RLG00000003341

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017671
Physical Location & Seq
Forward (+)
47401235 .. 47401804
570 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003341

Sequence Viewer

Length: 456 bp
ATGTATATCGATATTAGGCATGCAATTCTCCTAGCAGTCAACATGTTAAAATATGGAGTAGGAATGCCATGGGATTGGGATCCTTTCCATACAATTAGCAACCTCACCTGGATAAAAGCATTTTTTCATGTCATTCTCTTGGTGATCTTTCCCTTCATCTCCATCAAAGTCCATGTCCCTCTCACCATTCATTTAGCACCGACTTCCAGTACTAGTACTACCAGCACCATAGTACTCAAACGAATTGAAGAGCTATCTGCGCCTCTCGCGGTTACACTGGTGGTTGCCGCGCTTGTCCTTCCACAAGCTCTCTTCTGGGCAACCACTGTTCGTTGGCAAGGCGCCTTTGGGCCTGAACCTGATCATAATGAAGCGAGTGAGGGAGACACACAAGGAGTGGAGATGCCATTAGGTGATGCTATGGAAGATCCTGAAGCTGGGAGAGTACCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.67

Weight (kDa)

5.17

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20622
rosa_laevigata RLG00000003341 RLG00000005938
rosa_multiflora Rmu_sc0000821.1_g000001
rosa_rugosa Rorug07G0094300
rosa_samantha Rh3CG232200 Rh4AG415500 Rh6BG370700 Rh7AG226400 Rh7BG222400 Rh7CG240300 Rh7DG232500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 341
AccII CGCG 2 cut(s) 269, 290
AciI CCGC 2 cut(s) 269, 288
AclWI GGATC 3 cut(s) 74, 87, 422
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 342
AfaI GTAC 4 cut(s) 211, 217, 234, 447
AfiI CCNNNNNNNGG 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 1 cut(s) 248
AhlI ACTAGT 1 cut(s) 212
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 3 cut(s) 253, 308, 437
AluI AGCT 3 cut(s) 253, 308, 437
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 3 cut(s) 74, 87, 422
AoxI GGCC 1 cut(s) 350
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AspLEI GCGC 3 cut(s) 262, 292, 344
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 4 cut(s) 97, 154, 175, 425
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 341
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 109
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 378
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 3 cut(s) 32, 213, 454
BfoI RGCGCY 1 cut(s) 345
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BmcAI AGTACT 3 cut(s) 211, 217, 234
Bme1390I CCNGG 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 81, 343
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 393, 406
Bsa29I ATCGAT 1 cut(s) 9
BsaBI GATNNNNATC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse1I ACTGG 3 cut(s) 207, 282, 449
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 1 cut(s) 109
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 437
BseNI ACTGG 3 cut(s) 207, 282, 449
BseYI CCCAGC 1 cut(s) 437
Bsh1236I CGCG 2 cut(s) 269, 290
BshFI GGCC 1 cut(s) 352
BshNI GGYRCC 1 cut(s) 341
BshVI ATCGAT 1 cut(s) 9
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 69
BsnI GGCC 1 cut(s) 352
Bsp143I GATC 4 cut(s) 79, 144, 361, 427
Bsp19I CCATGG 1 cut(s) 68
BspACI CCGC 2 cut(s) 269, 288
BspANI GGCC 1 cut(s) 352
BspDI ATCGAT 1 cut(s) 9
BspFNI CGCG 2 cut(s) 269, 290
BspLI GGNNCC 2 cut(s) 81, 343
BspPI GGATC 3 cut(s) 74, 87, 422
BspQI GCTCTTC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 341
BsrI ACTGG 3 cut(s) 207, 282, 449
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 4 cut(s) 79, 144, 361, 427
BssNI GRCGYC 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 2 cut(s) 243, 317
BstACI GRCGYC 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 68
BstFNI CGCG 2 cut(s) 269, 290
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 3 cut(s) 262, 292, 344
BstKTI GATC 4 cut(s) 82, 147, 364, 430
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 4 cut(s) 79, 144, 361, 427
BstMWI GCNNNNNNNGC 2 cut(s) 259, 266
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 2 cut(s) 23, 46
BstSCI CCNGG 1 cut(s) 107
BstUI CGCG 2 cut(s) 269, 290
BstX2I RGATCY 2 cut(s) 79, 427
BstXI CCANNNNNNTGG 1 cut(s) 75
