Rh7BG204600

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016854
Physical Location & Seq
Reverse (-)
17091736 .. 17094510
2775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG204600.1

Sequence Viewer

Length: 1194 bp
ATGTCTCGTTTGGTGCAATACTCAGGGGCAGTGGGGTCTCAATGGAACACTCCACCAATGGTTGGCCAACCTCCTTATAGGGGTATCGGTGAAGTGGGTAGTGAACTATTCAGAGGACATCAAGGAAATTTTGGCTACAGCGGAGCTCACCCATCTTTCATTGGGGGATCACATGGTCGAGGTAGGGGTGGTTCTTGGCTTTTAGCAGAACATGGTGTCCCTTCAACATCTTCTCATCCTCCCCATCAGACATACCAATCTCCGGTAACGCTGACACCTCAGAAGTCGGAATCTGCATCAGCACTGAAAACGGAAGTTCCAAACTACCAAAAACCTCAAGTTGCTCAAAAAACCACGGTTACTTGGTGTGAAGTTTGTAATGCTTCATGCACTAATTTGGACGTTCTTAAACAGCACCAAAATGGAAAGCGACATCAAAGGAACCTGAGAAAAATGGAAAGGTTGAAAAATGGTATCAGAACAGTGGCCAAATTGCAGGGCCAACAGCTTTGCACTTCTAATACAAAGCTTGAAGTGCCTCATCAGACTCAGTGTGAACAAGACGATGAAGAGAAAAACACAACAAAGGATATACCATATGAACCTGTTGGCTATGAAAATTCAAGGGAAACTGGAAAACAAAATAAGAACCCCAGACAGCCTAAAATTCCACCAGGTGATGGGTCTGACAATGTGAAGCGTGGTAAGAAGCGCAAGAAAACGAAAACTTCCAAACGTAAAGTTGTAATTCCGATAGTTTGTGACTTGTGTAATGTCAAGTGTGAGAAGCAGGCTTTTTTCGATCAGCATCTTTCAGGAAAGAAGCATGTTGCCAAGTATAAACTATTTAGAGGCCATGAAGCTATGCATCGACCCGTGGGGCTTCAAGTTCTATACCCCCCTAATCCATTGGCTGAAACTATATTCCAACCCCAAGAAGGAAGATATATACCTCCCCATGTGTACCAAGATATACAGGTGGAAACAAGTTCAGATCCTCAATTTCAACAAAATCCAACCTCTGAAGGATCTGAATCCATTCTTGGATGTGGAAGCTCTAGTACCATTACAACAGCTCTAGAAACCAACATCACAACAGAACCGGAAATCAGCCAAGAAGCTACCATTGAGGTCCAACATTTGAATAGTATTTCAGAGACGGGTCAGGGGTCCAATACTTTTTCACAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

397

Amino Acids

43.97

Weight (kDa)

