Rmu_sc0002286.1_g000001

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002286.1
OG0016854
Physical Location & Seq
Forward (+)
1 .. 5276
5276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002286.1_g000001.1.cds

Sequence Viewer

Length: 1098 bp
gttggccaacctccatataggggtatcggtgaagtgggtggtgaactattcagaggacatcaaggaaattttggctacagcggagctcacccatctttcattgggggatcacatggtcgaggtaggggtggttcttggcttttagtggaacatggtgtcccttcaacatcttctcatcctccccatcagacataccaatctccggtaacgctgacacctcagaagtcggaatctgcatcagcactgaaaacggaagttccaaactaccaaaaacctcaagttgctcaaaaaaccacggttacttggtgtgaagtttgtaatgcttcatgcgctaatttggacgttcttaaacagcaccaaaatggaaagcgacatcaaaggaacctgagaaaaatggaaaggttgaaaaacggtatcagaacagtggccaaattgcagggccaacagctttgcacttctaatacaaagcttgaagtgcctcatcagactcagtgtgaacaagacgatgaagagaaaaacacaacaaaggatataccatacgaacctgttggctatgaaaattcaagggaaactggaaaacaaaataagaaccccggacagcctgaaattccaccaggcgatgggtctgacaatgtgaagcgtggtaagaagcgcaagaaaacgaaaacgccgaagcagtcagtcaaaccttccaaacgtaaagtcgtaattccgatatttttgggtggtgatctgtttaagatttgtggtgacataccggtgctgaggtacgatcttacagatccggcaggagaggatgtagatggttggatcacgagggaagatgatggctacgggggtttggatcagcacaactttcttctttttttttatcagcacggtggtttgggtcttctctgtggtggcgatgtcgtcttgcgcagtaggtggcttttaaccggtgagtctgattctgttgctgtcggcagccttagtctgtctaggtccatcggtggagcagatagcagaggtttctcttctttggagctgcgacatcggtgggctggaaagctgctttcgagtcggcggtggacatggtggatgagccacatgcactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

365

Amino Acids

40.4

Weight (kDa)

