FvH4_5g20622

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017671
Physical Location & Seq
Reverse (-)
12243047 .. 12243574
528 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20622.t1

Sequence Viewer

Length: 528 bp
ATGTTGAAGTATGGAGTAGGAATGCCTTGGGATTGGGATCCTTTCCACACAATTAGCTACCTCACCTCGATAAAAGCATTTGTTCTTGTCATTCTGTTTGTCATCGTTCCCTTCATCTCCGTCAAAGTCCATGTCCCTCTCACCACTCATGTAACACCAGCTTCCATTACTACTAATACCAGCAGTGTAGTACTCAGACGAATCGAAGAGCTTTCTGCGCCTCTTGCGGTTACACTGATGGCTGGTGCGGTTGTCCTCCCACAAGCTCTCTTCTGGTATGCCTATCCCACTATTATACTCATCCCCTCTTGCCTCTGTGTGCTCAACCGCTTTGCGAATTGGCTCCATGCCGTCCTTGTTACTATACCAGTTCTTGACGTTGTACTAAGCGCAACGGCTGTTCGTTGGCGAGGCGCCTTCGGGACTGAACCTGATCATAATGAAGCAAGTGAGGGAGACACACAAGGAGTGGAGATGCGATTAGGTGACGCTATGGAAGATCTTGAAGCTGGGGGAGTAACTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.12

Weight (kDa)