8.99

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 122 - 145 1.6e-07 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016854)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18930
prunus_persica Prupe.5G069800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203321
rosa_laevigata RLG00000003535
rosa_multiflora Rmu_sc0002286.1_g000001 Rmu_sc0003582.1_g000006
rosa_roxburghii Rroxscaffold_3G00253880
rosa_rugosa Rorug07G0075500 Rorug07G0075600
rosa_samantha Rh7AG205200 Rh7BG204600 Rh7CG216400 Rh7DG211700
rosa_wichuraiana Rw7G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 62, 680
AciI CCGC 1 cut(s) 141
AclWI GGATC 3 cut(s) 175, 989, 1036
AcoI YGGCCR 2 cut(s) 64, 486
AcsI RAATTY 3 cut(s) 127, 619, 666
AcuI CTGAAG 1 cut(s) 1044
AdeI CACNNNGTG 1 cut(s) 677
AfaI GTAC 2 cut(s) 965, 1063
AfiI CCNNNNNNNGG 5 cut(s) 62, 80, 262, 680, 938
AgsI TTSAA 7 cut(s) 225, 466, 533, 624, 887, 1007, 1144
AjnI CCWGG 1 cut(s) 673
AjuI GAANNNNNNNTTGG 2 cut(s) 1026, 1058
AloI GAACNNNNNNTCC 2 cut(s) 201, 233
AluBI AGCT 7 cut(s) 146, 508, 529, 863, 1056, 1076, 1121
AluI AGCT 7 cut(s) 146, 508, 529, 863, 1056, 1076, 1121
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 3 cut(s) 9, 42, 1151
AlwI GGATC 3 cut(s) 175, 989, 1036
AoxI GGCC 4 cut(s) 64, 486, 499, 853
ApoI RAATTY 3 cut(s) 127, 619, 666
Asp700I GAANNNNTTC 1 cut(s) 1038
AspLEI GCGC 1 cut(s) 714
AspS9I GGNCC 3 cut(s) 499, 1132, 1170
AsuHPI GGTGA 3 cut(s) 101, 140, 689
AvaII GGWCC 2 cut(s) 1132, 1170
BalI TGGCCA 2 cut(s) 66, 488
BanII GRGCYC 1 cut(s) 148
BarI GAAGNNNNNNTAC 2 cut(s) 1045, 1077
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 3 cut(s) 160, 252, 674
BciT130I CCWGG 1 cut(s) 675
BcoDI GTCTC 3 cut(s) 9, 42, 1151
BfaI CTAG 2 cut(s) 1059, 1079
BfmI CTRYAG 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 2 cut(s) 1132, 1170
BmgT120I GGNCC 3 cut(s) 499, 1132, 1170
BmiI GGNNCC 2 cut(s) 443, 1171
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 3 cut(s) 305, 817, 877
BpuEI CTTGAG 1 cut(s) 321
BsaBI GATNNNNATC 2 cut(s) 807, 1033
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 354, 876
BsaWI WCCGGW 2 cut(s) 262, 1102
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 80, 262, 680, 938
Bse1I ACTGG 1 cut(s) 637
Bse8I GATNNNNATC 2 cut(s) 807, 1033
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 2 cut(s) 354, 876
BseGI GGATG 2 cut(s) 235, 1052
BseJI GATNNNNATC 2 cut(s) 807, 1033
BseLI CCNNNNNNNGG 5 cut(s) 62, 80, 262, 680, 938
BseMII CTCAG 4 cut(s) 36, 293, 437, 563
BseNI ACTGG 1 cut(s) 637
BshFI GGCC 4 cut(s) 66, 488, 501, 855
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 2 cut(s) 263, 1103
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 5 cut(s) 62, 80, 262, 680, 938
BsmAI GTCTC 3 cut(s) 9, 42, 1151
BsmBI CGTCTC 1 cut(s) 1151
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 4 cut(s) 66, 488, 501, 855
Bso31I GGTCTC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 4 cut(s) 167, 802, 994, 1028
