Rh7CG216400

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016854
Physical Location & Seq
Reverse (-)
19686651 .. 19689618
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG216400.1

Sequence Viewer

Length: 1146 bp
ATGGTTGGCCAACCTCCATATAGGGGTATCGGTGAAGTGGGTGGTGAACTATTCAGAGGACATCAAGGAAATTTTGGCTACAGCGGAGCTCACCCATCTTTCATTGGGGGATCACATGGTCGAGGTAGGGGTGGTTCTTGGCTTTTAGTGGAACATGGTGTCCCTTCAACATCTTCTCATCCTCCCCATCAGACATACCAATCTCCGGTAACGCTGACACCTCAGAAGTCAGAATCTGCATCAGCACTGAAAACGGAAGTTCCAAACTACCAAAAACCTCAAGTTGCTCAAAAAACCACGGTTACTTGGTGTGAAGTTTGTAATGCTTCATGCGCTAATTTGGACGTTCTTAAACAGCACCAAAATGGAAAGCGACATCAAAGGAACCTGAGAAAAATGGAAAGGTTGAAAAATGGTATCAGAACAGTGGCCAAATTGCAGGGCCAACAGCTTTGCACTTCTAATACAAAGCTTGAAGTGCCTCATCAGACTCAGTGTGAACAAGACGATCAAGAGAAAAACACAACAAAGGAACCTGTTGGCTATGAAAATTCAAGGGAAACTGGAAAACAAAATAAGAACCCCGGACAGCCTGAAATTCCACCAGGTGATGGGTCTGACAATGTGAAGCGTGGTAAGAAGCGCAAGAAAACGAAAACTCCGAAGCAGTCAGTCGAACCTTCCAAACGTAAAGTCGTAATTCCGATAGTTTGTGACTTGTGTAATGTCAAGTGTGACAAGCAGGCTTTTTTCGATCGCCATCTTTCAGGAAAGAAGCATGTTGCCAAGTATAAACGATTTAAAGGCCATGAAGCTATGCATCGACCCGTGGGGCTTCAAGTTCTATACCCCCCTAACCCATTGGCTGAAACTATATTCCAACCCCAAGAAGGAAGATATATACCTCCCCATGTGTACCAAGATATACAGGTGGAAACAAGTTCAGATCCCCAATTTCAACAAAATCCAACCTCTGAAGGATCTGAATCCATTCTTGGATGTGGAAGCTCTAGTACCATTACAACAGCTCTAGAAACCAACATCACAACAGAACCGGAAATCAGCCAAGAAGCTACCATTGAGGTCCAACATTTGAATAGTATTTCAGAGACTGGTCAGGGGTCCAATACTTTTTCACAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

381

Amino Acids

42.09

Weight (kDa)

