Rh4AG415500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017671
Physical Location & Seq
Reverse (-)
71392266 .. 71393287
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG415500.1

Sequence Viewer

Length: 219 bp
ATGTATATCTGGTATTCGTTCATGCACATTGTATACGGAAACAGGCACGTGCAAAAGCCATGGAAAGATTATCTCAGCAACAAGGAGGAAGAGGCAGAAGGGCACCACCGAGAGGAACGGCTTGAGGAGATTGCGCGTGACGGCCACGAGGCCCTTGCAGAGGCCGTCGAGCATGAAGAGGAGGACCATCACGGCCTCTGCGCCGGCGGCGTAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.47

Weight (kDa)

5.08

Isoelectric Point (pI)

58.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20622
rosa_laevigata RLG00000003341 RLG00000005938
rosa_multiflora Rmu_sc0000821.1_g000001
rosa_rugosa Rorug07G0094300
rosa_samantha Rh3CG232200 Rh4AG415500 Rh6BG370700 Rh7AG226400 Rh7BG222400 Rh7CG240300 Rh7DG232500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 102
AccI GTMKAC 1 cut(s) 33
AccII CGCG 1 cut(s) 136
AciI CCGC 1 cut(s) 207
AcoI YGGCCR 1 cut(s) 142
AcvI CACGTG 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 112, 160
AoxI GGCC 4 cut(s) 142, 150, 162, 193
AspLEI GCGC 2 cut(s) 136, 203
AspS9I GGNCC 2 cut(s) 151, 184
AvaII GGWCC 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 102
BauI CACGAG 1 cut(s) 146
BbrPI CACGTG 1 cut(s) 49
BccI CCATC 1 cut(s) 195
BceAI ACGGC 4 cut(s) 134, 149, 157, 208
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BfaI CTAG 1 cut(s) 217
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 151, 184
BmiI GGNNCC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 143
BsaAI YACGTR 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 160
Bse118I RCCGGY 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 59
BseLI CCNNNNNNNGG 2 cut(s) 112, 160
BseMII CTCAG 1 cut(s) 88
BseRI GAGGAG 2 cut(s) 140, 194
BseSI GKGCMC 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 136
BshFI GGCC 4 cut(s) 144, 152, 164, 195
BshNI GGYRCC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 112, 160
BsnI GGCC 4 cut(s) 144, 152, 164, 195
Bsp1286I GDGCHC 1 cut(s) 105
Bsp19I CCATGG 1 cut(s) 59
BspACI CCGC 1 cut(s) 207
BspANI GGCC 4 cut(s) 144, 152, 164, 195
BspCNI CTCAG 1 cut(s) 87
BspFNI CGCG 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 59
BssNAI GTATAC 1 cut(s) 34
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 59
Bst1107I GTATAC 1 cut(s) 34
Bst2BI CACGAG 1 cut(s) 146
Bst6I CTCTTC 2 cut(s) 84, 171
BstBAI YACGTR 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 59
BstENI CCTNNNNNAGG 1 cut(s) 158
BstFNI CGCG 1 cut(s) 136
BstHHI GCGC 2 cut(s) 136, 203
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 1 cut(s) 136
BstZ17I GTATAC 1 cut(s) 34
BsuRI GGCC 4 cut(s) 144, 152, 164, 195
BtgI CCRYGG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 205
CfoI GCGC 2 cut(s) 136, 203
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 151, 184
CviAII CATG 3 cut(s) 22, 60, 173
CviJI RGCY 7 cut(s) 58, 121, 144, 152, 164, 195, 215
CviKI_1 RGCY 7 cut(s) 58, 121, 144, 152, 164, 195, 215
DdeI CTNAG 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 84, 171
EarI CTCTTC 2 cut(s) 84, 171
Eco130I CCWWGG 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 184
Eco72I CACGTG 1 cut(s) 49
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 3 cut(s) 25, 63, 176
FaiI YATR 5 cut(s) 6, 23, 34, 61, 174
FatI CATG 3 cut(s) 21, 59, 172
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 208
FspBI CTAG 1 cut(s) 217
GlaI GCGC 2 cut(s) 135, 202
GluI GCNGC 1 cut(s) 208
HaeIII GGCC 4 cut(s) 144, 152, 164, 195
HapII CCGG 1 cut(s) 204
HhaI GCGC 2 cut(s) 136, 203
Hin1II CATG 3 cut(s) 25, 63, 176
Hin6I GCGC 2 cut(s) 134, 201
HinP1I GCGC 2 cut(s) 134, 201
HpaII CCGG 1 cut(s) 204
Hpy166II GTNNAC 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 3 cut(s) 25, 52, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 3 cut(s) 25, 63, 176
HspAI GCGC 2 cut(s) 134, 201
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
LpnPI CCDG 1 cut(s) 28
MaeI CTAG 1 cut(s) 217
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 137
MboII GAAGA 2 cut(s) 101, 188
MhlI GDGCHC 1 cut(s) 105
MnlI CCTC 9 cut(s) 79, 85, 106, 118, 142, 154, 172, 175, 206
MreI CGCCGGCG 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 203
MspI CCGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 207
NaeI GCCGGC 1 cut(s) 205
NcoI CCATGG 1 cut(s) 59
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 3 cut(s) 25, 63, 176
NlaIV GGNNCC 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 137
PdiI GCCGGC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 209
PmaCI CACGTG 1 cut(s) 49
PmlI CACGTG 1 cut(s) 49
Ppu21I YACGTR 1 cut(s) 49
PspCI CACGTG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 2 cut(s) 151, 184
SatI GCNGC 1 cut(s) 208
Sau96I GGNCC 2 cut(s) 151, 184
SduI GDGCHC 1 cut(s) 105
SetI ASST 1 cut(s) 51
SgrAI CRCCGGYG 1 cut(s) 203
SinI GGWCC 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SsiI CCGC 1 cut(s) 207
SspMI CTAG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 59
TaiI ACGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 168
TauI GCSGC 1 cut(s) 210
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 10, 189
TspGWI ACGGA 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 184
XagI CCTNNNNNAGG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.