BstYI RGATCY 2 cut(s) 79, 427
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 1 cut(s) 352
BsuTUI ATCGAT 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 68
BtsIMutI CAGTG 2 cut(s) 275, 324
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 3 cut(s) 262, 292, 344
Cfr13I GGNCC 1 cut(s) 350
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 4 cut(s) 210, 216, 233, 446
CviAII CATG 5 cut(s) 20, 43, 69, 128, 173
CviJI RGCY 4 cut(s) 253, 308, 352, 437
CviKI_1 RGCY 4 cut(s) 253, 308, 352, 437
CviQI GTAC 4 cut(s) 210, 216, 233, 446
DinI GGCGCC 1 cut(s) 343
DpnI GATC 4 cut(s) 81, 146, 363, 429
DpnII GATC 4 cut(s) 79, 144, 361, 427
Eam1104I CTCTTC 2 cut(s) 243, 317
EarI CTCTTC 2 cut(s) 243, 317
Eco130I CCWWGG 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 68
EgeI GGCGCC 1 cut(s) 343
EheI GGCGCC 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 5 cut(s) 23, 46, 72, 131, 176
FaqI GGGAC 1 cut(s) 161
FatI CATG 5 cut(s) 19, 42, 68, 127, 172
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 3 cut(s) 32, 213, 454
GlaI GCGC 3 cut(s) 261, 291, 343
GluI GCNGC 1 cut(s) 288
GsaI CCCAGC 1 cut(s) 441
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 1 cut(s) 352
HhaI GCGC 3 cut(s) 262, 292, 344
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 5 cut(s) 23, 46, 72, 131, 176
Hin6I GCGC 3 cut(s) 260, 290, 342
HinP1I GCGC 3 cut(s) 260, 290, 342
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HphI GGTGA 4 cut(s) 97, 154, 175, 425
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 163, 308
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 2 cut(s) 259, 266
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 5 cut(s) 23, 46, 72, 131, 176
HspAI GCGC 3 cut(s) 260, 290, 342
KasI GGCGCC 1 cut(s) 341
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 4 cut(s) 79, 144, 361, 427
LguI GCTCTTC 1 cut(s) 243
LweI GCATC 2 cut(s) 393, 406
MaeI CTAG 3 cut(s) 32, 213, 454
MaeIII GTNAC 1 cut(s) 271
MalI GATC 4 cut(s) 81, 146, 363, 429
MboI GATC 4 cut(s) 79, 144, 361, 427
MboII GAAGA 3 cut(s) 260, 304, 437
MflI RGATCY 2 cut(s) 79, 427
MluCI AATT 3 cut(s) 24, 93, 243
Mly113I GGCGCC 1 cut(s) 342
MnlI CCTC 4 cut(s) 113, 189, 273, 373
MseI TTAA 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 109
Mva1269I GAATGC 1 cut(s) 69
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 2 cut(s) 269, 290
MwoI GCNNNNNNNGC 2 cut(s) 259, 266
NarI GGCGCC 1 cut(s) 342
NcoI CCATGG 1 cut(s) 68
NdeII GATC 4 cut(s) 79, 144, 361, 427
NlaIII CATG 5 cut(s) 23, 46, 72, 131, 176
NlaIV GGNNCC 2 cut(s) 81, 343
NspI RCATGY 2 cut(s) 23, 46
PaeI GCATGC 1 cut(s) 23
PciI ACATGT 1 cut(s) 42
PciSI GCTCTTC 1 cut(s) 243
PctI GAATGC 1 cut(s) 69
PkrI GCNGC 1 cut(s) 289
PluTI GGCGCC 1 cut(s) 345
PscI ACATGT 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 81, 343
PspPI GGNCC 1 cut(s) 350
PsuI RGATCY 2 cut(s) 79, 427
RsaI GTAC 4 cut(s) 211, 217, 234, 447
RsaNI GTAC 4 cut(s) 210, 216, 233, 446
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 4 cut(s) 79, 144, 361, 427
Sau96I GGNCC 1 cut(s) 350
ScaI AGTACT 3 cut(s) 211, 217, 234
ScrFI CCNGG 1 cut(s) 109
SetI ASST 7 cut(s) 105, 110, 255, 310, 361, 415, 439
SfaNI GCATC 2 cut(s) 393, 406
SfoI GGCGCC 1 cut(s) 343
SpeI ACTAGT 1 cut(s) 212
SphI GCATGC 1 cut(s) 23
Sse9I AATT 3 cut(s) 24, 93, 243
SsiI CCGC 2 cut(s) 269, 288
SspDI GGCGCC 1 cut(s) 341
SspMI CTAG 3 cut(s) 32, 213, 454
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 9
TasI AATT 3 cut(s) 24, 93, 243
TatI WGTACW 3 cut(s) 209, 215, 232
TauI GCSGC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 2 cut(s) 282, 331
TspDTI ATGAA 4 cut(s) 116, 145, 179, 384
TspRI CASTG 2 cut(s) 282, 331
XceI RCATGY 2 cut(s) 23, 46
XspI CTAG 3 cut(s) 32, 213, 454
ZrmI AGTACT 3 cut(s) 211, 217, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.