Rh7AG205200

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0016854
Physical Location & Seq
Reverse (-)
18735641 .. 18739587
3947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG205200.1

Sequence Viewer

Length: 1293 bp
ATGGCAACCATGGTGGGAACTGGGAATGGTGGAGTGCCTCGACCACCTGAGCTTCCGGTCCCGCCAGCGGTGGCTGTGCTGTCTCGTTTGGTGCAATACTCAGGAGCAGTGGGGTCTCAATGGAACACTCCACCAATGGTTGGCCAACCTCCATATAGGGGTATCGGTGAAGTGGGTGGTGAACTATTCAGAGGACATCAAGGAAATTTTGGCTACAGCGGAGCTCACCCATCTTTCATTGGGGGATCACATGGTCGAGGTAGGGGTGGTTCTTGGCTTTTAGTGGAACATGGTGTCCCTTCAACATCTTCTCATCCTCCCCATCAGACATACCAATCTCCGGTAACGCTGACACCTCAGAAGTCGGAATCTGCATCAGCACTGAAAACGGAAGTTCCAAACTACCAAAAACCTCAAGTTGCTCAAAAAACCACAGTTACTTGGTGTGAAGTTTGTAATGCTTCATGCGCTAATTTGGACATTCTTAAACAGCACCAAAATGGAAAGCGACATCAAAGGAACCTGAGAAAAATGGAAAGGTTGAAAAATGGTATCAGAACAGTGGCCAAATTGCAGGGCCAACAGCTTTGCACTTCTAATACAAAGCTTGAAGTGCCTCATCAGACTCAGTGTGAACAAGACGATGAAGAGAAAAACACAACAAAGGATATACCATACGAACCTGTTGGCTATGAAAATTCAAGGGAAACTGGAAAACAAAATAAGAACCCCGGACAGCCTGAAATTCCACCAGGTGATGGGTCTGACAATGTGAAGTGTGGTAAGAAGCGCAAGAAAACGAAAACTCCGAAGCAGTCAGTCGAACCTTCCAAACGTAAAGTCGTAATTCCGATAGTTTGTGACTTGTGTAATGTCAAGTGTGACAAGCAGGCTTTTTTCGATCGCCATCTTTCAGGAAAGAAGCATGTTGCCAAGTATAAACGATTTAAAGGCCATGAAGCTATGCAACGACCCGTGGGGCTTCAAGTTCTATACCCCCCTAACCCATTGGCTGAAACTATATTCCAACCCCAAGAAGGAAGATATATACCTCCCCATGTGTACCAAGATATACAGGTGGAAACAAGTTCAGATCCCCAATTTCAACAAAATCCAACCTCTGAAGGATCTGAATCCATTCTTGGATGTGGAAGCTCTAGTACCATTACAACAGCTCTAGAAACCAACATCACAACAGAACCGGAAATCAGCCAAGAAGCTACCAATGAGGTCCAACATTTGAATAGTATTTCAGAGACTGGTCAGGGGTCCAATACTTTTTCACAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

430

Amino Acids

47.07

Weight (kDa)

