RchiOBHm_Chr7g0203321

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016854
Physical Location & Seq
Reverse (-)
21039013 .. 21042468
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18197

Sequence Viewer

Length: 1515 bp
ATGGACCATCATCACCTCCAACAGCTTCACCAACAGCAACTCCTCCAAGCCCAACACCAACACCACCACCACCAACAACACTTCCAACCCCCACAACAACCACACTACCATTACAATACCAATACCCACCAATCTTACTACCCTCCTCAATATCAATACCCACAACAACAACAACTACAACTACAACAAAATGGTTATCACCCATCAAACTATACCAATCTCTATCCCCAGCAGGCTTATCCCCAGTCGGCAGTGCCTCGACGACCTGAGCTTCCGGTCCCGCCAGCGGTGGCTGTGCTGTCTCGTTTGGTGCGATACTCAGGGGCTGTGGGGTCTCAATGGAACACTCCACCAATGGTTGGCCAACCTCCATATAGGGGTATCGGTGAAGGGGGTGGTGAACTATTCAGAGGACATCAAGGAAATTTTGGCTACAGCGGAGCTCACCCATCTTTCATTGGGGGATCACATGGTCGAGGTAGGGGTGGTTCTTGGCTTTTAGTGGAACATGGTGTCCCTTCAACATCTTTTCATCCTCCCCATCAGACATACCAATCTCCGGTGACGCTGACACCTCAGAAGTCGGAATCTGCATCAGCACTGAAAACGGAAGTTCCAAACTACCAAAAACCTCAAGTTGCTCAAAAAACCACGGTTACTTGGTGTGAAGTTTGTAATGCTTCATGCGCTAATTTGGACGTTCTTAAACAGCACCAAAATGGAAAGCGACATCAAAGGAACCTGAGAAAAATGGAAAGGTTGAAAAATGGTATCAGAACAGTGGCCAAATTGCAGGGCCAACAGCTTTGCACTTTTAATACAAAGCTTGAAGTGCCTCATCAGACTCAGTGTGAACAAGACGATGAAGAGAAAAACACAACAGAGAATATACCATACGAACCTGTTGGCTATGAAAATTCAAGGGAAACTGGAAAACAAAATAAGAACCCCGGACAGCCTGAAATTCCACCAGGTGATGCGTCTGACAATGTGAAGCGTGGTAAGAAGCGCAAGAAAACGAAAACTCCGAAGCACTCAGTCGAACCTTCCAAACGTAAAGTTGTAATTCCGATAGTTTGTGACTTGTGTAATGTCAAGTGTGAGAAGCAGGCTTTTTTCGATCGCCATCTTTCAGGAAAGAAGCATGTTGCCAAGTATAAACGATTTAAAGGCCATGAAGCTATGCATCGACCCGTGGGGCTTCAAGTTCTATACCCCCCTAACCCATTGGCTGAAACTATATTCCAACCCCAAGAAGGAAGATATATACCTCCCCATGTGTACCAAGATATACAGGTGGAAACAAGTTCAGATCCCCAATTTCAACAAAATCCAACCTCTGAAGGATCTGAATCCATTCTTGGATGTGGAAGCTCTAGTACCATTACAACAGCTCTAGAAACCAACATCACAACAGAACCGGAAATCAGCCAAGAAGCTACCATTGAGGTCCAACATTTGAATAGTATTTCAGAGACTGGTCAGGGGTCCAATACTTTTTCACAGGACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

504

Amino Acids

56.79

Weight (kDa)

8.82

Isoelectric Point (pI)

