Prupe.5G069800_v2.0.a1

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016854
Physical Location & Seq
Reverse (-)
8369961 .. 8373702
3742 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G069800.1

Sequence Viewer

Length: 1329 bp
ATGGACCAACAACATCAACTGCTCCTTGCTCAACAACAACAGCTGCTTTATCAACAGCTCCAAGCTCTTCAACAACAAGAAGGTTTTATTGCATACCAATCAAACCAATCTTTCTGCTTTCGTTTTCAACACCCAAAACAACAGCAATACCACCAGCAGCAACAAGGTTATTACCAATCGAACTATGCCAATGTCTACCAGCAGCAGCAGCAGCAGCTGCTGCAGCAACAACAACCTTATCCACCACAACCTATCCAACTTTCTCAATCACGACTAGTCCAGGCACCTGGGATTCCGGTACTTCCGGGGCTGGACCCCACCGAGGCTGTGCTGTCTCGACTGGCGCAATTTTCAGCGTCCAGAATGGGAGCAGTGGCAGAGAGGCCTTTGCATCAACCGGTTGGTCAGCCTCCATACAGTAGTGGTGGTGAAAGGGGTGGTGAGCCATTCAAAGGACACCAAGGAAATTTTGGCTACAACCACCTTAGACCCAGTGGAGCTGGCCCATCTTTCATTGGAAGACCACATGGTTGTGGTAGTGGTGGCCCTAAGCATTTCTCACAACATGGTTTCCCTTCAACATCTTCGCATCCAGAATCTTCAGTTGCTCCAGCAACACTTCCACCTGAGAAATCAGAATCAGCGTCAGCACTTAAAACAGAAGTTCCAAACAAAACTAAAGTTCGGAACAACCAGAGTCCCCAGGTTGCTTGGTGTGAAATTTGTAAGGCCGCGTGCAATAGTTTGGAAATTCTTGAGAATCACAAGAATGGAAAGCGACATAAGAAGAACATGAAGAAGATGGAAAAGATGAAAAATGCTATCAGATCAGGGGATGAATTACAGGGCCAACAGAATCGCACATCTAATTCAAATCTGGAAGTGTCTCATTTGACTCAGTGTGCACAGGATGGTGAACAGAACAAACCAACAGAAAATTTACCCACTGAAGCTGTTAACCATGTAAAATCTGCGGAAACTGAACAGCAAAATAATATCCCGGGGCAGCAGCATGGTCCAAAGCGCAAGAAGAAGCACAAGATTACTTCTGAAACTGAAACTAAGAAGATTGTTATTCCGCTAATCTGTGATATATGCAACGTCAAGTGTGATAGGCAGGGGATTTTTGACCACCATCTTTCTGGAAAGAAGCATGTTGCTAACTTCAAAAGATTTAAAAGTAGCCAAGCTATATGTGGGCCAGTCGGGCTTCAAGCTCTTTACCCCCCTAACCCAATTGCTCAGACTATTTTCCATCCCCAAGAAGGGAAATACATGCCTCCCCATGTGTACCAAGAAGTGCCGGTGGAAACAAGTTCAAGTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

443

Amino Acids

49.29

Weight (kDa)

9.25

Isoelectric Point (pI)