8.77

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 148 - 171 2.8e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016854)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18930
prunus_persica Prupe.5G069800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203321
rosa_laevigata RLG00000003535
rosa_multiflora Rmu_sc0002286.1_g000001 Rmu_sc0003582.1_g000006
rosa_roxburghii Rroxscaffold_3G00253880
rosa_rugosa Rorug07G0075500 Rorug07G0075600
rosa_samantha Rh7AG205200 Rh7BG204600 Rh7CG216400 Rh7DG211700
rosa_wichuraiana Rw7G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 140, 758
AciI CCGC 3 cut(s) 62, 68, 219
AclWI GGATC 3 cut(s) 253, 1088, 1135
AcoI YGGCCR 2 cut(s) 142, 564
AcsI RAATTY 3 cut(s) 205, 697, 744
AcuI CTGAAG 1 cut(s) 1143
AdeI CACNNNGTG 1 cut(s) 755
AfaI GTAC 2 cut(s) 1064, 1162
AfiI CCNNNNNNNGG 6 cut(s) 67, 140, 158, 340, 758, 1037
AgsI TTSAA 7 cut(s) 303, 544, 611, 702, 986, 1106, 1243
AjnI CCWGG 1 cut(s) 751
AjuI GAANNNNNNNTTGG 2 cut(s) 1125, 1157
AloI GAACNNNNNNTCC 2 cut(s) 279, 311
AluBI AGCT 8 cut(s) 52, 224, 586, 607, 962, 1155, 1175, 1220
AluI AGCT 8 cut(s) 52, 224, 586, 607, 962, 1155, 1175, 1220
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 3 cut(s) 87, 120, 1250
AlwI GGATC 3 cut(s) 253, 1088, 1135
AlwNI CAGNNNCTG 1 cut(s) 1259
AoxI GGCC 4 cut(s) 142, 564, 577, 952
ApoI RAATTY 3 cut(s) 205, 697, 744
ArsI GACNNNNNNTTYG 2 cut(s) 825, 857
Asp700I GAANNNNTTC 1 cut(s) 1137
AspLEI GCGC 2 cut(s) 470, 792
AspS9I GGNCC 4 cut(s) 58, 577, 1231, 1269
AsuC2I CCSGG 1 cut(s) 732
AsuHPI GGTGA 4 cut(s) 179, 191, 218, 767
AvaII GGWCC 3 cut(s) 58, 1231, 1269
BalI TGGCCA 2 cut(s) 144, 566
BanII GRGCYC 1 cut(s) 226
BarI GAAGNNNNNNTAC 2 cut(s) 1144, 1176
Bbv12I GWGCWC 1 cut(s) 226
BccI CCATC 4 cut(s) 238, 330, 752, 915
BciT130I CCWGG 1 cut(s) 753
BcnI CCSGG 1 cut(s) 732
BcoDI GTCTC 3 cut(s) 87, 120, 1250
BfaI CTAG 2 cut(s) 1158, 1178
BfmI CTRYAG 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 732, 753
Bme18I GGWCC 3 cut(s) 58, 1231, 1269
BmgT120I GGNCC 4 cut(s) 58, 577, 1231, 1269
BmiI GGNNCC 3 cut(s) 60, 521, 1270
BmrFI CCNGG 2 cut(s) 732, 753
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 383
BmuI ACTGGG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 732
BsaBI GATNNNNATC 2 cut(s) 906, 1132
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 3 cut(s) 9, 730, 975
BsaWI WCCGGW 3 cut(s) 55, 340, 1201
BsaXI ACNNNNNCTCC 2 cut(s) 790, 820
Bsc4I CCNNNNNNNGG 6 cut(s) 67, 140, 158, 340, 758, 1037
Bse1I ACTGG 3 cut(s) 25, 715, 1264
Bse8I GATNNNNATC 2 cut(s) 906, 1132
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 3 cut(s) 9, 730, 975
BseGI GGATG 2 cut(s) 313, 1151
BseJI GATNNNNATC 2 cut(s) 906, 1132
BseLI CCNNNNNNNGG 6 cut(s) 67, 140, 158, 340, 758, 1037
BseMII CTCAG 5 cut(s) 39, 114, 371, 515, 641
BseNI ACTGG 3 cut(s) 25, 715, 1264
Bsh1285I CGRYCG 1 cut(s) 904
BshFI GGCC 4 cut(s) 144, 566, 579, 954
BsiEI CGRYCG 1 cut(s) 904
BsiHKAI GWGCWC 1 cut(s) 226
BsiSI CCGG 4 cut(s) 56, 341, 732, 1202
BslFI GGGAC 2 cut(s) 44, 281
BslI CCNNNNNNNGG 6 cut(s) 67, 140, 158, 340, 758, 1037
BsmAI GTCTC 3 cut(s) 87, 120, 1250
BsmFI GGGAC 2 cut(s) 44, 281
BsnI GGCC 4 cut(s) 144, 566, 579, 954