55.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 221 - 244 6.2e-07 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016854)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18930
prunus_persica Prupe.5G069800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203321
rosa_laevigata RLG00000003535
rosa_multiflora Rmu_sc0002286.1_g000001 Rmu_sc0003582.1_g000006
rosa_roxburghii Rroxscaffold_3G00253880
rosa_rugosa Rorug07G0075500 Rorug07G0075600
rosa_samantha Rh7AG205200 Rh7BG204600 Rh7CG216400 Rh7DG211700
rosa_wichuraiana Rw7G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 359
AciI CCGC 3 cut(s) 281, 287, 438
AclWI GGATC 3 cut(s) 472, 1307, 1354
AcoI YGGCCR 2 cut(s) 361, 783
AcsI RAATTY 3 cut(s) 424, 916, 963
AcuI CTGAAG 1 cut(s) 1362
AdeI CACNNNGTG 1 cut(s) 974
AfaI GTAC 2 cut(s) 1283, 1381
AfiI CCNNNNNNNGG 5 cut(s) 286, 359, 377, 559, 1256
AgsI TTSAA 7 cut(s) 522, 763, 830, 921, 1205, 1325, 1462
AjnI CCWGG 1 cut(s) 970
AjuI GAANNNNNNNTTGG 2 cut(s) 1344, 1376
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
AluBI AGCT 9 cut(s) 25, 271, 443, 805, 826, 1181, 1374, 1394, 1439
AluI AGCT 9 cut(s) 25, 271, 443, 805, 826, 1181, 1374, 1394, 1439
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 3 cut(s) 306, 339, 1469
AlwI GGATC 3 cut(s) 472, 1307, 1354
AlwNI CAGNNNCTG 2 cut(s) 326, 1478
AoxI GGCC 4 cut(s) 361, 783, 796, 1171
ApoI RAATTY 3 cut(s) 424, 916, 963
Asp700I GAANNNNTTC 1 cut(s) 1356
AspLEI GCGC 2 cut(s) 689, 1011
AspS9I GGNCC 5 cut(s) 4, 277, 796, 1450, 1488
AsuC2I CCSGG 1 cut(s) 951
AsuHPI GGTGA 8 cut(s) 5, 20, 191, 398, 410, 437, 574, 986
AvaII GGWCC 4 cut(s) 4, 277, 1450, 1488
BalI TGGCCA 2 cut(s) 363, 785
BanII GRGCYC 1 cut(s) 445
BarI GAAGNNNNNNTAC 2 cut(s) 1363, 1395
Bbv12I GWGCWC 1 cut(s) 445
BccI CCATC 5 cut(s) 15, 211, 457, 549, 1134
BciT130I CCWGG 1 cut(s) 972
BcnI CCSGG 1 cut(s) 951
BcoDI GTCTC 3 cut(s) 306, 339, 1469
BfaI CTAG 2 cut(s) 1377, 1397
BfmI CTRYAG 1 cut(s) 433
Bme1390I CCNGG 2 cut(s) 951, 972
Bme18I GGWCC 4 cut(s) 4, 277, 1450, 1488
BmgT120I GGNCC 5 cut(s) 4, 277, 796, 1450, 1488
BmiI GGNNCC 3 cut(s) 279, 740, 1489
BmrFI CCNGG 2 cut(s) 951, 972
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 3 cut(s) 602, 967, 1195
BmuI ACTGGG 1 cut(s) 238
Bpu10I CCTNAGC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 618
BpuMI CCSGG 1 cut(s) 951
BsaBI GATNNNNATC 2 cut(s) 1125, 1351
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 651, 949, 1194
BsaWI WCCGGW 3 cut(s) 274, 559, 1420
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 1009, 1039