66.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016854)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18930
prunus_persica Prupe.5G069800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203321
rosa_laevigata RLG00000003535
rosa_multiflora Rmu_sc0002286.1_g000001 Rmu_sc0003582.1_g000006
rosa_roxburghii Rroxscaffold_3G00253880
rosa_rugosa Rorug07G0075500 Rorug07G0075600
rosa_samantha Rh7AG205200 Rh7BG204600 Rh7CG216400 Rh7DG211700
rosa_wichuraiana Rw7G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 283
AccI GTMKAC 1 cut(s) 195
AccII CGCG 1 cut(s) 734
AciI CCGC 3 cut(s) 732, 974, 1079
AcsI RAATTY 4 cut(s) 466, 720, 750, 937
AcuI CTGAAG 2 cut(s) 585, 969
AfaI GTAC 2 cut(s) 300, 1292
AfiI CCNNNNNNNGG 4 cut(s) 322, 452, 1265, 1266
AgeI ACCGGT 1 cut(s) 397
AgsI TTSAA 8 cut(s) 71, 128, 451, 579, 873, 1168, 1214, 1320
AhlI ACTAGT 1 cut(s) 274
AjnI CCWGG 3 cut(s) 279, 286, 702
AluBI AGCT 8 cut(s) 43, 58, 65, 217, 500, 953, 1190, 1217
AluI AGCT 8 cut(s) 43, 58, 65, 217, 500, 953, 1190, 1217
Alw21I GWGCWC 1 cut(s) 907
Alw26I GTCTC 2 cut(s) 339, 891
Alw44I GTGCAC 1 cut(s) 903
AlwNI CAGNNNCTG 2 cut(s) 217, 220
Ama87I CYCGRG 1 cut(s) 1000
AoxI GGCC 6 cut(s) 383, 502, 544, 729, 847, 1199
ApaLI GTGCAC 1 cut(s) 903
ApoI RAATTY 4 cut(s) 466, 720, 750, 937
AsiGI ACCGGT 1 cut(s) 397
AspLEI GCGC 2 cut(s) 346, 1026
AspS9I GGNCC 7 cut(s) 4, 313, 503, 545, 847, 1016, 1199
AsuC2I CCSGG 3 cut(s) 306, 1001, 1002
AsuHPI GGTGA 3 cut(s) 440, 452, 926
AvaI CYCGRG 1 cut(s) 1000
AvaII GGWCC 3 cut(s) 4, 313, 1016
BaeGI GKGCMC 1 cut(s) 907
BanI GGYRCC 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 526
Bbv12I GWGCWC 1 cut(s) 907
BccI CCATC 5 cut(s) 514, 796, 905, 1143, 1263
BciT130I CCWGG 3 cut(s) 281, 288, 704
BcnI CCSGG 3 cut(s) 306, 1001, 1002
BcoDI GTCTC 2 cut(s) 339, 891
BcuI ACTAGT 1 cut(s) 274
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 221
BglI GCCNNNNNGGC 1 cut(s) 1207
Bme1390I CCNGG 6 cut(s) 281, 288, 306, 704, 1001, 1002
Bme18I GGWCC 3 cut(s) 4, 313, 1016
BmeT110I CYCGRG 1 cut(s) 1000
BmgT120I GGNCC 7 cut(s) 4, 313, 503, 545, 847, 1016, 1199
BmiI GGNNCC 2 cut(s) 285, 315
BmrFI CCNGG 6 cut(s) 281, 288, 306, 704, 1001, 1002
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 2 cut(s) 400, 598
BmuI ACTGGG 1 cut(s) 486
BpiI GAAGAC 1 cut(s) 526
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 549
BpuEI CTTGAG 1 cut(s) 776
BpuMI CCSGG 3 cut(s) 306, 1001, 1002
BsaJI CCNNGG 7 cut(s) 287, 305, 321, 460, 702, 1000, 1001
BsaWI WCCGGW 2 cut(s) 295, 397