Bso31I GGTCTC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 4 cut(s) 245, 901, 1093, 1127
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 3 cut(s) 62, 68, 219
BspANI GGCC 4 cut(s) 144, 566, 579, 954
BspCNI CTCAG 5 cut(s) 40, 113, 370, 516, 640
BspLI GGNNCC 3 cut(s) 60, 521, 1270
BspPI GGATC 3 cut(s) 253, 1088, 1135
BspTNI GGTCTC 1 cut(s) 120
BsrI ACTGG 3 cut(s) 25, 715, 1264
BssECI CCNNGG 3 cut(s) 9, 730, 975
BssMI GATC 4 cut(s) 245, 901, 1093, 1127
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 2 cut(s) 436, 562
Bst6I CTCTTC 1 cut(s) 642
BstC8I GCNNGC 2 cut(s) 66, 891
BstDEI CTNAG 5 cut(s) 48, 100, 357, 524, 627
BstDSI CCRYGG 2 cut(s) 9, 975
BstF5I GGATG 2 cut(s) 313, 1151
BstHHI GCGC 2 cut(s) 470, 792
BstKTI GATC 4 cut(s) 248, 904, 1096, 1130
BstMAI GTCTC 3 cut(s) 87, 120, 1250
BstMBI GATC 4 cut(s) 245, 901, 1093, 1127
BstMCI CGRYCG 1 cut(s) 904
BstMWI GCNNNNNNNGC 2 cut(s) 467, 613
BstNI CCWGG 1 cut(s) 753
BstNSI RCATGY 1 cut(s) 929
BstSCI CCNGG 2 cut(s) 730, 751
BstSFI CTRYAG 1 cut(s) 214
BstX2I RGATCY 2 cut(s) 1093, 1127
BstYI RGATCY 2 cut(s) 1093, 1127
BsuRI GGCC 4 cut(s) 144, 566, 579, 954
BtgI CCRYGG 2 cut(s) 9, 975
BtsCI GGATG 2 cut(s) 313, 1151
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 4 cut(s) 114, 380, 567, 635
Cac8I GCNNGC 2 cut(s) 66, 891
CaiI CAGNNNCTG 1 cut(s) 1259
CfoI GCGC 2 cut(s) 470, 792
Cfr13I GGNCC 4 cut(s) 58, 577, 1231, 1269
CsiI ACCWGGT 1 cut(s) 751
Csp6I GTAC 2 cut(s) 1063, 1161
CspCI CAANNNNNGTGG 1 cut(s) 29
CviAII CATG 7 cut(s) 10, 251, 290, 465, 926, 956, 1058
CviQI GTAC 2 cut(s) 1063, 1161
DdeI CTNAG 5 cut(s) 48, 100, 357, 524, 627
DpnI GATC 4 cut(s) 247, 903, 1095, 1129
DpnII GATC 4 cut(s) 245, 901, 1093, 1127
DraI TTTAAA 1 cut(s) 949
DraIII CACNNNGTG 1 cut(s) 755
EaeI YGGCCR 2 cut(s) 142, 564
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Ecl136II GAGCTC 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 3 cut(s) 58, 1231, 1269
Eco53kI GAGCTC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 1143
EcoICRI GAGCTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 751
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 7 cut(s) 13, 254, 293, 468, 929, 959, 1061
FaqI GGGAC 2 cut(s) 44, 281
FatI CATG 7 cut(s) 9, 250, 289, 464, 925, 955, 1057
FauI CCCGC 1 cut(s) 69
FokI GGATG 2 cut(s) 300, 1158
FriOI GRGCYC 1 cut(s) 226
FspBI CTAG 2 cut(s) 1158, 1178
GlaI GCGC 2 cut(s) 469, 791
HaeIII GGCC 4 cut(s) 144, 566, 579, 954
HapII CCGG 4 cut(s) 56, 341, 732, 1202
HhaI GCGC 2 cut(s) 470, 792
Hin1II CATG 7 cut(s) 13, 254, 293, 468, 929, 959, 1061
Hin6I GCGC 2 cut(s) 468, 790
HinP1I GCGC 2 cut(s) 468, 790
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 3 cut(s) 368, 625, 1133
HpaII CCGG 4 cut(s) 56, 341, 732, 1202
HphI GGTGA 4 cut(s) 179, 191, 218, 767
Hpy166II GTNNAC 3 cut(s) 182, 635, 1063
Hpy188III TCNNGA 3 cut(s) 102, 915, 1178
Hpy8I GTNNAC 3 cut(s) 182, 635, 1063
HpyAV CCTTC 4 cut(s) 309, 837, 1031, 1118
HpyCH4III ACNGT 2 cut(s) 436, 562
HpyCH4IV ACGT 1 cut(s) 835
HpyCH4V TGCA 5 cut(s) 94, 374, 574, 591, 967
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 613
HpyF3I CTNAG 5 cut(s) 48, 100, 357, 524, 627
HpySE526I ACGT 1 cut(s) 835
