Rh7CG240300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0017671
Physical Location & Seq
Reverse (-)
22422891 .. 22428423
5533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG240300.1

Sequence Viewer

Length: 780 bp
ATGTACATCGATATTAGGCATGCGATTCTCCTAGCAATCAACATTTTGAAATATGGAGTAGGAATGTCATGGGATTGGGATCCTTACAATACAATCAGCAACCTCACCTGGATAAAAGCAATTGTTCATATCATTCTCTTTGTGGTCTTTCCCTTCATCTCCATCAAAGTCCATGTCCCTCTAACCACTCATGCCATTACTAGGACTACCAGCACCGGAGTACTCAAACAACTTGAAGAGCTTTCTGCACCTCTCGCGGTTACACTGGTGGCTGCTGTGCTTATCCTCCCACAAGCTATCTTCTGGTATGCCTACCTCATTATAATTCTCATTCCCTCTTGCCTCTGTGTGCTCAACCGCTTTGCGAATTGGCTCCATATTGTCCTTATTACCATACCAGTTCTTAACGTTGTACTAAGGGCAACCACTCTTCGTTGGCAAGGCGCCGTTGGGCCTGAACCTGATCATAATGAAGCAAGTACGGGAGACACACAAGGGGTGGAGATGCGATTAGGTGAAGATCATGAAGCTGGCAGAGAGCCATGGAAAGATTATCTCAGCAACAAGGAGGAAGAGGCAGAAGGGCACCACCAAGAGGAACGGCTTGAGGAGATTGCACGTGACGGCCACGAGGCCCTTGCAGAGGCCGTCGAGCATGAAGAGGAGGACCATCACGGCCTCTGCACCGGCGGCAAGGAGATTTCGATTCTCTCTGAGACTGGTGATGATGGAGATGCCGAGGACCCAGATGTGGAGAATAAGGTCGACGAAAGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.09

Weight (kDa)