Bsc4I CCNNNNNNNGG 4 cut(s) 322, 452, 1265, 1266
Bse118I RCCGGY 2 cut(s) 397, 1303
Bse1I ACTGG 3 cut(s) 345, 492, 1202
BseBI CCWGG 3 cut(s) 281, 288, 704
BseDI CCNNGG 7 cut(s) 287, 305, 321, 460, 702, 1000, 1001
BseGI GGATG 4 cut(s) 589, 841, 916, 1255
BseLI CCNNNNNNNGG 4 cut(s) 322, 452, 1265, 1266
BseMII CTCAG 3 cut(s) 618, 911, 1256
BseNI ACTGG 3 cut(s) 345, 492, 1202
BseSI GKGCMC 1 cut(s) 907
Bsh1236I CGCG 1 cut(s) 734
BshFI GGCC 6 cut(s) 385, 504, 546, 731, 849, 1201
BshNI GGYRCC 1 cut(s) 283
BshTI ACCGGT 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 907
BsiHKCI CYCGRG 1 cut(s) 1000
BsiSI CCGG 5 cut(s) 296, 305, 398, 1001, 1304
BslFI GGGAC 2 cut(s) 684, 1308
BslI CCNNNNNNNGG 4 cut(s) 322, 452, 1265, 1266
BsmAI GTCTC 2 cut(s) 339, 891
BsmFI GGGAC 2 cut(s) 684, 1308
BsnI GGCC 6 cut(s) 385, 504, 546, 731, 849, 1201
BsoBI CYCGRG 1 cut(s) 1000
Bsp1286I GDGCHC 1 cut(s) 907
Bsp143I GATC 1 cut(s) 827
BspACI CCGC 3 cut(s) 732, 974, 1079
BspANI GGCC 6 cut(s) 385, 504, 546, 731, 849, 1201
BspCNI CTCAG 3 cut(s) 619, 910, 1255
BspFNI CGCG 1 cut(s) 734
BspLI GGNNCC 2 cut(s) 285, 315
BspMAI CTGCAG 1 cut(s) 225
BspQI GCTCTTC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 283
BsrFI RCCGGY 2 cut(s) 397, 1303
BsrI ACTGG 3 cut(s) 345, 492, 1202
BssAI RCCGGY 2 cut(s) 397, 1303
BssECI CCNNGG 7 cut(s) 287, 305, 321, 460, 702, 1000, 1001
BssMI GATC 1 cut(s) 827
BssT1I CCWWGG 1 cut(s) 460
Bst2UI CCWGG 3 cut(s) 281, 288, 704
Bst4CI ACNGT 1 cut(s) 419
Bst6I CTCTTC 1 cut(s) 72
BstAPI GCANNNNNTGC 2 cut(s) 217, 220
BstC8I GCNNGC 2 cut(s) 502, 736
BstDEI CTNAG 6 cut(s) 485, 549, 627, 897, 1062, 1242
BstF5I GGATG 4 cut(s) 589, 841, 916, 1255
BstFNI CGCG 1 cut(s) 734
BstHHI GCGC 2 cut(s) 346, 1026
BstKTI GATC 1 cut(s) 830
BstMAI GTCTC 2 cut(s) 339, 891
BstMBI GATC 1 cut(s) 827
BstMWI GCNNNNNNNGC 7 cut(s) 208, 211, 214, 217, 220, 223, 1207
BstNI CCWGG 3 cut(s) 281, 288, 704
BstNSI RCATGY 2 cut(s) 1157, 1279
BstSCI CCNGG 6 cut(s) 279, 286, 304, 702, 999, 1000
BstSFI CTRYAG 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 907
BstUI CGCG 1 cut(s) 734
BstV2I GAAGAC 1 cut(s) 526
BstXI CCANNNNNNTGG 2 cut(s) 287, 1142
BsuRI GGCC 6 cut(s) 385, 504, 546, 731, 849, 1201
BtsCI GGATG 4 cut(s) 589, 841, 916, 1255
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 4 cut(s) 378, 499, 905, 945
Cac8I GCNNGC 2 cut(s) 502, 736
CaiI CAGNNNCTG 2 cut(s) 217, 220
CfoI GCGC 2 cut(s) 346, 1026
Cfr10I RCCGGY 2 cut(s) 397, 1303
Cfr13I GGNCC 7 cut(s) 4, 313, 503, 545, 847, 1016, 1199
Cfr9I CCCGGG 1 cut(s) 1000