9.0

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 103 - 126 4.4e-07 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016854)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18930
prunus_persica Prupe.5G069800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203321
rosa_laevigata RLG00000003535
rosa_multiflora Rmu_sc0002286.1_g000001 Rmu_sc0003582.1_g000006
rosa_roxburghii Rroxscaffold_3G00253880
rosa_rugosa Rorug07G0075500 Rorug07G0075600
rosa_samantha Rh7AG205200 Rh7BG204600 Rh7CG216400 Rh7DG211700
rosa_wichuraiana Rw7G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 611
AciI CCGC 1 cut(s) 84
AclWI GGATC 3 cut(s) 118, 941, 988
AcoI YGGCCR 2 cut(s) 7, 429
AcsI RAATTY 3 cut(s) 70, 550, 597
AcuI CTGAAG 1 cut(s) 996
AdeI CACNNNGTG 1 cut(s) 608
AfaI GTAC 2 cut(s) 917, 1015
AfiI CCNNNNNNNGG 4 cut(s) 23, 205, 611, 890
AgsI TTSAA 7 cut(s) 168, 409, 476, 555, 839, 959, 1096
AjnI CCWGG 1 cut(s) 604
AjuI GAANNNNNNNTTGG 2 cut(s) 978, 1010
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 7 cut(s) 89, 451, 472, 815, 1008, 1028, 1073
AluI AGCT 7 cut(s) 89, 451, 472, 815, 1008, 1028, 1073
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 1103
AlwI GGATC 3 cut(s) 118, 941, 988
AlwNI CAGNNNCTG 2 cut(s) 236, 1112
AoxI GGCC 4 cut(s) 7, 429, 442, 805
ApoI RAATTY 3 cut(s) 70, 550, 597
ArsI GACNNNNNNTTYG 2 cut(s) 678, 710
Asp700I GAANNNNTTC 1 cut(s) 990
AspLEI GCGC 2 cut(s) 335, 645
AspS9I GGNCC 3 cut(s) 442, 1084, 1122
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 4 cut(s) 44, 56, 83, 620
AvaII GGWCC 2 cut(s) 1084, 1122
BalI TGGCCA 2 cut(s) 9, 431
BanII GRGCYC 1 cut(s) 91
BarI GAAGNNNNNNTAC 2 cut(s) 997, 1029
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 4 cut(s) 103, 195, 605, 768
BciT130I CCWGG 1 cut(s) 606
BcnI CCSGG 1 cut(s) 585
BcoDI GTCTC 1 cut(s) 1103
BfaI CTAG 2 cut(s) 1011, 1031
BfmI CTRYAG 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 585, 606
Bme18I GGWCC 2 cut(s) 1084, 1122
BmgT120I GGNCC 3 cut(s) 442, 1084, 1122
BmiI GGNNCC 3 cut(s) 386, 534, 1123
BmrFI CCNGG 2 cut(s) 585, 606
BmsI GCATC 2 cut(s) 248, 829
BpuEI CTTGAG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 585
BsaBI GATNNNNATC 2 cut(s) 759, 985
BsaJI CCNNGG 3 cut(s) 297, 583, 828
BsaWI WCCGGW 2 cut(s) 205, 1054
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 205, 611, 890
Bse1I ACTGG 2 cut(s) 568, 1117
Bse8I GATNNNNATC 2 cut(s) 759, 985
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 3 cut(s) 297, 583, 828
BseGI GGATG 2 cut(s) 178, 1004
BseJI GATNNNNATC 2 cut(s) 759, 985
BseLI CCNNNNNNNGG 4 cut(s) 23, 205, 611, 890
BseMII CTCAG 3 cut(s) 236, 380, 506
BseNI ACTGG 2 cut(s) 568, 1117
Bsh1285I CGRYCG 1 cut(s) 757
BshFI GGCC 4 cut(s) 9, 431, 444, 807
BsiEI CGRYCG 1 cut(s) 757
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 3 cut(s) 206, 585, 1055
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 4 cut(s) 23, 205, 611, 890
BsmAI GTCTC 1 cut(s) 1103
