RLG00000003535

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016854
Physical Location & Seq
Forward (+)
49770581 .. 49775084
4504 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003535

Sequence Viewer

Length: 1374 bp
ATGGTTGGCCAACCTCCATATAGGGGTATCGGTGAAGTGGGTGGTGAACTATTCAGAGGACATCAAGGAAATTTTGGCTACAGCGGAGCTCACCCATCTTTCATTGGGGGATCACATGGTCGAGGTAGGGGTGGTTCTTGGCTTTTAGTGGAGCATGGTGTCCCTTCAACATCTTCTCATCCTCCCCATCAGACATACCAATCTCCGGTAACGCTGACACCTCAGAAGTCGGAATCTGCATCAGCACTGAAAACGGAAGTTCCAAACTACCAAAAACCTCAAGTTGCTCAAAAAACCACGGTTACTTGGTGTGAAGTTTGTAATGCTTCATGCGCTAATTTGGACGTTCTTAAACAGCACCAAAATGGAAAGCGACATCAAAGGAACCTGAGAAAAATGGAAAGGTTGAAAAATGGTATCAGAACAGTGGCCAAATTGCAGGGCCAACAGCTTTGCACTTCTAATACAAAGCTTGAAGTGCCTCATCAGACTCAGTGTGAACAAGATGATGAAGAGAAAAACACAACAAAGGATATACCATATGAACCTGTTGGCTATGAAAATTCAAGGGAAACTGGAAAACAAAATAAGAACCCCGGACAGCCTGAAATTCCACCAGGTGATGGGTCTGACAATGTGAAGCGTGGTAAGAAGCGCAAGAAAACGAAAACTCCGAAGCAGTCAGTCGAACCTTCCAAACGTAAAGTCGTAATTCCGATAGTTTGTGACTTGTGTAATGTCAAGTGTGACAAGCAGGCTTTTTTCGATCGCCATCTTTCAGGAAAGAAGCATGTTGCCAAGTATAAACGATTTAAAGGCCATGAAGCTATGCATCGACCCGTGGGGCTTCAAGTTCTATACCCCCCTAACCCATTGGCTGAAACTATATTCCAACCCCAAGAAGGAAGATATATACCTCCCCATGTGTACCAAGATGTACAGGTGGAAACAAGTTCAGATCCCCAATTTCAACAAAATCCAACCTCTGAAGGATCTGAATCCATTCTTGGATGTGGAAGCTCTAGTACCATTACAACAGCTCTAGAAACCAACATCACAACAGAACCGGAAATCAGCCAAGAAGCTACCAATGAGAGCTCAAAGATGGGAAGATATGAAAAGAGGGGGCATGTTACTATGTTAATATCTGAAGATGTAAATGGTGAAGCCACAAAGTCAAAAGTCATCTGTTTCCAATCTTTTCATCCTTATGGTTCCAAAGCAATTTATCTTTCCAACACAAATTGGAAAAGATTCTCTCTCTTGGATATTAATCAGAAGGCTAAGTGTGCCTGCTTAAAGACACACTACTACAATCTATACAAGAGAGGGCAAACAATTCAGGAAAGCTCATTGCTTCTTCATTTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

458

Amino Acids

51.07

Weight (kDa)

