RLG00000005938

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017671
Physical Location & Seq
Forward (+)
2928262 .. 2929115
854 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005938

Sequence Viewer

Length: 492 bp
ATGAACAAGAATAAACGCAATTATCTCCGCAACACAAACACAAATTATCTCTTAAACGATTCACATTTTAACAAGATCGACATTTCAAGATCAGAAAACCACACGAACCGATTCGACTCAGTCCTTATTCTTCTTCAATCGCTCTACGCTCTGGTTCAGCTGCTCGATCCGGACGACGAGGTGAGTGACGGTGTAGAGCAGCCAGTAGAAGATGAGCGCCGCGGCGATGAGAAGCGCGTTGCGCTGGCTCTTCATGATGGACTTCTGGTGGCGGAGGTGCTCGGACGGCGTGCAGGAGTCGCCGTCGCAGTTCGGCCGATTCTCGTACTTCCAGTAGATGTCCATGAGGAGGAAGAGGCAGAAGGGCACCACCGAGAGGAAGGGCTTGAGGAGGTTGCGCGTGACGGCCACGAGGCCCTTGCGGAGGCCGTCGAGGCCGGGGAGCGTGAGGAGAAGGACCATCACGGCCTCTGCGCCCGCGGCGTAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.27

Weight (kDa)

