25, 262, 434, 796, 817, 1178
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 1 cut(s) 297
AlwI GGATC 1 cut(s) 463
AoxI GGCC 3 cut(s) 352, 774, 787
ApoI RAATTY 3 cut(s) 415, 907, 954
ArsI GACNNNNNNTTYG 2 cut(s) 1038, 1070
AspLEI GCGC 2 cut(s) 680, 1005
AspS9I GGNCC 3 cut(s) 4, 268, 787
AsuC2I CCSGG 1 cut(s) 942
AsuHPI GGTGA 6 cut(s) 20, 182, 389, 401, 428, 1171
AvaII GGWCC 2 cut(s) 4, 268
BalI TGGCCA 2 cut(s) 354, 776
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 2 cut(s) 436, 1335
Bbv12I GWGCWC 1 cut(s) 436
BccI CCATC 9 cut(s) 15, 202, 448, 540, 965, 1128, 1179, 1226, 1322
BciT130I CCWGG 1 cut(s) 963
BcnI CCSGG 1 cut(s) 942
BcoDI GTCTC 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 424
Bme1390I CCNGG 2 cut(s) 942, 963
Bme18I GGWCC 2 cut(s) 4, 268
BmgT120I GGNCC 3 cut(s) 4, 268, 787
BmiI GGNNCC 3 cut(s) 246, 270, 731
BmrFI CCNGG 2 cut(s) 942, 963
BmrI ACTGGG 2 cut(s) 229, 1307
BmsI GCATC 1 cut(s) 593
BmuI ACTGGG 2 cut(s) 229, 1307
Bpu10I CCTNAGC 1 cut(s) 258
BpuEI CTTGAG 2 cut(s) 609, 1319
BpuMI CCSGG 1 cut(s) 942
BsaBI GATNNNNATC 1 cut(s) 1119
BsaJI CCNNGG 3 cut(s) 240, 642, 940
BsaWI WCCGGW 2 cut(s) 265, 550
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 1003, 1033
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 277, 350, 368, 550
Bse118I RCCGGY 1 cut(s) 1245
Bse1I ACTGG 4 cut(s) 235, 925, 1166, 1313
Bse8I GATNNNNATC 1 cut(s) 1119
BseBI CCWGG 1 cut(s) 963
BseDI CCNNGG 3 cut(s) 240, 642, 940
BseGI GGATG 1 cut(s) 523
BseJI GATNNNNATC 1 cut(s) 1119
BseLI CCNNNNNNNGG 5 cut(s) 241, 277, 350, 368, 550
BseMII CTCAG 5 cut(s) 249, 324, 581, 725, 851
BseNI ACTGG 4 cut(s) 235, 925, 1166, 1313
BseRI GAGGAG 2 cut(s) 32, 132
BseYI CCCAGC 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 1117
BshFI GGCC 3 cut(s) 354, 776, 789
BshNI GGYRCC 1 cut(s) 244
BsiEI CGRYCG 1 cut(s) 1117
BsiHKAI GWGCWC 1 cut(s) 436
BsiSI CCGG 4 cut(s) 266, 551, 942, 1246
BslFI GGGAC 2 cut(s) 254, 491
BslI CCNNNNNNNGG 5 cut(s) 241, 277, 350, 368, 550
BsmAI GTCTC 1 cut(s) 297
BsmFI GGGAC 2 cut(s) 254, 491
BsnI GGCC 3 cut(s) 354, 776, 789
Bsp1286I GDGCHC 2 cut(s) 436, 1335
Bsp143I GATC 2 cut(s) 455, 1114
BspACI CCGC 5 cut(s) 240, 242, 272, 278, 429
BspANI GGCC 3 cut(s) 354, 776, 789
BspCNI CTCAG 5 cut(s) 250, 323, 580, 726, 850
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 3 cut(s) 246, 270, 731
BspPI GGATC 1 cut(s) 463
BspT107I GGYRCC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 1245
BsrI ACTGG 4 cut(s) 235, 925, 1166, 1313
BssAI RCCGGY 1 cut(s) 1245
BssECI CCNNGG 3 cut(s) 240, 642, 940
BssMI GATC 2 cut(s) 455, 1114
Bst2UI CCWGG 1 cut(s) 963
Bst4CI ACNGT 4 cut(s) 646, 761, 772, 1241
Bst6I CTCTTC 2 cut(s) 852, 1275