9.22

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 103 - 126 5.5e-07 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016854)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18930
prunus_persica Prupe.5G069800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203321
rosa_laevigata RLG00000003535
rosa_multiflora Rmu_sc0002286.1_g000001 Rmu_sc0003582.1_g000006
rosa_roxburghii Rroxscaffold_3G00253880
rosa_rugosa Rorug07G0075500 Rorug07G0075600
rosa_samantha Rh7AG205200 Rh7BG204600 Rh7CG216400 Rh7DG211700
rosa_wichuraiana Rw7G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 623
AciI CCGC 1 cut(s) 84
AclWI GGATC 3 cut(s) 118, 953, 1000
AcoI YGGCCR 2 cut(s) 7, 429
AcsI RAATTY 3 cut(s) 70, 562, 609
AcuI CTGAAG 2 cut(s) 1008, 1170
AdeI CACNNNGTG 1 cut(s) 620
AfaI GTAC 3 cut(s) 929, 939, 1027
AfiI CCNNNNNNNGG 4 cut(s) 23, 205, 623, 902
AgsI TTSAA 6 cut(s) 168, 409, 476, 567, 851, 971
AjnI CCWGG 1 cut(s) 616
AjuI GAANNNNNNNTTGG 2 cut(s) 990, 1022
AluBI AGCT 9 cut(s) 89, 451, 472, 827, 1020, 1040, 1085, 1098, 1350
AluI AGCT 9 cut(s) 89, 451, 472, 827, 1020, 1040, 1085, 1098, 1350
Alw21I GWGCWC 2 cut(s) 91, 1100
AlwI GGATC 3 cut(s) 118, 953, 1000
AoxI GGCC 4 cut(s) 7, 429, 442, 817
ApoI RAATTY 3 cut(s) 70, 562, 609
ArsI GACNNNNNNTTYG 2 cut(s) 690, 722
AseI ATTAAT 1 cut(s) 1272
Asp700I GAANNNNTTC 2 cut(s) 1002, 1253
AspLEI GCGC 2 cut(s) 335, 657
AspS9I GGNCC 1 cut(s) 442
AsuC2I CCSGG 1 cut(s) 597
AsuHPI GGTGA 5 cut(s) 44, 56, 83, 632, 1175
BalI TGGCCA 2 cut(s) 9, 431
BanII GRGCYC 2 cut(s) 91, 1100
BarI GAAGNNNNNNTAC 2 cut(s) 1009, 1041
Bbv12I GWGCWC 2 cut(s) 91, 1100
BccI CCATC 5 cut(s) 103, 195, 617, 780, 1099
BciT130I CCWGG 1 cut(s) 618
BcnI CCSGG 1 cut(s) 597
BfaI CTAG 2 cut(s) 1023, 1043
BfmI CTRYAG 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 597, 618
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 2 cut(s) 386, 1216
BmrFI CCNGG 2 cut(s) 597, 618
BmsI GCATC 2 cut(s) 248, 841
BpuEI CTTGAG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 597
BsaBI GATNNNNATC 3 cut(s) 771, 997, 1272
BsaJI CCNNGG 3 cut(s) 297, 595, 840
BsaWI WCCGGW 2 cut(s) 205, 1066
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 205, 623, 902
Bse1I ACTGG 1 cut(s) 580
Bse3DI GCAATG 1 cut(s) 1352
Bse8I GATNNNNATC 3 cut(s) 771, 997, 1272
BseBI CCWGG 1 cut(s) 618
BseDI CCNNGG 3 cut(s) 297, 595, 840
BseGI GGATG 3 cut(s) 178, 1016, 1204
BseJI GATNNNNATC 3 cut(s) 771, 997, 1272
BseLI CCNNNNNNNGG 4 cut(s) 23, 205, 623, 902
BseMI GCAATG 1 cut(s) 1352
BseMII CTCAG 3 cut(s) 236, 380, 506
BseNI ACTGG 1 cut(s) 580
Bsh1285I CGRYCG 1 cut(s) 769
BshFI GGCC 4 cut(s) 9, 431, 444, 819
BsiEI CGRYCG 1 cut(s) 769
BsiHKAI GWGCWC 2 cut(s) 91, 1100
BsiSI CCGG 3 cut(s) 206, 597, 1067
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 4 cut(s) 23, 205, 623, 902
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 4 cut(s) 9, 431, 444, 819
Bsp1286I GDGCHC 2 cut(s) 91, 1100
Bsp1407I TGTACA 1 cut(s) 937
Bsp143I GATC 4 cut(s) 110, 766, 958, 992
BspACI CCGC 1 cut(s) 84
BspANI GGCC 4 cut(s) 9, 431, 444, 819