Bsc4I CCNNNNNNNGG 5 cut(s) 286, 359, 377, 559, 1256
Bse1I ACTGG 3 cut(s) 244, 934, 1483
Bse8I GATNNNNATC 2 cut(s) 1125, 1351
BseBI CCWGG 1 cut(s) 972
BseDI CCNNGG 3 cut(s) 651, 949, 1194
BseGI GGATG 2 cut(s) 532, 1370
BseJI GATNNNNATC 2 cut(s) 1125, 1351
BseLI CCNNNNNNNGG 5 cut(s) 286, 359, 377, 559, 1256
BseMII CTCAG 6 cut(s) 258, 333, 590, 734, 860, 1050
BseNI ACTGG 3 cut(s) 244, 934, 1483
BseRI GAGGAG 2 cut(s) 32, 135
BseYI CCCAGC 1 cut(s) 228
Bsh1285I CGRYCG 1 cut(s) 1123
BshFI GGCC 4 cut(s) 363, 785, 798, 1173
BsiEI CGRYCG 1 cut(s) 1123
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 4 cut(s) 275, 560, 951, 1421
BslFI GGGAC 2 cut(s) 263, 500
BslI CCNNNNNNNGG 5 cut(s) 286, 359, 377, 559, 1256
BsmAI GTCTC 3 cut(s) 306, 339, 1469
BsmFI GGGAC 2 cut(s) 263, 500
BsnI GGCC 4 cut(s) 363, 785, 798, 1173
Bso31I GGTCTC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 4 cut(s) 464, 1120, 1312, 1346
BspACI CCGC 3 cut(s) 281, 287, 438
BspANI GGCC 4 cut(s) 363, 785, 798, 1173
BspCNI CTCAG 6 cut(s) 259, 332, 589, 735, 859, 1049
BspLI GGNNCC 3 cut(s) 279, 740, 1489
BspPI GGATC 3 cut(s) 472, 1307, 1354
BspTNI GGTCTC 1 cut(s) 339
BsrI ACTGG 3 cut(s) 244, 934, 1483
BssECI CCNNGG 3 cut(s) 651, 949, 1194
BssMI GATC 4 cut(s) 464, 1120, 1312, 1346
Bst2UI CCWGG 1 cut(s) 972
Bst4CI ACNGT 3 cut(s) 655, 781, 1511
Bst6I CTCTTC 1 cut(s) 861
BstC8I GCNNGC 3 cut(s) 234, 285, 1110
BstDEI CTNAG 6 cut(s) 267, 319, 576, 743, 846, 1036
BstDSI CCRYGG 2 cut(s) 651, 1194
BstF5I GGATG 2 cut(s) 532, 1370
BstHHI GCGC 2 cut(s) 689, 1011
BstKTI GATC 4 cut(s) 467, 1123, 1315, 1349
BstMAI GTCTC 3 cut(s) 306, 339, 1469
BstMBI GATC 4 cut(s) 464, 1120, 1312, 1346
BstMCI CGRYCG 1 cut(s) 1123
BstMWI GCNNNNNNNGC 2 cut(s) 686, 832
BstNI CCWGG 1 cut(s) 972
BstNSI RCATGY 1 cut(s) 1148
BstSCI CCNGG 2 cut(s) 949, 970
BstSFI CTRYAG 1 cut(s) 433
BstX2I RGATCY 2 cut(s) 1312, 1346
BstYI RGATCY 2 cut(s) 1312, 1346
BsuRI GGCC 4 cut(s) 363, 785, 798, 1173
BtgI CCRYGG 2 cut(s) 651, 1194
BtsCI GGATG 2 cut(s) 532, 1370
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 4 cut(s) 258, 599, 786, 854
Cac8I GCNNGC 3 cut(s) 234, 285, 1110
CaiI CAGNNNCTG 2 cut(s) 326, 1478
CfoI GCGC 2 cut(s) 689, 1011
Cfr13I GGNCC 5 cut(s) 4, 277, 796, 1450, 1488
CseI GACGC 2 cut(s) 574, 969
CsiI ACCWGGT 1 cut(s) 970
Csp6I GTAC 2 cut(s) 1282, 1380
CviAII CATG 6 cut(s) 470, 509, 684, 1145, 1175, 1277
CviQI GTAC 2 cut(s) 1282, 1380
DdeI CTNAG 6 cut(s) 267, 319, 576, 743, 846, 1036
DpnI GATC 4 cut(s) 466, 1122, 1314, 1348
