Rh7BG222400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017671
Physical Location & Seq
Reverse (-)
19131660 .. 19132208
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG222400.1

Sequence Viewer

Length: 549 bp
ATGTACATCGATATTAGGCATGCGATTCTCCTAGCAATCAACATTTTGAAATATGGAGTAGGAATGTCATGGGATTGGGATCCTTACAATACAATCAGCAACCTCACCTGGATAAAAGCAATTGTTCATATCATTCTCTTTGTGGTCTTTCCCTTCATCTCCATCAAAGTCCATGTCCCTCTAACCACTCATGCCATTACTAGGACTACCAGCACCGGAGTACTCAAACAACTAGAAGAGCTTTCTGCACCTCTCGCGGTTACACTGGTGGCTGCTGTGCTTATCCTCCCACAAGCTATCTTCTGGTATGCCTACCTCATTATAATTCTCATCCCCTCTTGCCTCTGTGTGCTCAACCGCTTTGCGAATTGGCTCCATATTGTCCTTATTACTATACCAGTTCTTAACGTTGTACTAAGGGCAACCACTCTTCGTTGGCAAGGTGCCGTTGGGCCTGAACCTGATCATAATGAAGCAAGTGCGGGAGACACACAAGGGGTGGAGATGCGATTAGGTGAAGATCCTGAAGCTGGCAGAGTACCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.24

Weight (kDa)