BspACI CCGC 1 cut(s) 141
BspANI GGCC 4 cut(s) 66, 488, 501, 855
BspCNI CTCAG 4 cut(s) 35, 292, 438, 562
BspLI GGNNCC 2 cut(s) 443, 1171
BspPI GGATC 3 cut(s) 175, 989, 1036
BspTNI GGTCTC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 2 cut(s) 354, 876
BssMI GATC 4 cut(s) 167, 802, 994, 1028
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 2 cut(s) 358, 484
Bst6I CTCTTC 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 792
BstDEI CTNAG 4 cut(s) 22, 279, 446, 549
BstDSI CCRYGG 2 cut(s) 354, 876
BstF5I GGATG 2 cut(s) 235, 1052
BstHHI GCGC 1 cut(s) 714
BstKTI GATC 4 cut(s) 170, 805, 997, 1031
BstMAI GTCTC 3 cut(s) 9, 42, 1151
BstMBI GATC 4 cut(s) 167, 802, 994, 1028
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 1 cut(s) 830
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 1 cut(s) 136
BstX2I RGATCY 2 cut(s) 994, 1028
BstYI RGATCY 2 cut(s) 994, 1028
BsuRI GGCC 4 cut(s) 66, 488, 501, 855
BtgI CCRYGG 2 cut(s) 354, 876
BtsCI GGATG 2 cut(s) 235, 1052
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 4 cut(s) 36, 302, 489, 557
Cac8I GCNNGC 1 cut(s) 792
CfoI GCGC 1 cut(s) 714
Cfr13I GGNCC 3 cut(s) 499, 1132, 1170
CsiI ACCWGGT 1 cut(s) 673
Csp6I GTAC 2 cut(s) 964, 1062
CviAII CATG 6 cut(s) 173, 212, 387, 827, 857, 959
CviQI GTAC 2 cut(s) 964, 1062
DdeI CTNAG 4 cut(s) 22, 279, 446, 549
DpnI GATC 4 cut(s) 169, 804, 996, 1030
DpnII GATC 4 cut(s) 167, 802, 994, 1028
DraIII CACNNNGTG 1 cut(s) 677
EaeI YGGCCR 2 cut(s) 64, 486
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Ecl136II GAGCTC 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 1132, 1170
Eco53kI GAGCTC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 1044
EcoICRI GAGCTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 673
EcoT22I ATGCAT 1 cut(s) 870
EcoT38I GRGCYC 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 1151
FaeI CATG 6 cut(s) 176, 215, 390, 830, 860, 962
FaqI GGGAC 1 cut(s) 203
FatI CATG 6 cut(s) 172, 211, 386, 826, 856, 958
FauNDI CATATG 1 cut(s) 598
FokI GGATG 2 cut(s) 222, 1059
FriOI GRGCYC 1 cut(s) 148
FspBI CTAG 2 cut(s) 1059, 1079
GlaI GCGC 1 cut(s) 713
HaeIII GGCC 4 cut(s) 66, 488, 501, 855
HapII CCGG 2 cut(s) 263, 1103
HhaI GCGC 1 cut(s) 714
Hin1II CATG 6 cut(s) 176, 215, 390, 830, 860, 962
Hin6I GCGC 1 cut(s) 712
HinP1I GCGC 1 cut(s) 712
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 3 cut(s) 290, 547, 1034
HpaII CCGG 2 cut(s) 263, 1103
HphI GGTGA 3 cut(s) 101, 140, 689
Hpy166II GTNNAC 3 cut(s) 104, 557, 964
Hpy188III TCNNGA 2 cut(s) 816, 1079
Hpy8I GTNNAC 3 cut(s) 104, 557, 964
HpyAV CCTTC 3 cut(s) 231, 932, 1019
HpyCH4III ACNGT 2 cut(s) 358, 484
HpyCH4IV ACGT 2 cut(s) 402, 736
HpyCH4V TGCA 6 cut(s) 16, 296, 390, 496, 513, 868
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 4 cut(s) 22, 279, 446, 549
HpySE526I ACGT 2 cut(s) 402, 736
Hsp92II CATG 6 cut(s) 176, 215, 390, 830, 860, 962
HspAI GCGC 1 cut(s) 712
Kzo9I GATC 4 cut(s) 167, 802, 994, 1028