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 4 cut(s) 9, 431, 444, 807
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 5 cut(s) 110, 508, 754, 946, 980
BspACI CCGC 1 cut(s) 84
BspANI GGCC 4 cut(s) 9, 431, 444, 807
BspCNI CTCAG 3 cut(s) 235, 381, 505
BspLI GGNNCC 3 cut(s) 386, 534, 1123
BspPI GGATC 3 cut(s) 118, 941, 988
BsrI ACTGG 2 cut(s) 568, 1117
BssECI CCNNGG 3 cut(s) 297, 583, 828
BssMI GATC 5 cut(s) 110, 508, 754, 946, 980
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 2 cut(s) 301, 427
BstC8I GCNNGC 1 cut(s) 744
BstDEI CTNAG 3 cut(s) 222, 389, 492
BstDSI CCRYGG 2 cut(s) 297, 828
BstF5I GGATG 2 cut(s) 178, 1004
BstHHI GCGC 2 cut(s) 335, 645
BstKTI GATC 5 cut(s) 113, 511, 757, 949, 983
BstMAI GTCTC 1 cut(s) 1103
BstMBI GATC 5 cut(s) 110, 508, 754, 946, 980
BstMCI CGRYCG 1 cut(s) 757
BstMWI GCNNNNNNNGC 2 cut(s) 332, 478
BstNI CCWGG 1 cut(s) 606
BstNSI RCATGY 1 cut(s) 782
BstSCI CCNGG 2 cut(s) 583, 604
BstSFI CTRYAG 1 cut(s) 79
BstX2I RGATCY 2 cut(s) 946, 980
BstYI RGATCY 2 cut(s) 946, 980
BsuRI GGCC 4 cut(s) 9, 431, 444, 807
BtgI CCRYGG 2 cut(s) 297, 828
BtsCI GGATG 2 cut(s) 178, 1004
BtsIMutI CAGTG 3 cut(s) 245, 432, 500
Cac8I GCNNGC 1 cut(s) 744
CaiI CAGNNNCTG 2 cut(s) 236, 1112
CfoI GCGC 2 cut(s) 335, 645
Cfr13I GGNCC 3 cut(s) 442, 1084, 1122
CsiI ACCWGGT 1 cut(s) 604
Csp6I GTAC 2 cut(s) 916, 1014
CviAII CATG 6 cut(s) 116, 155, 330, 779, 809, 911
CviQI GTAC 2 cut(s) 916, 1014
DdeI CTNAG 3 cut(s) 222, 389, 492
DpnI GATC 5 cut(s) 112, 510, 756, 948, 982
DpnII GATC 5 cut(s) 110, 508, 754, 946, 980
DraI TTTAAA 1 cut(s) 802
DraIII CACNNNGTG 1 cut(s) 608
EaeI YGGCCR 2 cut(s) 7, 429
Ecl136II GAGCTC 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 1084, 1122
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 996
EcoICRI GAGCTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 604
EcoT22I ATGCAT 1 cut(s) 822
EcoT38I GRGCYC 1 cut(s) 91
FaeI CATG 6 cut(s) 119, 158, 333, 782, 812, 914
FaqI GGGAC 1 cut(s) 146
FatI CATG 6 cut(s) 115, 154, 329, 778, 808, 910
FokI GGATG 2 cut(s) 165, 1011
FriOI GRGCYC 1 cut(s) 91
FspBI CTAG 2 cut(s) 1011, 1031
GlaI GCGC 2 cut(s) 334, 644
HaeIII GGCC 4 cut(s) 9, 431, 444, 807
HapII CCGG 3 cut(s) 206, 585, 1055
HhaI GCGC 2 cut(s) 335, 645
Hin1II CATG 6 cut(s) 119, 158, 333, 782, 812, 914
Hin6I GCGC 2 cut(s) 333, 643
HinP1I GCGC 2 cut(s) 333, 643
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 3 cut(s) 233, 490, 986
HpaII CCGG 3 cut(s) 206, 585, 1055
HphI GGTGA 4 cut(s) 44, 56, 83, 620
Hpy166II GTNNAC 3 cut(s) 47, 500, 916
Hpy188III TCNNGA 3 cut(s) 512, 768, 1031
Hpy8I GTNNAC 3 cut(s) 47, 500, 916
HpyAV CCTTC 4 cut(s) 174, 690, 884, 971
HpyCH4III ACNGT 2 cut(s) 301, 427
HpyCH4IV ACGT 2 cut(s) 345, 688
HpyCH4V TGCA 4 cut(s) 239, 439, 456, 820
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 478
HpyF3I CTNAG 3 cut(s) 222, 389, 492
HpySE526I ACGT 2 cut(s) 345, 688
Hsp92II CATG 6 cut(s) 119, 158, 333, 782, 812, 914
HspAI GCGC 2 cut(s) 333, 643