Hsp92II CATG 7 cut(s) 13, 254, 293, 468, 929, 959, 1061
HspAI GCGC 2 cut(s) 468, 790
Kzo9I GATC 4 cut(s) 245, 901, 1093, 1127
LmnI GCTCC 2 cut(s) 104, 221
LweI GCATC 1 cut(s) 383
MabI ACCWGGT 1 cut(s) 751
MaeI CTAG 2 cut(s) 1158, 1178
MaeII ACGT 1 cut(s) 835
MaeIII GTNAC 4 cut(s) 343, 436, 860, 881
MalI GATC 4 cut(s) 247, 903, 1095, 1129
MboI GATC 4 cut(s) 245, 901, 1093, 1127
MboII GAAGA 3 cut(s) 300, 659, 1053
MflI RGATCY 2 cut(s) 1093, 1127
MhlI GDGCHC 1 cut(s) 226
MlsI TGGCCA 2 cut(s) 144, 566
MluCI AATT 7 cut(s) 205, 472, 569, 697, 744, 846, 1100
MluNI TGGCCA 2 cut(s) 144, 566
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 4 cut(s) 345, 1051, 1139, 1258
Mox20I TGGCCA 2 cut(s) 144, 566
MroXI GAANNNNTTC 1 cut(s) 1137
MscI TGGCCA 2 cut(s) 144, 566
MseI TTAA 2 cut(s) 486, 948
MslI CAYNNNNRTG 1 cut(s) 498
Msp20I TGGCCA 2 cut(s) 144, 566
MspA1I CMGCKG 2 cut(s) 68, 219
MspI CCGG 4 cut(s) 56, 341, 732, 1202
MspR9I CCNGG 2 cut(s) 732, 753
MvaI CCWGG 1 cut(s) 753
MwoI GCNNNNNNNGC 2 cut(s) 467, 613
NciI CCSGG 1 cut(s) 732
NcoI CCATGG 1 cut(s) 9
NdeII GATC 4 cut(s) 245, 901, 1093, 1127
NlaIII CATG 7 cut(s) 13, 254, 293, 468, 929, 959, 1061
NlaIV GGNNCC 3 cut(s) 60, 521, 1270
NmuCI GTSAC 2 cut(s) 860, 881
NspI RCATGY 1 cut(s) 929
PcsI WCGNNNNNNNCGW 1 cut(s) 806
PdmI GAANNNNTTC 1 cut(s) 1137
PfeI GAWTC 2 cut(s) 368, 1133
PflMI CCANNNNNTGG 2 cut(s) 140, 758
Ple19I CGATCG 1 cut(s) 904
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
Psp124BI GAGCTC 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 751
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 3 cut(s) 60, 521, 1270
PspPI GGNCC 4 cut(s) 58, 577, 1231, 1269
PsrI GAACNNNNNNTAC 2 cut(s) 253, 285
PstNI CAGNNNCTG 1 cut(s) 1259
PsuI RGATCY 2 cut(s) 1093, 1127
PvuI CGATCG 1 cut(s) 904
RsaI GTAC 2 cut(s) 1064, 1162
RsaNI GTAC 2 cut(s) 1063, 1161
RseI CAYNNNNRTG 1 cut(s) 498
SacI GAGCTC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 486, 948
Sau3AI GATC 4 cut(s) 245, 901, 1093, 1127
Sau96I GGNCC 4 cut(s) 58, 577, 1231, 1269
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 2 cut(s) 732, 753
SduI GDGCHC 1 cut(s) 226
SexAI ACCWGGT 1 cut(s) 751
SfaNI GCATC 1 cut(s) 383
SfcI CTRYAG 1 cut(s) 214
SinI GGWCC 3 cut(s) 58, 1231, 1269
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 7 cut(s) 205, 472, 569, 697, 744, 846, 1100
SsiI CCGC 3 cut(s) 62, 68, 219
SspMI CTAG 2 cut(s) 1158, 1178
SstI GAGCTC 1 cut(s) 226
StyD4I CCNGG 2 cut(s) 730, 751
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 436, 562
TaiI ACGT 1 cut(s) 838
TaqI TCGA 4 cut(s) 40, 256, 822, 900
TasI AATT 7 cut(s) 205, 472, 569, 697, 744, 846, 1100
TfiI GAWTC 2 cut(s) 368, 1133
Tru1I TTAA 2 cut(s) 486, 948
Tru9I TTAA 2 cut(s) 486, 948
TscAI CASTG 4 cut(s) 114, 387, 567, 635
TseFI GTSAC 2 cut(s) 860, 881
Tsp45I GTSAC 2 cut(s) 860, 881
TspDTI ATGAA 5 cut(s) 226, 453, 660, 708, 972
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 4 cut(s) 114, 387, 567, 635
Van91I CCANNNNNTGG 2 cut(s) 140, 758
VpaK11BI GGWCC 3 cut(s) 58, 1231, 1269
XapI RAATTY 3 cut(s) 205, 697, 744
XbaI TCTAGA 1 cut(s) 1177
XceI RCATGY 1 cut(s) 929
XmnI GAANNNNTTC 1 cut(s) 1137
XspI CTAG 2 cut(s) 1158, 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.