LmnI GCTCC 1 cut(s) 143
LweI GCATC 3 cut(s) 305, 817, 877
MabI ACCWGGT 1 cut(s) 673
MaeI CTAG 2 cut(s) 1059, 1079
MaeII ACGT 2 cut(s) 402, 736
MaeIII GTNAC 3 cut(s) 265, 358, 761
MalI GATC 4 cut(s) 169, 804, 996, 1030
MboI GATC 4 cut(s) 167, 802, 994, 1028
MboII GAAGA 3 cut(s) 222, 581, 954
MflI RGATCY 2 cut(s) 994, 1028
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 2 cut(s) 66, 488
MluCI AATT 7 cut(s) 127, 394, 491, 619, 666, 747, 1001
MluNI TGGCCA 2 cut(s) 66, 488
MlyI GAGTC 1 cut(s) 541
MmeI TCCRAC 4 cut(s) 267, 952, 1040, 1159
Mox20I TGGCCA 2 cut(s) 66, 488
Mph1103I ATGCAT 1 cut(s) 870
MroXI GAANNNNTTC 1 cut(s) 1038
MscI TGGCCA 2 cut(s) 66, 488
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 1 cut(s) 420
Msp20I TGGCCA 2 cut(s) 66, 488
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 2 cut(s) 263, 1103
MspR9I CCNGG 1 cut(s) 675
MvaI CCWGG 1 cut(s) 675
MwoI GCNNNNNNNGC 1 cut(s) 535
NdeI CATATG 1 cut(s) 598
NdeII GATC 4 cut(s) 167, 802, 994, 1028
NlaIII CATG 6 cut(s) 176, 215, 390, 830, 860, 962
NlaIV GGNNCC 2 cut(s) 443, 1171
NmuCI GTSAC 1 cut(s) 761
NsiI ATGCAT 1 cut(s) 870
NspI RCATGY 1 cut(s) 830
PdmI GAANNNNTTC 1 cut(s) 1038
PfeI GAWTC 2 cut(s) 290, 1034
PflMI CCANNNNNTGG 2 cut(s) 62, 680
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
Psp124BI GAGCTC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 673
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 2 cut(s) 443, 1171
PspPI GGNCC 3 cut(s) 499, 1132, 1170
PsrI GAACNNNNNNTAC 2 cut(s) 175, 207
PsuI RGATCY 2 cut(s) 994, 1028
RsaI GTAC 2 cut(s) 965, 1063
RsaNI GTAC 2 cut(s) 964, 1062
RseI CAYNNNNRTG 1 cut(s) 420
SacI GAGCTC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 408
Sau3AI GATC 4 cut(s) 167, 802, 994, 1028
Sau96I GGNCC 3 cut(s) 499, 1132, 1170
SchI GAGTC 1 cut(s) 541
ScrFI CCNGG 1 cut(s) 675
SduI GDGCHC 1 cut(s) 148
SexAI ACCWGGT 1 cut(s) 673
SfaNI GCATC 3 cut(s) 305, 817, 877
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 2 cut(s) 1132, 1170
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
Sse9I AATT 7 cut(s) 127, 394, 491, 619, 666, 747, 1001
SsiI CCGC 1 cut(s) 141
SspMI CTAG 2 cut(s) 1059, 1079
SstI GAGCTC 1 cut(s) 148
StyD4I CCNGG 1 cut(s) 673
TaaI ACNGT 2 cut(s) 358, 484
TaiI ACGT 2 cut(s) 405, 739
TaqI TCGA 3 cut(s) 178, 801, 871
TasI AATT 7 cut(s) 127, 394, 491, 619, 666, 747, 1001
TfiI GAWTC 2 cut(s) 290, 1034
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 4 cut(s) 36, 309, 489, 557
TseFI GTSAC 1 cut(s) 761
Tsp45I GTSAC 1 cut(s) 761
TspDTI ATGAA 6 cut(s) 148, 375, 582, 615, 630, 873
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 4 cut(s) 36, 309, 489, 557
Van91I CCANNNNNTGG 2 cut(s) 62, 680
VpaK11BI GGWCC 2 cut(s) 1132, 1170
XapI RAATTY 3 cut(s) 127, 619, 666
XbaI TCTAGA 1 cut(s) 1078
XceI RCATGY 1 cut(s) 830
XmnI GAANNNNTTC 1 cut(s) 1038
XspI CTAG 2 cut(s) 1059, 1079
Zsp2I ATGCAT 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.