9.33

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016854)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18930
prunus_persica Prupe.5G069800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203321
rosa_laevigata RLG00000003535
rosa_multiflora Rmu_sc0002286.1_g000001 Rmu_sc0003582.1_g000006
rosa_roxburghii Rroxscaffold_3G00253880
rosa_rugosa Rorug07G0075500 Rorug07G0075600
rosa_samantha Rh7AG205200 Rh7BG204600 Rh7CG216400 Rh7DG211700
rosa_wichuraiana Rw7G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 920
AccB7I CCANNNNNTGG 1 cut(s) 620
AciI CCGC 2 cut(s) 81, 1066
AclWI GGATC 4 cut(s) 115, 776, 818, 852
AcoI YGGCCR 2 cut(s) 4, 426
AcsI RAATTY 3 cut(s) 67, 559, 606
AfaI GTAC 1 cut(s) 770
AfiI CCNNNNNNNGG 3 cut(s) 20, 202, 620
AgeI ACCGGT 2 cut(s) 757, 938
AgsI TTSAA 4 cut(s) 165, 406, 473, 564
AjnI CCWGG 1 cut(s) 613
AloI GAACNNNNNNTCC 2 cut(s) 141, 173
AluBI AGCT 5 cut(s) 86, 448, 469, 1027, 1051
AluI AGCT 5 cut(s) 86, 448, 469, 1027, 1051
Alw21I GWGCWC 1 cut(s) 88
AlwI GGATC 4 cut(s) 115, 776, 818, 852
AoxI GGCC 3 cut(s) 4, 426, 439
ApeKI GCWGC 3 cut(s) 966, 1027, 1051
ApoI RAATTY 3 cut(s) 67, 559, 606
ArsI GACNNNNNNTTYG 2 cut(s) 687, 719
AsiGI ACCGGT 2 cut(s) 757, 938
AspLEI GCGC 3 cut(s) 332, 654, 921
AspS9I GGNCC 2 cut(s) 439, 984
AsuC2I CCSGG 1 cut(s) 594
AsuHPI GGTGA 6 cut(s) 41, 53, 80, 740, 761, 953
AvaII GGWCC 1 cut(s) 984
BalI TGGCCA 2 cut(s) 6, 428
BanII GRGCYC 1 cut(s) 88
BauI CACGAG 1 cut(s) 814
BbsI GAAGAC 1 cut(s) 884
Bbv12I GWGCWC 1 cut(s) 88
BbvCI CCTCAGC 1 cut(s) 764
BbvI GCAGC 3 cut(s) 978, 1014, 1038
BccI CCATC 6 cut(s) 100, 192, 614, 797, 821, 995
BciT130I CCWGG 1 cut(s) 615
BcnI CCSGG 1 cut(s) 594
BfaI CTAG 1 cut(s) 981
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 3 cut(s) 967, 1028, 1052
BlsI GCNGC 3 cut(s) 968, 1029, 1053
Bme1390I CCNGG 2 cut(s) 594, 615
Bme18I GGWCC 1 cut(s) 984
BmgT120I GGNCC 2 cut(s) 439, 984
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 2 cut(s) 594, 615
BmsI GCATC 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 884
Bpu10I CCTNAGC 1 cut(s) 764
BpuEI CTTGAG 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 594
BsaJI CCNNGG 2 cut(s) 294, 592
BsaWI WCCGGW 3 cut(s) 202, 757, 938
BsaXI ACNNNNNCTCC 2 cut(s) 783, 813
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 202, 620
Bse118I RCCGGY 2 cut(s) 757, 938
Bse1I ACTGG 1 cut(s) 577
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 2 cut(s) 294, 592
BseGI GGATG 3 cut(s) 175, 802, 1086
BseLI CCNNNNNNNGG 3 cut(s) 20, 202, 620
BseMII CTCAG 4 cut(s) 233, 377, 503, 755
BseNI ACTGG 1 cut(s) 577
BseXI GCAGC 3 cut(s) 978, 1014, 1038
BshFI GGCC 3 cut(s) 6, 428, 441
BshTI ACCGGT 2 cut(s) 757, 938
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 5 cut(s) 203, 594, 758, 785, 939
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 3 cut(s) 20, 202, 620
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 3 cut(s) 6, 428, 441
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 6 cut(s) 107, 730, 772, 781, 810, 844
BspACI CCGC 2 cut(s) 81, 1066