5.19

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20622
rosa_laevigata RLG00000003341 RLG00000005938
rosa_multiflora Rmu_sc0000821.1_g000001
rosa_rugosa Rorug07G0094300
rosa_samantha Rh3CG232200 Rh4AG415500 Rh6BG370700 Rh7AG226400 Rh7BG222400 Rh7CG240300 Rh7DG232500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 413
AciI CCGC 3 cut(s) 227, 248, 328
AclWI GGATC 2 cut(s) 32, 45
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 2 cut(s) 192, 384
AgsI TTSAA 2 cut(s) 7, 506
AluBI AGCT 5 cut(s) 57, 161, 211, 266, 509
AluI AGCT 5 cut(s) 57, 161, 211, 266, 509
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 450
AlwI GGATC 2 cut(s) 32, 45
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AspLEI GCGC 3 cut(s) 220, 392, 416
AsuHPI GGTGA 3 cut(s) 55, 133, 497
BamHI GGATCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 324
BccI CCATC 1 cut(s) 232
BceAI ACGGC 2 cut(s) 335, 411
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 450
BfaI CTAG 1 cut(s) 526
BfoI RGCGCY 1 cut(s) 417
BglII AGATCT 1 cut(s) 499
BmcAI AGTACT 1 cut(s) 192
BmiI GGNNCC 3 cut(s) 39, 344, 415
BmsI GCATC 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 368
Bse8I GATNNNNATC 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 300
BseJI GATNNNNATC 1 cut(s) 36
BseMII CTCAG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 368
BseYI CCCAGC 1 cut(s) 509
BshNI GGYRCC 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 324
BslFI GGGAC 2 cut(s) 119, 436
BsmAI GTCTC 1 cut(s) 450
BsmFI GGGAC 2 cut(s) 119, 436
BsmI GAATGC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 3 cut(s) 37, 433, 499
BspACI CCGC 3 cut(s) 227, 248, 328
BspCNI CTCAG 1 cut(s) 207
BspLI GGNNCC 3 cut(s) 39, 344, 415
BspPI GGATC 2 cut(s) 32, 45
BspQI GCTCTTC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 413
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 3 cut(s) 37, 433, 499
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 26
Bst6I CTCTTC 2 cut(s) 201, 275
BstACI GRCGYC 1 cut(s) 414
BstDEI CTNAG 2 cut(s) 194, 386
BstF5I GGATG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 3 cut(s) 220, 392, 416
BstKTI GATC 3 cut(s) 40, 436, 502
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 3 cut(s) 37, 433, 499
BstMWI GCNNNNNNNGC 2 cut(s) 217, 224
BstX2I RGATCY 2 cut(s) 37, 499
BstYI RGATCY 2 cut(s) 37, 499
BtsCI GGATG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 190, 233
CfoI GCGC 3 cut(s) 220, 392, 416
CseI GACGC 1 cut(s) 497
Csp6I GTAC 2 cut(s) 191, 383
CviAII CATG 3 cut(s) 131, 149, 347
CviJI RGCY 8 cut(s) 57, 161, 211, 242, 266, 343, 398, 509
CviKI_1 RGCY 8 cut(s) 57, 161, 211, 242, 266, 343, 398, 509
CviQI GTAC 2 cut(s) 191, 383
DdeI CTNAG 2 cut(s) 194, 386
DinI GGCGCC 1 cut(s) 415
DpnI GATC 3 cut(s) 39, 435, 501
DpnII GATC 3 cut(s) 37, 433, 499
Eam1104I CTCTTC 2 cut(s) 201, 275
EarI CTCTTC 2 cut(s) 201, 275
Eco130I CCWWGG 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 26
EgeI GGCGCC 1 cut(s) 415
EheI GGCGCC 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 3 cut(s) 134, 152, 350
FaiI YATR 9 cut(s) 12, 132, 150, 279, 296, 348, 365, 438, 494
FaqI GGGAC 2 cut(s) 119, 436
FatI CATG 3 cut(s) 130, 148, 346
FbaI TGATCA 1 cut(s) 433
FokI GGATG 1 cut(s) 287
FspBI CTAG 1 cut(s) 526
GlaI GCGC 3 cut(s) 219, 391, 415
GsaI CCCAGC 1 cut(s) 513
HaeII RGCGCY 1 cut(s) 417
HgaI GACGC 1 cut(s) 497
HhaI GCGC 3 cut(s) 220, 392, 416
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 3 cut(s) 134, 152, 350
Hin6I GCGC 3 cut(s) 218, 390, 414
HinP1I GCGC 3 cut(s) 218, 390, 414
HinfI GANTC 1 cut(s) 201
HphI GGTGA 3 cut(s) 55, 133, 497
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 3 cut(s) 374, 421, 503
HpyAV CCTTC 2 cut(s) 121, 427
HpyCH4IV ACGT 1 cut(s) 378
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 224
HpyF3I CTNAG 2 cut(s) 194, 386
HpySE526I ACGT 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 3 cut(s) 134, 152, 350
HspAI GCGC 3 cut(s) 218, 390, 414
KasI GGCGCC 1 cut(s) 413
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 3 cut(s) 37, 433, 499
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 348
LpnPI CCDG 7 cut(s) 171, 193, 228, 259, 381, 444, 495
LweI GCATC 1 cut(s) 465
MaeI CTAG 1 cut(s) 526
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 5 cut(s) 151, 229, 358, 485, 517
MalI GATC 3 cut(s) 39, 435, 501
MboI GATC 3 cut(s) 37, 433, 499
MboII GAAGA 3 cut(s) 218, 262, 509
MflI RGATCY 2 cut(s) 37, 499
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 51, 337
Mly113I GGCGCC 1 cut(s) 414
MnlI CCTC 9 cut(s) 71, 76, 147, 231, 266, 316, 323, 404, 445
Mva1269I GAATGC 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 217, 224
NarI GGCGCC 1 cut(s) 414
NdeII GATC 3 cut(s) 37, 433, 499
NlaIII CATG 3 cut(s) 134, 152, 350
NlaIV GGNNCC 3 cut(s) 39, 344, 415
NmuCI GTSAC 1 cut(s) 485
PciSI GCTCTTC 1 cut(s) 201
PctI GAATGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 201
PluTI GGCGCC 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 509
PspN4I GGNNCC 3 cut(s) 39, 344, 415
PsuI RGATCY 2 cut(s) 37, 499
RsaI GTAC 2 cut(s) 192, 384
RsaNI GTAC 2 cut(s) 191, 383
SapI GCTCTTC 1 cut(s) 201
Sau3AI GATC 3 cut(s) 37, 433, 499
ScaI AGTACT 1 cut(s) 192
SduI GDGCHC 1 cut(s) 324
SfaNI GCATC 1 cut(s) 465
SfoI GGCGCC 1 cut(s) 415
Sse9I AATT 2 cut(s) 51, 337
SsiI CCGC 3 cut(s) 227, 248, 328
SspDI GGCGCC 1 cut(s) 413
SspMI CTAG 1 cut(s) 526
StyI CCWWGG 1 cut(s) 26
TaiI ACGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 68, 204
TasI AATT 2 cut(s) 51, 337
TatI WGTACW 2 cut(s) 190, 382
TfiI GAWTC 1 cut(s) 201
TscAI CASTG 2 cut(s) 190, 240
TseFI GTSAC 1 cut(s) 485
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 2 cut(s) 103, 456
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 2 cut(s) 190, 240
XspI CTAG 1 cut(s) 526
ZrmI AGTACT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.