BspCNI CTCAG 3 cut(s) 235, 381, 505
BspLI GGNNCC 2 cut(s) 386, 1216
BspPI GGATC 3 cut(s) 118, 953, 1000
BsrDI GCAATG 1 cut(s) 1352
BsrGI TGTACA 1 cut(s) 937
BsrI ACTGG 1 cut(s) 580
BssECI CCNNGG 3 cut(s) 297, 595, 840
BssMI GATC 4 cut(s) 110, 766, 958, 992
Bst2UI CCWGG 1 cut(s) 618
Bst4CI ACNGT 2 cut(s) 301, 427
Bst6I CTCTTC 1 cut(s) 507
BstAUI TGTACA 1 cut(s) 937
BstC8I GCNNGC 2 cut(s) 756, 1294
BstDEI CTNAG 4 cut(s) 222, 389, 492, 1284
BstDSI CCRYGG 2 cut(s) 297, 840
BstF5I GGATG 3 cut(s) 178, 1016, 1204
BstHHI GCGC 2 cut(s) 335, 657
BstKTI GATC 4 cut(s) 113, 769, 961, 995
BstMBI GATC 4 cut(s) 110, 766, 958, 992
BstMCI CGRYCG 1 cut(s) 769
BstMWI GCNNNNNNNGC 3 cut(s) 332, 478, 1289
BstNI CCWGG 1 cut(s) 618
BstNSI RCATGY 2 cut(s) 794, 1133
BstSCI CCNGG 2 cut(s) 595, 616
BstSFI CTRYAG 1 cut(s) 79
BstX2I RGATCY 2 cut(s) 958, 992
BstYI RGATCY 2 cut(s) 958, 992
BsuRI GGCC 4 cut(s) 9, 431, 444, 819
BtgI CCRYGG 2 cut(s) 297, 840
BtsCI GGATG 3 cut(s) 178, 1016, 1204
BtsIMutI CAGTG 3 cut(s) 245, 432, 500
Cac8I GCNNGC 2 cut(s) 756, 1294
CfoI GCGC 2 cut(s) 335, 657
Cfr13I GGNCC 1 cut(s) 442
CsiI ACCWGGT 1 cut(s) 616
Csp6I GTAC 3 cut(s) 928, 938, 1026
CviAII CATG 7 cut(s) 116, 155, 330, 791, 821, 923, 1130
CviQI GTAC 3 cut(s) 928, 938, 1026
DdeI CTNAG 4 cut(s) 222, 389, 492, 1284
DpnI GATC 4 cut(s) 112, 768, 960, 994
DpnII GATC 4 cut(s) 110, 766, 958, 992
DraI TTTAAA 1 cut(s) 814
DraIII CACNNNGTG 1 cut(s) 620
EaeI YGGCCR 2 cut(s) 7, 429
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Ecl136II GAGCTC 2 cut(s) 89, 1098
Eco24I GRGCYC 2 cut(s) 91, 1100
Eco53kI GAGCTC 2 cut(s) 89, 1098
Eco57I CTGAAG 2 cut(s) 1008, 1170
EcoICRI GAGCTC 2 cut(s) 89, 1098
EcoRII CCWGG 1 cut(s) 616
EcoT22I ATGCAT 1 cut(s) 834
EcoT38I GRGCYC 2 cut(s) 91, 1100
FaeI CATG 7 cut(s) 119, 158, 333, 794, 824, 926, 1133
FaqI GGGAC 1 cut(s) 146
FatI CATG 7 cut(s) 115, 154, 329, 790, 820, 922, 1129
FauNDI CATATG 1 cut(s) 541
FokI GGATG 3 cut(s) 165, 1023, 1191
FriOI GRGCYC 2 cut(s) 91, 1100
FspBI CTAG 2 cut(s) 1023, 1043
GlaI GCGC 2 cut(s) 334, 656
HaeIII GGCC 4 cut(s) 9, 431, 444, 819
HapII CCGG 3 cut(s) 206, 597, 1067
HhaI GCGC 2 cut(s) 335, 657
Hin1II CATG 7 cut(s) 119, 158, 333, 794, 824, 926, 1133
Hin6I GCGC 2 cut(s) 333, 655
HinP1I GCGC 2 cut(s) 333, 655
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 4 cut(s) 233, 490, 998, 1254
HpaII CCGG 3 cut(s) 206, 597, 1067
HphI GGTGA 5 cut(s) 44, 56, 83, 632, 1175
Hpy166II GTNNAC 3 cut(s) 47, 500, 928
Hpy188III TCNNGA 3 cut(s) 780, 1043, 1343
Hpy8I GTNNAC 3 cut(s) 47, 500, 928
HpyAV CCTTC 5 cut(s) 174, 702, 896, 983, 1273
HpyCH4III ACNGT 2 cut(s) 301, 427
HpyCH4IV ACGT 2 cut(s) 345, 700
HpyCH4V TGCA 4 cut(s) 239, 439, 456, 832
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 478, 1289
HpyF3I CTNAG 4 cut(s) 222, 389, 492, 1284
HpySE526I ACGT 2 cut(s) 345, 700
Hsp92II CATG 7 cut(s) 119, 158, 333, 794, 824, 926, 1133
HspAI GCGC 2 cut(s) 333, 655
Kzo9I GATC 4 cut(s) 110, 766, 958, 992
LmnI GCTCC 2 cut(s) 86, 151
LweI GCATC 2 cut(s) 248, 841