BspANI GGCC 3 cut(s) 6, 428, 441
BspCNI CTCAG 4 cut(s) 232, 378, 502, 756
BspLI GGNNCC 1 cut(s) 383
BspPI GGATC 4 cut(s) 115, 776, 818, 852
BsrFI RCCGGY 2 cut(s) 757, 938
BsrI ACTGG 1 cut(s) 577
BssAI RCCGGY 2 cut(s) 757, 938
BssECI CCNNGG 2 cut(s) 294, 592
BssMI GATC 6 cut(s) 107, 730, 772, 781, 810, 844
BssSI CACGAG 1 cut(s) 814
Bst2BI CACGAG 1 cut(s) 814
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 4 cut(s) 298, 413, 424, 881
Bst6I CTCTTC 2 cut(s) 504, 1021
BstDEI CTNAG 5 cut(s) 219, 386, 489, 764, 971
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 3 cut(s) 175, 802, 1086
BstHHI GCGC 3 cut(s) 332, 654, 921
BstKTI GATC 6 cut(s) 110, 733, 775, 784, 813, 847
BstMBI GATC 6 cut(s) 107, 730, 772, 781, 810, 844
BstMWI GCNNNNNNNGC 2 cut(s) 329, 475
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 1 cut(s) 1093
BstSCI CCNGG 2 cut(s) 592, 613
BstSFI CTRYAG 1 cut(s) 76
BstV1I GCAGC 3 cut(s) 978, 1014, 1038
BstV2I GAAGAC 1 cut(s) 884
BstX2I RGATCY 1 cut(s) 781
BstYI RGATCY 1 cut(s) 781
BsuRI GGCC 3 cut(s) 6, 428, 441
BtgI CCRYGG 1 cut(s) 294
BtgZI GCGATG 2 cut(s) 633, 921
BtsCI GGATG 3 cut(s) 175, 802, 1086
BtsIMutI CAGTG 4 cut(s) 242, 429, 497, 1093
CfoI GCGC 3 cut(s) 332, 654, 921
Cfr10I RCCGGY 2 cut(s) 757, 938
Cfr13I GGNCC 2 cut(s) 439, 984
Csp6I GTAC 1 cut(s) 769
CspAI ACCGGT 2 cut(s) 757, 938
CviAII CATG 5 cut(s) 113, 152, 327, 1074, 1090
CviQI GTAC 1 cut(s) 769
DdeI CTNAG 5 cut(s) 219, 386, 489, 764, 971
DpnI GATC 6 cut(s) 109, 732, 774, 783, 812, 846
DpnII GATC 6 cut(s) 107, 730, 772, 781, 810, 844
EaeI YGGCCR 2 cut(s) 4, 426
Eam1104I CTCTTC 2 cut(s) 504, 1021
EarI CTCTTC 2 cut(s) 504, 1021
Ecl136II GAGCTC 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 984
Eco53kI GAGCTC 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 613
EcoT38I GRGCYC 1 cut(s) 88
FaeI CATG 5 cut(s) 116, 155, 330, 1077, 1093
FaqI GGGAC 1 cut(s) 143
FatI CATG 5 cut(s) 112, 151, 326, 1073, 1089
Fnu4HI GCNGC 3 cut(s) 967, 1028, 1052
FokI GGATG 3 cut(s) 162, 809, 1093
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 3 cut(s) 967, 1028, 1052
FspBI CTAG 1 cut(s) 981
FspI TGCGCA 1 cut(s) 920
GlaI GCGC 3 cut(s) 331, 653, 920
GluI GCNGC 3 cut(s) 967, 1028, 1052
HaeIII GGCC 3 cut(s) 6, 428, 441
HapII CCGG 5 cut(s) 203, 594, 758, 785, 939
HhaI GCGC 3 cut(s) 332, 654, 921
Hin1II CATG 5 cut(s) 116, 155, 330, 1077, 1093
Hin6I GCGC 3 cut(s) 330, 652, 919
HinP1I GCGC 3 cut(s) 330, 652, 919
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 5 cut(s) 230, 487, 944, 950, 1060
HpaII CCGG 5 cut(s) 203, 594, 758, 785, 939
HphI GGTGA 6 cut(s) 41, 53, 80, 740, 761, 953
Hpy166II GTNNAC 3 cut(s) 44, 497, 1071
Hpy188I TCNGA 9 cut(s) 53, 189, 222, 229, 419, 486, 628, 714, 949
Hpy188III TCNNGA 1 cut(s) 814
Hpy8I GTNNAC 3 cut(s) 44, 497, 1071
HpyAV CCTTC 2 cut(s) 171, 699
HpyCH4III ACNGT 4 cut(s) 298, 413, 424, 881
HpyCH4IV ACGT 2 cut(s) 342, 697
HpyCH4V TGCA 4 cut(s) 236, 436, 453, 1093
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 475
HpyF3I CTNAG 5 cut(s) 219, 386, 489, 764, 971
HpySE526I ACGT 2 cut(s) 342, 697