4.88

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20622
rosa_laevigata RLG00000003341 RLG00000005938
rosa_multiflora Rmu_sc0000821.1_g000001
rosa_rugosa Rorug07G0094300
rosa_samantha Rh3CG232200 Rh4AG415500 Rh6BG370700 Rh7AG226400 Rh7BG222400 Rh7CG240300 Rh7DG232500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 366
AccII CGCG 4 cut(s) 222, 237, 400, 480
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 7 cut(s) 28, 220, 222, 272, 422, 478, 480
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 2 cut(s) 314, 406
AfaI GTAC 1 cut(s) 327
AfiI CCNNNNNNNGG 3 cut(s) 349, 376, 424
AgsI TTSAA 2 cut(s) 87, 137
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 282
AlwI GGATC 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 6 cut(s) 314, 406, 414, 426, 435, 466
ApeKI GCWGC 2 cut(s) 160, 199
Asp700I GAANNNNTTC 1 cut(s) 110
AspLEI GCGC 5 cut(s) 219, 237, 244, 400, 476
AspS9I GGNCC 2 cut(s) 415, 457
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 1 cut(s) 193
AvaII GGWCC 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 369
BanI GGYRCC 1 cut(s) 366
BauI CACGAG 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 147, 211
BccI CCATC 2 cut(s) 251, 468
BceAI ACGGC 5 cut(s) 287, 302, 413, 421, 481
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BcnI CCSGG 1 cut(s) 439
BfaI CTAG 1 cut(s) 490
BfoI RGCGCY 1 cut(s) 220
BglI GCCNNNNNGGC 1 cut(s) 434
BisI GCNGC 5 cut(s) 161, 200, 220, 223, 481
BlsI GCNGC 5 cut(s) 162, 201, 221, 224, 482
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 1 cut(s) 457
BmgT120I GGNCC 2 cut(s) 415, 457
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 439
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 439
BsaJI CCNNGG 3 cut(s) 220, 438, 478
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 376, 424
Bse1I ACTGG 2 cut(s) 203, 332
BseAI TCCGGA 1 cut(s) 169
BseDI CCNNGG 3 cut(s) 220, 438, 478
BseLI CCNNNNNNNGG 3 cut(s) 349, 376, 424
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 203, 332
BseRI GAGGAG 3 cut(s) 362, 404, 464
BseSI GKGCMC 1 cut(s) 369
BseX3I CGGCCG 1 cut(s) 314
BseXI GCAGC 2 cut(s) 147, 211
BsgI GTGCAG 1 cut(s) 312
Bsh1236I CGCG 4 cut(s) 222, 237, 400, 480
Bsh1285I CGRYCG 1 cut(s) 317
BshFI GGCC 6 cut(s) 316, 408, 416, 428, 437, 468
BshNI GGYRCC 1 cut(s) 366
BsiEI CGRYCG 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 282
BsiSI CCGG 2 cut(s) 170, 438
BslI CCNNNNNNNGG 3 cut(s) 349, 376, 424
BsnI GGCC 6 cut(s) 316, 408, 416, 428, 437, 468
Bsp1286I GDGCHC 2 cut(s) 282, 369
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 3 cut(s) 75, 89, 166
BspACI CCGC 7 cut(s) 28, 220, 222, 272, 422, 478, 480
BspANI GGCC 6 cut(s) 316, 408, 416, 428, 437, 468
BspCNI CTCAG 1 cut(s) 131
BspEI TCCGGA 1 cut(s) 169
BspFNI CGCG 4 cut(s) 222, 237, 400, 480
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 368
BspPI GGATC 1 cut(s) 161
BspQI GCTCTTC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 366
BsrI ACTGG 2 cut(s) 203, 332
BssECI CCNNGG 3 cut(s) 220, 438, 478
BssMI GATC 3 cut(s) 75, 89, 166
BssSI CACGAG 1 cut(s) 410
Bst2BI CACGAG 1 cut(s) 410
Bst4CI ACNGT 1 cut(s) 191
Bst6I CTCTTC 2 cut(s) 255, 348
BstC8I GCNNGC 3 cut(s) 246, 291, 478
BstDEI CTNAG 1 cut(s) 118
BstDSI CCRYGG 2 cut(s) 220, 478
BstENI CCTNNNNNAGG 1 cut(s) 422
BstFNI CGCG 4 cut(s) 222, 237, 400, 480
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 5 cut(s) 219, 237, 244, 400, 476
BstKTI GATC 3 cut(s) 78, 92, 169
BstMBI GATC 3 cut(s) 75, 89, 166
BstMCI CGRYCG 1 cut(s) 317
BstMWI GCNNNNNNNGC 5 cut(s) 241, 286, 299, 434, 480
BstSCI CCNGG 1 cut(s) 437
BstSLI GKGCMC 1 cut(s) 369
BstUI CGCG 4 cut(s) 222, 237, 400, 480
BstV1I GCAGC 2 cut(s) 147, 211
BstZI CGGCCG 1 cut(s) 314
BsuRI GGCC 6 cut(s) 316, 408, 416, 428, 437, 468
BtgI CCRYGG 2 cut(s) 220, 478
BtgZI GCGATG 1 cut(s) 240
Cac8I GCNNGC 3 cut(s) 246, 291, 478
CciI TCATGA 1 cut(s) 253
CfoI GCGC 5 cut(s) 219, 237, 244, 400, 476
Cfr13I GGNCC 2 cut(s) 415, 457