MabI ACCWGGT 1 cut(s) 616
MaeI CTAG 2 cut(s) 1023, 1043
MaeII ACGT 2 cut(s) 345, 700
MaeIII GTNAC 5 cut(s) 208, 301, 725, 746, 1132
MalI GATC 4 cut(s) 112, 768, 960, 994
MboI GATC 4 cut(s) 110, 766, 958, 992
MboII GAAGA 6 cut(s) 165, 524, 918, 1122, 1163, 1352
MflI RGATCY 2 cut(s) 958, 992
MhlI GDGCHC 2 cut(s) 91, 1100
MlsI TGGCCA 2 cut(s) 9, 431
MluNI TGGCCA 2 cut(s) 9, 431
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 4 cut(s) 210, 916, 1004, 1260
Mox20I TGGCCA 2 cut(s) 9, 431
Mph1103I ATGCAT 1 cut(s) 834
MroXI GAANNNNTTC 2 cut(s) 1002, 1253
MscI TGGCCA 2 cut(s) 9, 431
MseI TTAA 5 cut(s) 351, 813, 1142, 1272, 1298
MslI CAYNNNNRTG 2 cut(s) 363, 1209
Msp20I TGGCCA 2 cut(s) 9, 431
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 3 cut(s) 206, 597, 1067
MspR9I CCNGG 2 cut(s) 597, 618
MvaI CCWGG 1 cut(s) 618
MwoI GCNNNNNNNGC 3 cut(s) 332, 478, 1289
NciI CCSGG 1 cut(s) 597
NdeI CATATG 1 cut(s) 541
NdeII GATC 4 cut(s) 110, 766, 958, 992
NlaIII CATG 7 cut(s) 119, 158, 333, 794, 824, 926, 1133
NlaIV GGNNCC 2 cut(s) 386, 1216
NmuCI GTSAC 2 cut(s) 725, 746
NsiI ATGCAT 1 cut(s) 834
NspI RCATGY 2 cut(s) 794, 1133
PcsI WCGNNNNNNNCGW 1 cut(s) 671
PdmI GAANNNNTTC 2 cut(s) 1002, 1253
PfeI GAWTC 3 cut(s) 233, 998, 1254
PflMI CCANNNNNTGG 1 cut(s) 623
Ple19I CGATCG 1 cut(s) 769
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PshBI ATTAAT 1 cut(s) 1272
Psp124BI GAGCTC 2 cut(s) 91, 1100
Psp6I CCWGG 1 cut(s) 616
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 2 cut(s) 386, 1216
PspPI GGNCC 1 cut(s) 442
PsrI GAACNNNNNNTAC 2 cut(s) 118, 150
PsuI RGATCY 2 cut(s) 958, 992
PvuI CGATCG 1 cut(s) 769
RsaI GTAC 3 cut(s) 929, 939, 1027
RsaNI GTAC 3 cut(s) 928, 938, 1026
RseI CAYNNNNRTG 2 cut(s) 363, 1209
SacI GAGCTC 2 cut(s) 91, 1100
SaqAI TTAA 5 cut(s) 351, 813, 1142, 1272, 1298
Sau3AI GATC 4 cut(s) 110, 766, 958, 992
Sau96I GGNCC 1 cut(s) 442
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 2 cut(s) 597, 618
SduI GDGCHC 2 cut(s) 91, 1100
SexAI ACCWGGT 1 cut(s) 616
SfaNI GCATC 2 cut(s) 248, 841
SfcI CTRYAG 1 cut(s) 79
SmiMI CAYNNNNRTG 2 cut(s) 363, 1209
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
SsiI CCGC 1 cut(s) 84
SspMI CTAG 2 cut(s) 1023, 1043
SstI GAGCTC 2 cut(s) 91, 1100
StyD4I CCNGG 2 cut(s) 595, 616
TaaI ACNGT 2 cut(s) 301, 427
TaiI ACGT 2 cut(s) 348, 703
TaqI TCGA 4 cut(s) 121, 687, 765, 835
TatI WGTACW 1 cut(s) 937
TfiI GAWTC 3 cut(s) 233, 998, 1254
Tru1I TTAA 5 cut(s) 351, 813, 1142, 1272, 1298
Tru9I TTAA 5 cut(s) 351, 813, 1142, 1272, 1298
TscAI CASTG 3 cut(s) 252, 432, 500
TseFI GTSAC 2 cut(s) 725, 746
Tsp45I GTSAC 2 cut(s) 725, 746
TspDTI ATGAA 9 cut(s) 91, 318, 525, 558, 573, 837, 1131, 1193, 1352
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 3 cut(s) 252, 432, 500
Van91I CCANNNNNTGG 1 cut(s) 623
VspI ATTAAT 1 cut(s) 1272
XapI RAATTY 3 cut(s) 70, 562, 609
XbaI TCTAGA 1 cut(s) 1042
XceI RCATGY 2 cut(s) 794, 1133
XmnI GAANNNNTTC 2 cut(s) 1002, 1253
XspI CTAG 2 cut(s) 1023, 1043
Zsp2I ATGCAT 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.