CseI GACGC 2 cut(s) 345, 633
Csp6I GTAC 2 cut(s) 299, 1291
CspAI ACCGGT 1 cut(s) 397
CviAII CATG 8 cut(s) 527, 566, 793, 962, 1013, 1154, 1276, 1286
CviQI GTAC 2 cut(s) 299, 1291
DdeI CTNAG 6 cut(s) 485, 549, 627, 897, 1062, 1242
DpnI GATC 1 cut(s) 829
DpnII GATC 1 cut(s) 827
DraI TTTAAA 1 cut(s) 1177
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 460
Eco147I AGGCCT 1 cut(s) 385
Eco47I GGWCC 3 cut(s) 4, 313, 1016
Eco57I CTGAAG 2 cut(s) 585, 969
Eco88I CYCGRG 1 cut(s) 1000
EcoRII CCWGG 3 cut(s) 279, 286, 702
EcoT14I CCWWGG 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 8 cut(s) 530, 569, 796, 965, 1016, 1157, 1279, 1289
FaqI GGGAC 2 cut(s) 684, 1308
FatI CATG 8 cut(s) 526, 565, 792, 961, 1012, 1153, 1275, 1285
FblI GTMKAC 1 cut(s) 195
FokI GGATG 4 cut(s) 576, 848, 923, 1242
FspBI CTAG 1 cut(s) 275
GlaI GCGC 2 cut(s) 345, 1025
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 6 cut(s) 385, 504, 546, 731, 849, 1201
HapII CCGG 5 cut(s) 296, 305, 398, 1001, 1304
HgaI GACGC 2 cut(s) 345, 633
HhaI GCGC 2 cut(s) 346, 1026
Hin1II CATG 8 cut(s) 530, 569, 796, 965, 1016, 1157, 1279, 1289
Hin6I GCGC 2 cut(s) 344, 1024
HinP1I GCGC 2 cut(s) 344, 1024
HincII GTYRAC 1 cut(s) 958
HindII GTYRAC 1 cut(s) 958
HinfI GANTC 7 cut(s) 292, 596, 638, 697, 760, 856, 895
HpaI GTTAAC 1 cut(s) 958
HpaII CCGG 5 cut(s) 296, 305, 398, 1001, 1304
HphI GGTGA 3 cut(s) 440, 452, 926
Hpy166II GTNNAC 5 cut(s) 196, 905, 917, 958, 1291
Hpy188I TCNGA 5 cut(s) 637, 687, 827, 1051, 1245
Hpy188III TCNNGA 7 cut(s) 270, 336, 360, 593, 755, 878, 1143
Hpy8I GTNNAC 5 cut(s) 196, 905, 917, 958, 1291
HpyAV CCTTC 3 cut(s) 74, 585, 1259
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 1 cut(s) 1101
HpyCH4V TGCA 6 cut(s) 92, 223, 391, 738, 905, 1098
HpyF10VI GCNNNNNNNGC 7 cut(s) 208, 211, 214, 217, 220, 223, 1207
HpyF3I CTNAG 6 cut(s) 485, 549, 627, 897, 1062, 1242
HpySE526I ACGT 1 cut(s) 1101
Hsp92II CATG 8 cut(s) 530, 569, 796, 965, 1016, 1157, 1279, 1289
HspAI GCGC 2 cut(s) 344, 1024
KspAI GTTAAC 1 cut(s) 958
Kzo9I GATC 1 cut(s) 827
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 5 cut(s) 27, 63, 368, 497, 613
LweI GCATC 2 cut(s) 400, 598
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 1101
MalI GATC 1 cut(s) 829
MboI GATC 1 cut(s) 827
MboII GAAGA 9 cut(s) 59, 531, 576, 591, 799, 808, 811, 1042, 1078
MfeI CAATTG 1 cut(s) 1236
MhlI GDGCHC 1 cut(s) 907
MluCI AATT 8 cut(s) 347, 466, 720, 750, 839, 868, 937, 1236
MlyI GAGTC 2 cut(s) 706, 889
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 4 cut(s) 316, 375, 420, 1290