BstC8I GCNNGC 3 cut(s) 225, 276, 1104
BstDEI CTNAG 5 cut(s) 258, 310, 567, 734, 837
BstDSI CCRYGG 2 cut(s) 240, 642
BstF5I GGATG 1 cut(s) 523
BstFNI CGCG 1 cut(s) 242
BstHHI GCGC 2 cut(s) 680, 1005
BstKTI GATC 2 cut(s) 458, 1117
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 2 cut(s) 455, 1114
BstMCI CGRYCG 1 cut(s) 1117
BstMWI GCNNNNNNNGC 2 cut(s) 677, 823
BstNI CCWGG 1 cut(s) 963
BstNSI RCATGY 2 cut(s) 1142, 1211
BstSCI CCNGG 2 cut(s) 940, 961
BstSFI CTRYAG 1 cut(s) 424
BstUI CGCG 1 cut(s) 242
BsuRI GGCC 3 cut(s) 354, 776, 789
BtgI CCRYGG 2 cut(s) 240, 642
BtgZI GCGATG 1 cut(s) 981
BtsCI GGATG 1 cut(s) 523
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 5 cut(s) 324, 590, 777, 845, 1246
Cac8I GCNNGC 3 cut(s) 225, 276, 1104
CfoI GCGC 2 cut(s) 680, 1005
Cfr10I RCCGGY 1 cut(s) 1245
Cfr13I GGNCC 3 cut(s) 4, 268, 787
Cfr42I CCGCGG 1 cut(s) 243
Csp6I GTAC 1 cut(s) 1169
CviAII CATG 5 cut(s) 461, 500, 675, 1139, 1208
CviQI GTAC 1 cut(s) 1169
DdeI CTNAG 5 cut(s) 258, 310, 567, 734, 837
DpnI GATC 2 cut(s) 457, 1116
DpnII GATC 2 cut(s) 455, 1114
EaeI YGGCCR 2 cut(s) 352, 774
Eam1104I CTCTTC 2 cut(s) 852, 1275
EarI CTCTTC 2 cut(s) 852, 1275
Ecl136II GAGCTC 1 cut(s) 434
Eco24I GRGCYC 2 cut(s) 436, 1335
Eco47I GGWCC 2 cut(s) 4, 268
Eco53kI GAGCTC 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 1248
EcoICRI GAGCTC 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 961
EcoT38I GRGCYC 2 cut(s) 436, 1335
FaeI CATG 5 cut(s) 464, 503, 678, 1142, 1211
FaqI GGGAC 2 cut(s) 254, 491
FatI CATG 5 cut(s) 460, 499, 674, 1138, 1207
FauI CCCGC 1 cut(s) 279
FokI GGATG 1 cut(s) 510
FriOI GRGCYC 2 cut(s) 436, 1335
GlaI GCGC 2 cut(s) 679, 1004
GsaI CCCAGC 1 cut(s) 223
HaeIII GGCC 3 cut(s) 354, 776, 789
HapII CCGG 4 cut(s) 266, 551, 942, 1246
HhaI GCGC 2 cut(s) 680, 1005
Hin1II CATG 5 cut(s) 464, 503, 678, 1142, 1211
Hin6I GCGC 2 cut(s) 678, 1003
HinP1I GCGC 2 cut(s) 678, 1003
HindIII AAGCTT 1 cut(s) 815
HinfI GANTC 5 cut(s) 578, 835, 1162, 1285, 1308
HpaII CCGG 4 cut(s) 266, 551, 942, 1246
HphI GGTGA 6 cut(s) 20, 182, 389, 401, 428, 1171
Hpy166II GTNNAC 2 cut(s) 392, 845
Hpy188III TCNNGA 3 cut(s) 312, 1128, 1336
Hpy8I GTNNAC 2 cut(s) 392, 845
HpyAV CCTTC 2 cut(s) 519, 1050
HpyCH4III ACNGT 4 cut(s) 646, 761, 772, 1241
HpyCH4IV ACGT 1 cut(s) 690
HpyCH4V TGCA 4 cut(s) 304, 584, 784, 801
HpyF10VI GCNNNNNNNGC 2 cut(s) 677, 823
HpyF3I CTNAG 5 cut(s) 258, 310, 567, 734, 837
HpySE526I ACGT 1 cut(s) 690
Hsp92II CATG 5 cut(s) 464, 503, 678, 1142, 1211
HspAI GCGC 2 cut(s) 678, 1003
KspI CCGCGG 1 cut(s) 243
Kzo9I GATC 2 cut(s) 455, 1114
LmnI GCTCC 2 cut(s) 314, 431
LweI GCATC 1 cut(s) 593
MaeII ACGT 1 cut(s) 690
MaeIII GTNAC 7 cut(s) 553, 646, 1073, 1094, 1210, 1235, 1241