Kzo9I GATC 5 cut(s) 110, 508, 754, 946, 980
LmnI GCTCC 1 cut(s) 86
LweI GCATC 2 cut(s) 248, 829
MabI ACCWGGT 1 cut(s) 604
MaeI CTAG 2 cut(s) 1011, 1031
MaeII ACGT 2 cut(s) 345, 688
MaeIII GTNAC 4 cut(s) 208, 301, 713, 734
MalI GATC 5 cut(s) 112, 510, 756, 948, 982
MboI GATC 5 cut(s) 110, 508, 754, 946, 980
MboII GAAGA 2 cut(s) 165, 906
MflI RGATCY 2 cut(s) 946, 980
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 2 cut(s) 9, 431
MluCI AATT 7 cut(s) 70, 337, 434, 550, 597, 699, 953
MluNI TGGCCA 2 cut(s) 9, 431
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 3 cut(s) 904, 992, 1111
Mox20I TGGCCA 2 cut(s) 9, 431
Mph1103I ATGCAT 1 cut(s) 822
MroXI GAANNNNTTC 1 cut(s) 990
MscI TGGCCA 2 cut(s) 9, 431
MseI TTAA 2 cut(s) 351, 801
MslI CAYNNNNRTG 1 cut(s) 363
Msp20I TGGCCA 2 cut(s) 9, 431
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 3 cut(s) 206, 585, 1055
MspR9I CCNGG 2 cut(s) 585, 606
MvaI CCWGG 1 cut(s) 606
MwoI GCNNNNNNNGC 2 cut(s) 332, 478
NciI CCSGG 1 cut(s) 585
NdeII GATC 5 cut(s) 110, 508, 754, 946, 980
NlaIII CATG 6 cut(s) 119, 158, 333, 782, 812, 914
NlaIV GGNNCC 3 cut(s) 386, 534, 1123
NmuCI GTSAC 2 cut(s) 713, 734
NsiI ATGCAT 1 cut(s) 822
NspI RCATGY 1 cut(s) 782
PcsI WCGNNNNNNNCGW 1 cut(s) 659
PdmI GAANNNNTTC 1 cut(s) 990
PfeI GAWTC 2 cut(s) 233, 986
PflMI CCANNNNNTGG 1 cut(s) 611
Ple19I CGATCG 1 cut(s) 757
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 3 cut(s) 386, 534, 1123
PspPI GGNCC 3 cut(s) 442, 1084, 1122
PsrI GAACNNNNNNTAC 2 cut(s) 118, 150
PstNI CAGNNNCTG 2 cut(s) 236, 1112
PsuI RGATCY 2 cut(s) 946, 980
PvuI CGATCG 1 cut(s) 757
RsaI GTAC 2 cut(s) 917, 1015
RsaNI GTAC 2 cut(s) 916, 1014
RseI CAYNNNNRTG 1 cut(s) 363
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 351, 801
Sau3AI GATC 5 cut(s) 110, 508, 754, 946, 980
Sau96I GGNCC 3 cut(s) 442, 1084, 1122
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 2 cut(s) 585, 606
SduI GDGCHC 1 cut(s) 91
SexAI ACCWGGT 1 cut(s) 604
SfaNI GCATC 2 cut(s) 248, 829
SfcI CTRYAG 1 cut(s) 79
SinI GGWCC 2 cut(s) 1084, 1122
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 7 cut(s) 70, 337, 434, 550, 597, 699, 953
SsiI CCGC 1 cut(s) 84
SspMI CTAG 2 cut(s) 1011, 1031
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 583, 604
TaaI ACNGT 2 cut(s) 301, 427
TaiI ACGT 2 cut(s) 348, 691
TaqI TCGA 4 cut(s) 121, 675, 753, 823
TasI AATT 7 cut(s) 70, 337, 434, 550, 597, 699, 953
TfiI GAWTC 2 cut(s) 233, 986
Tru1I TTAA 2 cut(s) 351, 801
Tru9I TTAA 2 cut(s) 351, 801
TscAI CASTG 3 cut(s) 252, 432, 500
TseFI GTSAC 2 cut(s) 713, 734
Tsp45I GTSAC 2 cut(s) 713, 734
TspDTI ATGAA 4 cut(s) 91, 318, 561, 825
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 3 cut(s) 252, 432, 500
Van91I CCANNNNNTGG 1 cut(s) 611
VpaK11BI GGWCC 2 cut(s) 1084, 1122
XapI RAATTY 3 cut(s) 70, 550, 597
XbaI TCTAGA 1 cut(s) 1030
XceI RCATGY 1 cut(s) 782
XmnI GAANNNNTTC 1 cut(s) 990
XspI CTAG 2 cut(s) 1011, 1031
Zsp2I ATGCAT 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.