Hsp92II CATG 5 cut(s) 116, 155, 330, 1077, 1093
HspAI GCGC 3 cut(s) 330, 652, 919
Kzo9I GATC 6 cut(s) 107, 730, 772, 781, 810, 844
LmnI GCTCC 3 cut(s) 83, 995, 1024
Lsp1109I GCAGC 3 cut(s) 978, 1014, 1038
LweI GCATC 1 cut(s) 245
MaeI CTAG 1 cut(s) 981
MaeII ACGT 2 cut(s) 342, 697
MaeIII GTNAC 3 cut(s) 205, 298, 749
MalI GATC 6 cut(s) 109, 732, 774, 783, 812, 846
MboI GATC 6 cut(s) 107, 730, 772, 781, 810, 844
MboII GAAGA 6 cut(s) 162, 521, 833, 851, 884, 1008
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 1 cut(s) 88
MlsI TGGCCA 2 cut(s) 6, 428
MluCI AATT 6 cut(s) 67, 334, 431, 559, 606, 708
MluNI TGGCCA 2 cut(s) 6, 428
MlyI GAGTC 3 cut(s) 481, 953, 1069
MmeI TCCRAC 2 cut(s) 207, 788
Mox20I TGGCCA 2 cut(s) 6, 428
MscI TGGCCA 2 cut(s) 6, 428
MseI TTAA 3 cut(s) 348, 738, 935
MslI CAYNNNNRTG 2 cut(s) 360, 758
Msp20I TGGCCA 2 cut(s) 6, 428
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 5 cut(s) 203, 594, 758, 785, 939
MspR9I CCNGG 2 cut(s) 594, 615
MvaI CCWGG 1 cut(s) 615
MwoI GCNNNNNNNGC 2 cut(s) 329, 475
NciI CCSGG 1 cut(s) 594
NdeII GATC 6 cut(s) 107, 730, 772, 781, 810, 844
NlaIII CATG 5 cut(s) 116, 155, 330, 1077, 1093
NlaIV GGNNCC 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 749
NsbI TGCGCA 1 cut(s) 920
NspI RCATGY 1 cut(s) 1093
PcsI WCGNNNNNNNCGW 1 cut(s) 668
PfeI GAWTC 2 cut(s) 230, 950
PflMI CCANNNNNTGG 1 cut(s) 620
PinAI ACCGGT 2 cut(s) 757, 938
PkrI GCNGC 3 cut(s) 968, 1029, 1053
PleI GAGTC 3 cut(s) 481, 952, 1068
PpsI GAGTC 3 cut(s) 481, 952, 1068
Psp124BI GAGCTC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 1 cut(s) 383
PspPI GGNCC 2 cut(s) 439, 984
PsrI GAACNNNNNNTAC 2 cut(s) 115, 147
PsuI RGATCY 1 cut(s) 781
RsaI GTAC 1 cut(s) 770
RsaNI GTAC 1 cut(s) 769
RseI CAYNNNNRTG 2 cut(s) 360, 758
SacI GAGCTC 1 cut(s) 88
SaqAI TTAA 3 cut(s) 348, 738, 935
SatI GCNGC 3 cut(s) 967, 1028, 1052
Sau3AI GATC 6 cut(s) 107, 730, 772, 781, 810, 844
Sau96I GGNCC 2 cut(s) 439, 984
SchI GAGTC 3 cut(s) 481, 953, 1069
ScrFI CCNGG 2 cut(s) 594, 615
SduI GDGCHC 1 cut(s) 88
SfaNI GCATC 1 cut(s) 245
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 1 cut(s) 984
SmiMI CAYNNNNRTG 2 cut(s) 360, 758
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
Sse9I AATT 6 cut(s) 67, 334, 431, 559, 606, 708
SsiI CCGC 2 cut(s) 81, 1066
SspMI CTAG 1 cut(s) 981
SstI GAGCTC 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 592, 613
TaaI ACNGT 4 cut(s) 298, 413, 424, 881
TaiI ACGT 2 cut(s) 345, 700
TaqI TCGA 2 cut(s) 118, 1058
TasI AATT 6 cut(s) 67, 334, 431, 559, 606, 708
TfiI GAWTC 2 cut(s) 230, 950
Tru1I TTAA 3 cut(s) 348, 738, 935
Tru9I TTAA 3 cut(s) 348, 738, 935
TscAI CASTG 3 cut(s) 249, 429, 497
TseFI GTSAC 1 cut(s) 749
TseI GCWGC 3 cut(s) 966, 1027, 1051
Tsp45I GTSAC 1 cut(s) 749
TspDTI ATGAA 4 cut(s) 88, 315, 522, 570
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 3 cut(s) 249, 429, 497
Van91I CCANNNNNTGG 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 984
XapI RAATTY 3 cut(s) 67, 559, 606
XceI RCATGY 1 cut(s) 1093
XspI CTAG 1 cut(s) 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.