MalI GATC 2 cut(s) 457, 1116
MboI GATC 2 cut(s) 455, 1114
MboII GAAGA 6 cut(s) 510, 869, 1202, 1241, 1292, 1317
MhlI GDGCHC 2 cut(s) 436, 1335
MlsI TGGCCA 2 cut(s) 354, 776
MluCI AATT 6 cut(s) 415, 682, 779, 907, 954, 1059
MluNI TGGCCA 2 cut(s) 354, 776
MlyI GAGTC 1 cut(s) 829
MmeI TCCRAC 4 cut(s) 43, 70, 106, 555
Mox20I TGGCCA 2 cut(s) 354, 776
MscI TGGCCA 2 cut(s) 354, 776
MseI TTAA 2 cut(s) 696, 1220
MslI CAYNNNNRTG 1 cut(s) 708
Msp20I TGGCCA 2 cut(s) 354, 776
MspA1I CMGCKG 3 cut(s) 242, 278, 429
MspI CCGG 4 cut(s) 266, 551, 942, 1246
MspR9I CCNGG 2 cut(s) 942, 963
MvaI CCWGG 1 cut(s) 963
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 2 cut(s) 677, 823
NciI CCSGG 1 cut(s) 942
NdeII GATC 2 cut(s) 455, 1114
NlaIII CATG 5 cut(s) 464, 503, 678, 1142, 1211
NlaIV GGNNCC 3 cut(s) 246, 270, 731
NmuCI GTSAC 3 cut(s) 1073, 1094, 1241
NspI RCATGY 2 cut(s) 1142, 1211
PcsI WCGNNNNNNNCGW 1 cut(s) 1019
PfeI GAWTC 4 cut(s) 578, 1162, 1285, 1308
PflMI CCANNNNNTGG 1 cut(s) 350
Ple19I CGATCG 1 cut(s) 1117
PleI GAGTC 1 cut(s) 829
PpsI GAGTC 1 cut(s) 829
Psp124BI GAGCTC 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 961
PspFI CCCAGC 1 cut(s) 219
PspGI CCWGG 1 cut(s) 961
PspN4I GGNNCC 3 cut(s) 246, 270, 731
PspPI GGNCC 3 cut(s) 4, 268, 787
PsrI GAACNNNNNNTAC 2 cut(s) 463, 495
PvuI CGATCG 1 cut(s) 1117
RsaI GTAC 1 cut(s) 1170
RsaNI GTAC 1 cut(s) 1169
RseI CAYNNNNRTG 1 cut(s) 708
SacI GAGCTC 1 cut(s) 436
SacII CCGCGG 1 cut(s) 243
SaqAI TTAA 2 cut(s) 696, 1220
Sau3AI GATC 2 cut(s) 455, 1114
Sau96I GGNCC 3 cut(s) 4, 268, 787
SchI GAGTC 1 cut(s) 829
ScrFI CCNGG 2 cut(s) 942, 963
SduI GDGCHC 2 cut(s) 436, 1335
SfaNI GCATC 1 cut(s) 593
SfcI CTRYAG 1 cut(s) 424
Sfr303I CCGCGG 1 cut(s) 243
SgrBI CCGCGG 1 cut(s) 243
SinI GGWCC 2 cut(s) 4, 268
SmiMI CAYNNNNRTG 1 cut(s) 708
SmlI CTYRAG 2 cut(s) 624, 1334
SmoI CTYRAG 2 cut(s) 624, 1334
Sse9I AATT 6 cut(s) 415, 682, 779, 907, 954, 1059
SsiI CCGC 5 cut(s) 240, 242, 272, 278, 429
SstI GAGCTC 1 cut(s) 436
StyD4I CCNGG 2 cut(s) 940, 961
TaaI ACNGT 4 cut(s) 646, 761, 772, 1241
TaiI ACGT 1 cut(s) 693
TaqI TCGA 4 cut(s) 250, 466, 1113, 1264
TasI AATT 6 cut(s) 415, 682, 779, 907, 954, 1059
TfiI GAWTC 4 cut(s) 578, 1162, 1285, 1308
Tru1I TTAA 2 cut(s) 696, 1220
Tru9I TTAA 2 cut(s) 696, 1220
TscAI CASTG 5 cut(s) 324, 597, 777, 845, 1246
TseFI GTSAC 3 cut(s) 1073, 1094, 1241
Tsp45I GTSAC 3 cut(s) 1073, 1094, 1241
TspDTI ATGAA 6 cut(s) 436, 663, 870, 918, 1211, 1293
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 5 cut(s) 324, 597, 777, 845, 1246
Van91I CCANNNNNTGG 1 cut(s) 350
VpaK11BI GGWCC 2 cut(s) 4, 268
XapI RAATTY 3 cut(s) 415, 907, 954
XceI RCATGY 2 cut(s) 1142, 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.