6.27

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20622
rosa_laevigata RLG00000003341 RLG00000005938
rosa_multiflora Rmu_sc0000821.1_g000001
rosa_rugosa Rorug07G0094300
rosa_samantha Rh3CG232200 Rh4AG415500 Rh6BG370700 Rh7AG226400 Rh7BG222400 Rh7CG240300 Rh7DG232500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 443
AccII CGCG 1 cut(s) 257
AciI CCGC 3 cut(s) 257, 358, 482
AclI AACGTT 1 cut(s) 408
AclWI GGATC 3 cut(s) 74, 87, 515
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 4 cut(s) 5, 222, 414, 540
AfiI CCNNNNNNNGG 2 cut(s) 201, 530
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 3 cut(s) 241, 296, 530
AluI AGCT 3 cut(s) 241, 296, 530
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 480
AlwI GGATC 3 cut(s) 74, 87, 515
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 1 cut(s) 272
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 97, 527
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 431
BciT130I CCWGG 1 cut(s) 109
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 1 cut(s) 480
BfaI CTAG 4 cut(s) 32, 201, 233, 547
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmcAI AGTACT 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 3 cut(s) 81, 374, 445
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 495
Bsa29I ATCGAT 1 cut(s) 9
BsaBI GATNNNNATC 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 215
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 530
Bse1I ACTGG 3 cut(s) 270, 398, 542
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 1 cut(s) 109
BseCI ATCGAT 1 cut(s) 9
BseGI GGATG 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 201, 530
BseNI ACTGG 3 cut(s) 270, 398, 542
BseXI GCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 1 cut(s) 454
BshNI GGYRCC 1 cut(s) 443
BshVI ATCGAT 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 201, 530
BsmAI GTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 354
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 79, 463, 520
BspACI CCGC 3 cut(s) 257, 358, 482
BspANI GGCC 1 cut(s) 454
BspDI ATCGAT 1 cut(s) 9
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 3 cut(s) 81, 374, 445
BspPI GGATC 3 cut(s) 74, 87, 515
BspQI GCTCTTC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 443
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 3 cut(s) 270, 398, 542
BssMI GATC 3 cut(s) 79, 463, 520
Bst2UI CCWGG 1 cut(s) 109
Bst6I CTCTTC 2 cut(s) 231, 435
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 21, 532
BstDEI CTNAG 1 cut(s) 416
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 1 cut(s) 257
BstKTI GATC 3 cut(s) 82, 466, 523
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 3 cut(s) 79, 463, 520
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 107
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 259
BstX2I RGATCY 2 cut(s) 79, 520
BstYI RGATCY 2 cut(s) 79, 520
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 1 cut(s) 454
BsuTUI ATCGAT 1 cut(s) 9
BtsCI GGATG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 21, 532
Cfr13I GGNCC 1 cut(s) 452
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 4 cut(s) 4, 221, 413, 539
CviAII CATG 4 cut(s) 20, 69, 173, 191
CviJI RGCY 6 cut(s) 241, 272, 296, 373, 454, 530
CviKI_1 RGCY 6 cut(s) 241, 272, 296, 373, 454, 530
CviQI GTAC 4 cut(s) 4, 221, 413, 539
DdeI CTNAG 1 cut(s) 416
DpnI GATC 3 cut(s) 81, 465, 522
DpnII GATC 3 cut(s) 79, 463, 520
Eam1104I CTCTTC 2 cut(s) 231, 435
EarI CTCTTC 2 cut(s) 231, 435
Eco57I CTGAAG 1 cut(s) 546
EcoRII CCWGG 1 cut(s) 107
FaeI CATG 4 cut(s) 23, 72, 176, 194
FaqI GGGAC 1 cut(s) 161
FatI CATG 4 cut(s) 19, 68, 172, 190
FauI CCCGC 1 cut(s) 475
FbaI TGATCA 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 4 cut(s) 32, 201, 233, 547
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 1 cut(s) 454
HapII CCGG 1 cut(s) 216
Hin1II CATG 4 cut(s) 23, 72, 176, 194
HinfI GANTC 1 cut(s) 25
HpaII CCGG 1 cut(s) 216
HphI GGTGA 2 cut(s) 97, 527
Hpy188III TCNNGA 1 cut(s) 524
HpyAV CCTTC 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 416
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 4 cut(s) 23, 72, 176, 194
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 3 cut(s) 79, 463, 520
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 1 cut(s) 378
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 495
MaeI CTAG 4 cut(s) 32, 201, 233, 547
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 259
MalI GATC 3 cut(s) 81, 465, 522
MboI GATC 3 cut(s) 79, 463, 520
MboII GAAGA 4 cut(s) 248, 292, 422, 530
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 2 cut(s) 79, 520
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 3 cut(s) 120, 324, 367
MnlI CCTC 7 cut(s) 113, 189, 261, 296, 326, 346, 353
MseI TTAA 1 cut(s) 405
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 109
MunI CAATTG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 3 cut(s) 79, 463, 520
NlaIII CATG 4 cut(s) 23, 72, 176, 194
NlaIV GGNNCC 3 cut(s) 81, 374, 445
NspI RCATGY 1 cut(s) 23
PaeI GCATGC 1 cut(s) 23
PciSI GCTCTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 274
PsiI TTATAA 1 cut(s) 323
Psp1406I AACGTT 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 3 cut(s) 81, 374, 445
PspPI GGNCC 1 cut(s) 452
PsuI RGATCY 2 cut(s) 79, 520
RsaI GTAC 4 cut(s) 5, 222, 414, 540
RsaNI GTAC 4 cut(s) 4, 221, 413, 539
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 3 cut(s) 79, 463, 520
Sau96I GGNCC 1 cut(s) 452
ScaI AGTACT 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 354
SfaNI GCATC 1 cut(s) 495
SphI GCATGC 1 cut(s) 23
Sse9I AATT 3 cut(s) 120, 324, 367
SsiI CCGC 3 cut(s) 257, 358, 482
SspMI CTAG 4 cut(s) 32, 201, 233, 547
StyD4I CCNGG 1 cut(s) 107
TaiI ACGT 1 cut(s) 411
TaqI TCGA 1 cut(s) 9
TasI AATT 3 cut(s) 120, 324, 367
TatI WGTACW 3 cut(s) 3, 220, 412
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 270
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 3 cut(s) 116, 145, 486
TspRI CASTG 1 cut(s) 270
XceI RCATGY 1 cut(s) 23
XspI CTAG 4 cut(s) 32, 201, 233, 547
ZrmI AGTACT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.