Rh3CG232200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017671
Physical Location & Seq
Forward (+)
21915260 .. 21917071
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG232200.1

Sequence Viewer

Length: 168 bp
ATGGAGCCATGGAAAGATTATCTCAGCAACAAGGAGGAAGAGGCAGAAGGCCACCACCAAGAGGAACGGCTTGAGGAGATTGCACGTGACGGCCACGAGGCCCTTGCAGAGGCCGTCGAGCATGAAGAGGAGGACCATCACGGCCTCTGCGCCGGCGGCGTAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

6.25

Weight (kDa)

4.48

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20622
rosa_laevigata RLG00000003341 RLG00000005938
rosa_multiflora Rmu_sc0000821.1_g000001
rosa_rugosa Rorug07G0094300
rosa_samantha Rh3CG232200 Rh4AG415500 Rh6BG370700 Rh7AG226400 Rh7BG222400 Rh7CG240300 Rh7DG232500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 156
AcoI YGGCCR 1 cut(s) 91
AcvI CACGTG 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 61, 109
AoxI GGCC 5 cut(s) 49, 91, 99, 111, 142
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 100, 133
AvaII GGWCC 1 cut(s) 133
BauI CACGAG 1 cut(s) 95
BbrPI CACGTG 1 cut(s) 86
BccI CCATC 1 cut(s) 144
BceAI ACGGC 4 cut(s) 83, 98, 106, 157
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BfaI CTAG 1 cut(s) 166
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 100, 133
BmiI GGNNCC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 92
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 109
Bse118I RCCGGY 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 61, 109
BseMII CTCAG 1 cut(s) 37
BseRI GAGGAG 2 cut(s) 89, 143
BshFI GGCC 5 cut(s) 51, 93, 101, 113, 144
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 61, 109
BsnI GGCC 5 cut(s) 51, 93, 101, 113, 144
Bsp19I CCATGG 1 cut(s) 8
BspACI CCGC 1 cut(s) 156
BspANI GGCC 5 cut(s) 51, 93, 101, 113, 144
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 8
BssSI CACGAG 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 8
Bst2BI CACGAG 1 cut(s) 95
Bst6I CTCTTC 2 cut(s) 33, 120
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 8
BstENI CCTNNNNNAGG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 156
BsuRI GGCC 5 cut(s) 51, 93, 101, 113, 144
BtgI CCRYGG 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 100, 133
CviAII CATG 2 cut(s) 9, 122
CviJI RGCY 8 cut(s) 7, 51, 70, 93, 101, 113, 144, 164
CviKI_1 RGCY 8 cut(s) 7, 51, 70, 93, 101, 113, 144, 164
DdeI CTNAG 1 cut(s) 23
EaeI YGGCCR 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 33, 120
EarI CTCTTC 2 cut(s) 33, 120
Eco130I CCWWGG 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 133
Eco72I CACGTG 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 2 cut(s) 12, 125
FaiI YATR 2 cut(s) 10, 123
FatI CATG 2 cut(s) 8, 121
Fnu4HI GCNGC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 166
GlaI GCGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 157
HaeIII GGCC 5 cut(s) 51, 93, 101, 113, 144
HapII CCGG 1 cut(s) 153
HhaI GCGC 1 cut(s) 152
Hin1II CATG 2 cut(s) 12, 125
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HpaII CCGG 1 cut(s) 153
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 83, 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 2 cut(s) 12, 125
HspAI GCGC 1 cut(s) 150
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 4
MaeI CTAG 1 cut(s) 166
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 86
MboII GAAGA 2 cut(s) 50, 137
MnlI CCTC 9 cut(s) 28, 34, 55, 67, 91, 103, 121, 124, 155
MreI CGCCGGCG 1 cut(s) 152
MroNI GCCGGC 1 cut(s) 152
MspI CCGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 156
NaeI GCCGGC 1 cut(s) 154
NcoI CCATGG 1 cut(s) 8
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 2 cut(s) 12, 125
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 86
PdiI GCCGGC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 158
PmaCI CACGTG 1 cut(s) 86
PmlI CACGTG 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 86
PspCI CACGTG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 100, 133
SatI GCNGC 1 cut(s) 157
Sau96I GGNCC 2 cut(s) 100, 133
SetI ASST 1 cut(s) 88
SgrAI CRCCGGYG 1 cut(s) 152
SinI GGWCC 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SsiI CCGC 1 cut(s) 156
SspMI CTAG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 8
TaiI ACGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 117
TauI GCSGC 1 cut(s) 159
TseFI GTSAC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 133
XagI CCTNNNNNAGG 1 cut(s) 107
XspI CTAG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.