MseI TTAA 3 cut(s) 654, 957, 1176
MslI CAYNNNNRTG 2 cut(s) 531, 768
MspA1I CMGCKG 2 cut(s) 43, 217
MspI CCGG 5 cut(s) 296, 305, 398, 1001, 1304
MspR9I CCNGG 6 cut(s) 281, 288, 306, 704, 1001, 1002
MunI CAATTG 1 cut(s) 1236
MvaI CCWGG 3 cut(s) 281, 288, 704
MvnI CGCG 1 cut(s) 734
MwoI GCNNNNNNNGC 7 cut(s) 208, 211, 214, 217, 220, 223, 1207
NciI CCSGG 3 cut(s) 306, 1001, 1002
NdeII GATC 1 cut(s) 827
NlaIII CATG 8 cut(s) 530, 569, 796, 965, 1016, 1157, 1279, 1289
NlaIV GGNNCC 2 cut(s) 285, 315
NspI RCATGY 2 cut(s) 1157, 1279
PceI AGGCCT 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 72
PfeI GAWTC 5 cut(s) 292, 596, 638, 760, 856
PinAI ACCGGT 1 cut(s) 397
PleI GAGTC 2 cut(s) 705, 889
PpsI GAGTC 2 cut(s) 705, 889
Psp6I CCWGG 3 cut(s) 279, 286, 702
PspGI CCWGG 3 cut(s) 279, 286, 702
PspN4I GGNNCC 2 cut(s) 285, 315
PspPI GGNCC 7 cut(s) 4, 313, 503, 545, 847, 1016, 1199
PstI CTGCAG 1 cut(s) 225
PstNI CAGNNNCTG 2 cut(s) 217, 220
PvuII CAGCTG 2 cut(s) 43, 217
RsaI GTAC 2 cut(s) 300, 1292
RsaNI GTAC 2 cut(s) 299, 1291
RseI CAYNNNNRTG 2 cut(s) 531, 768
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 3 cut(s) 654, 957, 1176
Sau3AI GATC 1 cut(s) 827
Sau96I GGNCC 7 cut(s) 4, 313, 503, 545, 847, 1016, 1199
SchI GAGTC 2 cut(s) 706, 889
ScrFI CCNGG 6 cut(s) 281, 288, 306, 704, 1001, 1002
SduI GDGCHC 1 cut(s) 907
SfaNI GCATC 2 cut(s) 400, 598
SfcI CTRYAG 1 cut(s) 221
SinI GGWCC 3 cut(s) 4, 313, 1016
SmaI CCCGGG 1 cut(s) 1002
SmiMI CAYNNNNRTG 2 cut(s) 531, 768
SmlI CTYRAG 1 cut(s) 755
SmoI CTYRAG 1 cut(s) 755
SpeI ACTAGT 1 cut(s) 274
Sse9I AATT 8 cut(s) 347, 466, 720, 750, 839, 868, 937, 1236
SseBI AGGCCT 1 cut(s) 385
SsiI CCGC 3 cut(s) 732, 974, 1079
SspMI CTAG 1 cut(s) 275
StuI AGGCCT 1 cut(s) 385
StyD4I CCNGG 6 cut(s) 279, 286, 304, 702, 999, 1000
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 1 cut(s) 1104
TaqI TCGA 2 cut(s) 179, 337
TasI AATT 8 cut(s) 347, 466, 720, 750, 839, 868, 937, 1236
TauI GCSGC 1 cut(s) 734
TfiI GAWTC 5 cut(s) 292, 596, 638, 760, 856
Tru1I TTAA 3 cut(s) 654, 957, 1176
Tru9I TTAA 3 cut(s) 654, 957, 1176
TscAI CASTG 4 cut(s) 378, 499, 905, 952
TspDTI ATGAA 4 cut(s) 502, 809, 827, 852
TspMI CCCGGG 1 cut(s) 1000
TspRI CASTG 4 cut(s) 378, 499, 905, 952
VneI GTGCAC 1 cut(s) 903
VpaK11BI GGWCC 3 cut(s) 4, 313, 1016
XapI RAATTY 4 cut(s) 466, 720, 750, 937
XceI RCATGY 2 cut(s) 1157, 1279
XcmI CCANNNNNNNNNTGG 3 cut(s) 467, 1139, 1193
XmaI CCCGGG 1 cut(s) 1000
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.