DpnII GATC 4 cut(s) 464, 1120, 1312, 1346
DraI TTTAAA 1 cut(s) 1168
DraIII CACNNNGTG 1 cut(s) 974
EaeI YGGCCR 2 cut(s) 361, 783
Eam1104I CTCTTC 1 cut(s) 861
EarI CTCTTC 1 cut(s) 861
Ecl136II GAGCTC 1 cut(s) 443
Eco24I GRGCYC 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 339
Eco47I GGWCC 4 cut(s) 4, 277, 1450, 1488
Eco53kI GAGCTC 1 cut(s) 443
Eco57I CTGAAG 1 cut(s) 1362
EcoICRI GAGCTC 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 970
EcoT22I ATGCAT 1 cut(s) 1188
EcoT38I GRGCYC 1 cut(s) 445
FaeI CATG 6 cut(s) 473, 512, 687, 1148, 1178, 1280
FaqI GGGAC 2 cut(s) 263, 500
FatI CATG 6 cut(s) 469, 508, 683, 1144, 1174, 1276
FauI CCCGC 1 cut(s) 288
FokI GGATG 2 cut(s) 519, 1377
FriOI GRGCYC 1 cut(s) 445
FspBI CTAG 2 cut(s) 1377, 1397
GlaI GCGC 2 cut(s) 688, 1010
GsaI CCCAGC 1 cut(s) 232
HaeIII GGCC 4 cut(s) 363, 785, 798, 1173
HapII CCGG 4 cut(s) 275, 560, 951, 1421
HgaI GACGC 2 cut(s) 574, 969
HhaI GCGC 2 cut(s) 689, 1011
Hin1II CATG 6 cut(s) 473, 512, 687, 1148, 1178, 1280
Hin6I GCGC 2 cut(s) 687, 1009
HinP1I GCGC 2 cut(s) 687, 1009
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 3 cut(s) 587, 844, 1352
HpaII CCGG 4 cut(s) 275, 560, 951, 1421
HphI GGTGA 8 cut(s) 5, 20, 191, 398, 410, 437, 574, 986
Hpy166II GTNNAC 3 cut(s) 401, 854, 1282
Hpy188III TCNNGA 2 cut(s) 1134, 1397
Hpy8I GTNNAC 3 cut(s) 401, 854, 1282
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 5 cut(s) 383, 528, 1056, 1250, 1337
HpyCH4III ACNGT 3 cut(s) 655, 781, 1511
HpyCH4IV ACGT 2 cut(s) 699, 1054
HpyCH4V TGCA 4 cut(s) 593, 793, 810, 1186
HpyF10VI GCNNNNNNNGC 2 cut(s) 686, 832
HpyF3I CTNAG 6 cut(s) 267, 319, 576, 743, 846, 1036
HpySE526I ACGT 2 cut(s) 699, 1054
Hsp92II CATG 6 cut(s) 473, 512, 687, 1148, 1178, 1280
HspAI GCGC 2 cut(s) 687, 1009
Kzo9I GATC 4 cut(s) 464, 1120, 1312, 1346
LmnI GCTCC 1 cut(s) 440
LweI GCATC 3 cut(s) 602, 967, 1195
MabI ACCWGGT 1 cut(s) 970
MaeI CTAG 2 cut(s) 1377, 1397
MaeII ACGT 2 cut(s) 699, 1054
MaeIII GTNAC 3 cut(s) 562, 655, 1079
MalI GATC 4 cut(s) 466, 1122, 1314, 1348
MboI GATC 4 cut(s) 464, 1120, 1312, 1346
MboII GAAGA 2 cut(s) 878, 1272
MflI RGATCY 2 cut(s) 1312, 1346
MhlI GDGCHC 1 cut(s) 445
MlsI TGGCCA 2 cut(s) 363, 785
MluCI AATT 7 cut(s) 424, 691, 788, 916, 963, 1065, 1319
MluNI TGGCCA 2 cut(s) 363, 785
MlyI GAGTC 1 cut(s) 838
MmeI TCCRAC 6 cut(s) 43, 109, 564, 1270, 1358, 1477
Mox20I TGGCCA 2 cut(s) 363, 785
Mph1103I ATGCAT 1 cut(s) 1188
MroXI GAANNNNTTC 1 cut(s) 1356
MscI TGGCCA 2 cut(s) 363, 785
MseI TTAA 4 cut(s) 705, 816, 1167, 1513