Cfr42I CCGCGG 2 cut(s) 223, 481
Csp6I GTAC 1 cut(s) 326
CviAII CATG 2 cut(s) 254, 344
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 1 cut(s) 118
DpnI GATC 3 cut(s) 77, 91, 168
DpnII GATC 3 cut(s) 75, 89, 166
EaeI YGGCCR 2 cut(s) 314, 406
EagI CGGCCG 1 cut(s) 314
Eam1104I CTCTTC 2 cut(s) 255, 348
EarI CTCTTC 2 cut(s) 255, 348
EciI GGCGGA 1 cut(s) 287
EclXI CGGCCG 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 457
Eco52I CGGCCG 1 cut(s) 314
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 415
FaeI CATG 2 cut(s) 257, 347
FaiI YATR 2 cut(s) 255, 345
FatI CATG 2 cut(s) 253, 343
FauI CCCGC 1 cut(s) 485
Fnu4HI GCNGC 5 cut(s) 161, 200, 220, 223, 481
Fsp4HI GCNGC 5 cut(s) 161, 200, 220, 223, 481
FspBI CTAG 1 cut(s) 490
GlaI GCGC 5 cut(s) 218, 236, 243, 399, 475
GluI GCNGC 5 cut(s) 161, 200, 220, 223, 481
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 6 cut(s) 316, 408, 416, 428, 437, 468
HapII CCGG 2 cut(s) 170, 438
HhaI GCGC 5 cut(s) 219, 237, 244, 400, 476
Hin1II CATG 2 cut(s) 257, 347
Hin6I GCGC 5 cut(s) 217, 235, 242, 398, 474
HinP1I GCGC 5 cut(s) 217, 235, 242, 398, 474
HinfI GANTC 5 cut(s) 59, 111, 116, 297, 319
HpaII CCGG 2 cut(s) 170, 438
HphI GGTGA 1 cut(s) 193
Hpy188I TCNGA 2 cut(s) 94, 284
Hpy188III TCNNGA 3 cut(s) 87, 170, 254
Hpy99I CGWCG 3 cut(s) 179, 308, 434
HpyAV CCTTC 3 cut(s) 356, 374, 448
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 5 cut(s) 241, 286, 299, 434, 480
HpyF3I CTNAG 1 cut(s) 118
Hsp92II CATG 2 cut(s) 257, 347
HspAI GCGC 5 cut(s) 217, 235, 242, 398, 474
Kpn2I TCCGGA 1 cut(s) 169
KspI CCGCGG 2 cut(s) 223, 481
Kzo9I GATC 3 cut(s) 75, 89, 166
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 442
LpnPI CCDG 8 cut(s) 137, 183, 216, 230, 251, 279, 345, 451
Lsp1109I GCAGC 2 cut(s) 147, 211
MaeI CTAG 1 cut(s) 490
MaeIII GTNAC 2 cut(s) 185, 401
MalI GATC 3 cut(s) 77, 91, 168
MboI GATC 3 cut(s) 75, 89, 166
MboII GAAGA 5 cut(s) 122, 125, 221, 242, 365
MhlI GDGCHC 2 cut(s) 282, 369
MluCI AATT 2 cut(s) 19, 43
MlyI GAGTC 2 cut(s) 110, 306
MroI TCCGGA 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 2 cut(s) 53, 69
MspA1I CMGCKG 3 cut(s) 160, 222, 480
MspI CCGG 2 cut(s) 170, 438
MspR9I CCNGG 1 cut(s) 439
MvnI CGCG 4 cut(s) 222, 237, 400, 480
MwoI GCNNNNNNNGC 5 cut(s) 241, 286, 299, 434, 480
NciI CCSGG 1 cut(s) 439
NdeII GATC 3 cut(s) 75, 89, 166
NlaIII CATG 2 cut(s) 257, 347
NlaIV GGNNCC 1 cut(s) 368
NmuCI GTSAC 2 cut(s) 185, 401
PagI TCATGA 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 110
PfeI GAWTC 3 cut(s) 59, 111, 319
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 5 cut(s) 162, 201, 221, 224, 482
PleI GAGTC 2 cut(s) 110, 305
PpsI GAGTC 2 cut(s) 110, 305
PspN4I GGNNCC 1 cut(s) 368
PspPI GGNCC 2 cut(s) 415, 457
PsyI GACNNNGTC 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 160
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
SacII CCGCGG 2 cut(s) 223, 481
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 53, 69
SatI GCNGC 5 cut(s) 161, 200, 220, 223, 481
Sau3AI GATC 3 cut(s) 75, 89, 166
Sau96I GGNCC 2 cut(s) 415, 457
SchI GAGTC 2 cut(s) 110, 306
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 2 cut(s) 282, 369
SetI ASST 4 cut(s) 162, 183, 279, 396
SfiI GGCCNNNNNGGCC 1 cut(s) 434
Sfr303I CCGCGG 2 cut(s) 223, 481
SgrBI CCGCGG 2 cut(s) 223, 481
SinI GGWCC 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 2 cut(s) 19, 43
SsiI CCGC 7 cut(s) 28, 220, 222, 272, 422, 478, 480
SspMI CTAG 1 cut(s) 490
StyD4I CCNGG 1 cut(s) 437
TaaI ACNGT 1 cut(s) 191
TaqI TCGA 4 cut(s) 78, 114, 165, 432
TasI AATT 2 cut(s) 19, 43
TauI GCSGC 3 cut(s) 222, 225, 483
TfiI GAWTC 3 cut(s) 59, 111, 319
Tru1I TTAA 2 cut(s) 53, 69
Tru9I TTAA 2 cut(s) 53, 69
TseFI GTSAC 2 cut(s) 185, 401
TseI GCWGC 2 cut(s) 160, 199
Tsp45I GTSAC 2 cut(s) 185, 401
TspDTI ATGAA 2 cut(s) 17, 242
Tth111I GACNNNGTC 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 457
XagI CCTNNNNNAGG 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.