Rmu_sc0000821.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000821.1
OG0017671
Physical Location & Seq
Forward (+)
1 .. 1342
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000821.1_g000001.1.cds

Sequence Viewer

Length: 195 bp
gagccatggaaagattatctcagcaacaaggaggaagaggcagaagggcaccaccaagaggaacggcttgaggagattgcacgtgacggccacgaggcccttgcagaggccgtcgagcatgaagaggaggaccatcacggcctctgcgccggcggcgtagcctacaccacccactctagagccatcaggatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.32

Weight (kDa)

4.77

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20622
rosa_laevigata RLG00000003341 RLG00000005938
rosa_multiflora Rmu_sc0000821.1_g000001
rosa_rugosa Rorug07G0094300
rosa_samantha Rh3CG232200 Rh4AG415500 Rh6BG370700 Rh7AG226400 Rh7BG222400 Rh7CG240300 Rh7DG232500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 48
AciI CCGC 1 cut(s) 153
AcoI YGGCCR 1 cut(s) 88
AcvI CACGTG 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 58, 106
AlwNI CAGNNNCTG 1 cut(s) 192
AoxI GGCC 4 cut(s) 88, 96, 108, 139
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 97, 130
AvaII GGWCC 1 cut(s) 130
BaeGI GKGCMC 1 cut(s) 51
BanI GGYRCC 1 cut(s) 48
BauI CACGAG 1 cut(s) 92
BbrPI CACGTG 1 cut(s) 83
BccI CCATC 2 cut(s) 141, 191
BceAI ACGGC 4 cut(s) 80, 95, 103, 154
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BfaI CTAG 1 cut(s) 177
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 97, 130
BmiI GGNNCC 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 106
Bse118I RCCGGY 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 5
BseLI CCNNNNNNNGG 2 cut(s) 58, 106
BseMII CTCAG 1 cut(s) 34
BseRI GAGGAG 2 cut(s) 86, 140
BseSI GKGCMC 1 cut(s) 51
BshFI GGCC 4 cut(s) 90, 98, 110, 141
BshNI GGYRCC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 58, 106
BsnI GGCC 4 cut(s) 90, 98, 110, 141
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 189
Bsp19I CCATGG 1 cut(s) 5
BspACI CCGC 1 cut(s) 153
BspANI GGCC 4 cut(s) 90, 98, 110, 141
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 5
Bst2BI CACGAG 1 cut(s) 92
Bst6I CTCTTC 2 cut(s) 30, 117
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 5
BstENI CCTNNNNNAGG 1 cut(s) 104
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BsuRI GGCC 4 cut(s) 90, 98, 110, 141
BtgI CCRYGG 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 192
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 97, 130
CviAII CATG 2 cut(s) 6, 119
CviJI RGCY 8 cut(s) 4, 67, 90, 98, 110, 141, 161, 182
CviKI_1 RGCY 8 cut(s) 4, 67, 90, 98, 110, 141, 161, 182
DdeI CTNAG 1 cut(s) 20
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 30, 117
EarI CTCTTC 2 cut(s) 30, 117
Eco130I CCWWGG 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 130
Eco72I CACGTG 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 5
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 2 cut(s) 9, 122
FaiI YATR 2 cut(s) 7, 120
FatI CATG 2 cut(s) 5, 118
Fnu4HI GCNGC 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 154
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 154
HaeIII GGCC 4 cut(s) 90, 98, 110, 141
HapII CCGG 1 cut(s) 150
HhaI GCGC 1 cut(s) 149
Hin1II CATG 2 cut(s) 9, 122
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HpaII CCGG 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 2 cut(s) 177, 187
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 80, 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 2 cut(s) 9, 122
HspAI GCGC 1 cut(s) 147
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 2 cut(s) 163, 172
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 2 cut(s) 47, 134
MflI RGATCY 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 51
MnlI CCTC 9 cut(s) 25, 31, 52, 64, 88, 100, 118, 121, 152
MreI CGCCGGCG 1 cut(s) 149
MroNI GCCGGC 1 cut(s) 149
MspI CCGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 153
NaeI GCCGGC 1 cut(s) 151
NcoI CCATGG 1 cut(s) 5
NdeII GATC 1 cut(s) 189
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 2 cut(s) 9, 122
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 83
PdiI GCCGGC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 155
PmaCI CACGTG 1 cut(s) 83
PmlI CACGTG 1 cut(s) 83
Ppu21I YACGTR 1 cut(s) 83
PspCI CACGTG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 2 cut(s) 97, 130
PstNI CAGNNNCTG 1 cut(s) 192
PsuI RGATCY 1 cut(s) 189
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 1 cut(s) 189
Sau96I GGNCC 2 cut(s) 97, 130
SduI GDGCHC 1 cut(s) 51
SetI ASST 1 cut(s) 85
SgrAI CRCCGGYG 1 cut(s) 149
SinI GGWCC 1 cut(s) 130
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SsiI CCGC 1 cut(s) 153
SspMI CTAG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 5
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 114
TauI GCSGC 1 cut(s) 156
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 130
XagI CCTNNNNNAGG 1 cut(s) 104
XbaI TCTAGA 1 cut(s) 176
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.