MslI CAYNNNNRTG 1 cut(s) 717
Msp20I TGGCCA 2 cut(s) 363, 785
MspA1I CMGCKG 2 cut(s) 287, 438
MspI CCGG 4 cut(s) 275, 560, 951, 1421
MspR9I CCNGG 2 cut(s) 951, 972
MvaI CCWGG 1 cut(s) 972
MwoI GCNNNNNNNGC 2 cut(s) 686, 832
NciI CCSGG 1 cut(s) 951
NdeII GATC 4 cut(s) 464, 1120, 1312, 1346
NlaIII CATG 6 cut(s) 473, 512, 687, 1148, 1178, 1280
NlaIV GGNNCC 3 cut(s) 279, 740, 1489
NmuCI GTSAC 2 cut(s) 562, 1079
NsiI ATGCAT 1 cut(s) 1188
NspI RCATGY 1 cut(s) 1148
PcsI WCGNNNNNNNCGW 2 cut(s) 310, 1025
PdmI GAANNNNTTC 1 cut(s) 1356
PfeI GAWTC 2 cut(s) 587, 1352
PflMI CCANNNNNTGG 1 cut(s) 359
Ple19I CGATCG 1 cut(s) 1123
PleI GAGTC 1 cut(s) 838
PpsI GAGTC 1 cut(s) 838
Psp124BI GAGCTC 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 970
PspFI CCCAGC 1 cut(s) 228
PspGI CCWGG 1 cut(s) 970
PspN4I GGNNCC 3 cut(s) 279, 740, 1489
PspPI GGNCC 5 cut(s) 4, 277, 796, 1450, 1488
PsrI GAACNNNNNNTAC 2 cut(s) 472, 504
PstNI CAGNNNCTG 2 cut(s) 326, 1478
PsuI RGATCY 2 cut(s) 1312, 1346
PvuI CGATCG 1 cut(s) 1123
RsaI GTAC 2 cut(s) 1283, 1381
RsaNI GTAC 2 cut(s) 1282, 1380
RseI CAYNNNNRTG 1 cut(s) 717
SacI GAGCTC 1 cut(s) 445
SaqAI TTAA 4 cut(s) 705, 816, 1167, 1513
Sau3AI GATC 4 cut(s) 464, 1120, 1312, 1346
Sau96I GGNCC 5 cut(s) 4, 277, 796, 1450, 1488
SchI GAGTC 1 cut(s) 838
ScrFI CCNGG 2 cut(s) 951, 972
SduI GDGCHC 1 cut(s) 445
SexAI ACCWGGT 1 cut(s) 970
SfaNI GCATC 3 cut(s) 602, 967, 1195
SfcI CTRYAG 1 cut(s) 433
SinI GGWCC 4 cut(s) 4, 277, 1450, 1488
SmiMI CAYNNNNRTG 1 cut(s) 717
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
Sse9I AATT 7 cut(s) 424, 691, 788, 916, 963, 1065, 1319
SsiI CCGC 3 cut(s) 281, 287, 438
SspMI CTAG 2 cut(s) 1377, 1397
SstI GAGCTC 1 cut(s) 445
StyD4I CCNGG 2 cut(s) 949, 970
TaaI ACNGT 3 cut(s) 655, 781, 1511
TaiI ACGT 2 cut(s) 702, 1057
TaqI TCGA 5 cut(s) 259, 475, 1041, 1119, 1189
TasI AATT 7 cut(s) 424, 691, 788, 916, 963, 1065, 1319
TfiI GAWTC 2 cut(s) 587, 1352
Tru1I TTAA 4 cut(s) 705, 816, 1167, 1513
Tru9I TTAA 4 cut(s) 705, 816, 1167, 1513
TscAI CASTG 4 cut(s) 258, 606, 786, 854
TseFI GTSAC 2 cut(s) 562, 1079
Tsp45I GTSAC 2 cut(s) 562, 1079
TspDTI ATGAA 6 cut(s) 445, 521, 672, 879, 927, 1191
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 4 cut(s) 258, 606, 786, 854
Van91I CCANNNNNTGG 1 cut(s) 359
VpaK11BI GGWCC 4 cut(s) 4, 277, 1450, 1488
XapI RAATTY 3 cut(s) 424, 916, 963
XbaI TCTAGA 1 cut(s) 1396
XceI RCATGY 1 cut(s) 1148
XmnI GAANNNNTTC 1 cut(s) 1356
XspI CTAG 2 cut(s) 1377, 1397
Zsp2I ATGCAT 1 cut(s) 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.