4.79

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20622
rosa_laevigata RLG00000003341 RLG00000005938
rosa_multiflora Rmu_sc0000821.1_g000001
rosa_rugosa Rorug07G0094300
rosa_samantha Rh3CG232200 Rh4AG415500 Rh6BG370700 Rh7AG226400 Rh7BG222400 Rh7CG240300 Rh7DG232500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 323
AccB1I GGYRCC 2 cut(s) 443, 585
AccI GTMKAC 1 cut(s) 765
AccII CGCG 1 cut(s) 257
AciI CCGC 3 cut(s) 257, 358, 690
AclI AACGTT 1 cut(s) 408
AclWI GGATC 2 cut(s) 74, 87
AcoI YGGCCR 1 cut(s) 625
AcvI CACGTG 1 cut(s) 620
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 4 cut(s) 5, 222, 414, 481
AfiI CCNNNNNNNGG 4 cut(s) 201, 595, 643, 751
AgsI TTSAA 2 cut(s) 49, 236
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 3 cut(s) 241, 296, 530
AluI AGCT 3 cut(s) 241, 296, 530
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 2 cut(s) 480, 710
AlwI GGATC 2 cut(s) 74, 87
AoxI GGCC 5 cut(s) 452, 625, 633, 645, 676
ApeKI GCWGC 1 cut(s) 272
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AspLEI GCGC 1 cut(s) 446
AspS9I GGNCC 4 cut(s) 452, 634, 667, 742
AsuHPI GGTGA 3 cut(s) 97, 527, 734
AvaII GGWCC 2 cut(s) 667, 742
BaeGI GKGCMC 1 cut(s) 588
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 2 cut(s) 443, 585
BauI CACGAG 1 cut(s) 629
BbrPI CACGTG 1 cut(s) 620
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 259
BccI CCATC 3 cut(s) 170, 678, 722
BceAI ACGGC 5 cut(s) 431, 617, 632, 640, 691
BcgI CGANNNNNNTGC 2 cut(s) 620, 654
BciT130I CCWGG 1 cut(s) 109
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 2 cut(s) 480, 710
BfaI CTAG 2 cut(s) 32, 201
BfoI RGCGCY 1 cut(s) 447
BisI GCNGC 2 cut(s) 273, 691
BlsI GCNGC 2 cut(s) 274, 692
BmcAI AGTACT 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 2 cut(s) 667, 742
BmgT120I GGNCC 4 cut(s) 452, 634, 667, 742
BmiI GGNNCC 5 cut(s) 81, 374, 445, 587, 744
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 495, 724
BpuEI CTTGAG 1 cut(s) 626
Bsa29I ATCGAT 1 cut(s) 9
BsaAI YACGTR 1 cut(s) 620
BsaBI GATNNNNATC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 542, 738
BsaWI WCCGGW 1 cut(s) 215
Bsc4I CCNNNNNNNGG 4 cut(s) 201, 595, 643, 751
Bse118I RCCGGY 1 cut(s) 686
Bse1I ACTGG 3 cut(s) 270, 398, 724
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 1 cut(s) 109
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 542, 738
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 4 cut(s) 201, 595, 643, 751
BseMII CTCAG 2 cut(s) 571, 705
BseNI ACTGG 3 cut(s) 270, 398, 724
BseRI GAGGAG 2 cut(s) 623, 677
BseSI GKGCMC 1 cut(s) 588
BseXI GCAGC 1 cut(s) 259
BsgI GTGCAG 2 cut(s) 231, 667
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 5 cut(s) 454, 627, 635, 647, 678
BshNI GGYRCC 2 cut(s) 443, 585
BshVI ATCGAT 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 2 cut(s) 216, 687
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 4 cut(s) 201, 595, 643, 751
BsmAI GTCTC 2 cut(s) 480, 710
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 5 cut(s) 454, 627, 635, 647, 678
Bsp1286I GDGCHC 2 cut(s) 354, 588
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 79, 463, 520
Bsp19I CCATGG 1 cut(s) 542
BspACI CCGC 3 cut(s) 257, 358, 690
BspANI GGCC 5 cut(s) 454, 627, 635, 647, 678
BspCNI CTCAG 2 cut(s) 570, 706
BspDI ATCGAT 1 cut(s) 9
BspFNI CGCG 1 cut(s) 257
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 5 cut(s) 81, 374, 445, 587, 744
BspPI GGATC 2 cut(s) 74, 87
BspQI GCTCTTC 1 cut(s) 231
BspT107I GGYRCC 2 cut(s) 443, 585
BsrFI RCCGGY 1 cut(s) 686
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 3 cut(s) 270, 398, 724
BssAI RCCGGY 1 cut(s) 686
BssECI CCNNGG 2 cut(s) 542, 738
BssMI GATC 3 cut(s) 79, 463, 520
BssNI GRCGYC 1 cut(s) 444
BssSI CACGAG 1 cut(s) 629
BssT1I CCWWGG 1 cut(s) 542
Bst2BI CACGAG 1 cut(s) 629
Bst2UI CCWGG 1 cut(s) 109
Bst6I CTCTTC 4 cut(s) 231, 435, 567, 654
BstACI GRCGYC 1 cut(s) 444
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 620
BstC8I GCNNGC 2 cut(s) 21, 532
BstDEI CTNAG 3 cut(s) 416, 557, 714
BstDSI CCRYGG 1 cut(s) 542
BstENI CCTNNNNNAGG 1 cut(s) 641
BstFNI CGCG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 1 cut(s) 446
BstKTI GATC 3 cut(s) 82, 466, 523
BstMAI GTCTC 2 cut(s) 480, 710
BstMBI GATC 3 cut(s) 79, 463, 520
BstMWI GCNNNNNNNGC 2 cut(s) 254, 690
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 588
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 5 cut(s) 454, 627, 635, 647, 678
BsuTUI ATCGAT 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 542
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 21, 532
CciI TCATGA 1 cut(s) 523
CfoI GCGC 1 cut(s) 446
Cfr10I RCCGGY 1 cut(s) 686
Cfr13I GGNCC 4 cut(s) 452, 634, 667, 742
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 4 cut(s) 4, 221, 413, 480
CviAII CATG 7 cut(s) 20, 69, 173, 191, 524, 543, 656
CviQI GTAC 4 cut(s) 4, 221, 413, 480
DdeI CTNAG 3 cut(s) 416, 557, 714
DinI GGCGCC 1 cut(s) 445
DpnI GATC 3 cut(s) 81, 465, 522
DpnII GATC 3 cut(s) 79, 463, 520
EaeI YGGCCR 1 cut(s) 625
Eam1104I CTCTTC 4 cut(s) 231, 435, 567, 654
EarI CTCTTC 4 cut(s) 231, 435, 567, 654
Eco130I CCWWGG 1 cut(s) 542
Eco47I GGWCC 2 cut(s) 667, 742
Eco72I CACGTG 1 cut(s) 620
EcoNI CCTNNNNNAGG 1 cut(s) 641
EcoO109I RGGNCCY 2 cut(s) 634, 742
EcoRII CCWGG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 542
EgeI GGCGCC 1 cut(s) 445
EheI GGCGCC 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 542
FaeI CATG 7 cut(s) 23, 72, 176, 194, 527, 546, 659
FaqI GGGAC 1 cut(s) 161
FatI CATG 7 cut(s) 19, 68, 172, 190, 523, 542, 655
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 765
Fnu4HI GCNGC 2 cut(s) 273, 691
Fsp4HI GCNGC 2 cut(s) 273, 691
FspBI CTAG 2 cut(s) 32, 201
GlaI GCGC 1 cut(s) 445
GluI GCNGC 2 cut(s) 273, 691
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 5 cut(s) 454, 627, 635, 647, 678
HapII CCGG 2 cut(s) 216, 687
HhaI GCGC 1 cut(s) 446
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 7 cut(s) 23, 72, 176, 194, 527, 546, 659
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HinfI GANTC 2 cut(s) 25, 706
HpaII CCGG 2 cut(s) 216, 687
HphI GGTGA 3 cut(s) 97, 527, 734
Hpy166II GTNNAC 1 cut(s) 766
Hpy188I TCNGA 1 cut(s) 715
Hpy188III TCNNGA 1 cut(s) 524
Hpy8I GTNNAC 1 cut(s) 766
Hpy99I CGWCG 2 cut(s) 653, 770
HpyAV CCTTC 3 cut(s) 163, 575, 768
HpyCH4IV ACGT 2 cut(s) 408, 619
HpyCH4V TGCA 4 cut(s) 248, 617, 641, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 690
HpyF3I CTNAG 3 cut(s) 416, 557, 714
HpySE526I ACGT 2 cut(s) 408, 619
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 7 cut(s) 23, 72, 176, 194, 527, 546, 659
HspAI GCGC 1 cut(s) 444
KasI GGCGCC 1 cut(s) 443
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 3 cut(s) 79, 463, 520
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 1 cut(s) 378
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 2 cut(s) 495, 724
MaeI CTAG 2 cut(s) 32, 201
MaeII ACGT 2 cut(s) 408, 619
MaeIII GTNAC 2 cut(s) 259, 620
MalI GATC 3 cut(s) 81, 465, 522
MboI GATC 3 cut(s) 79, 463, 520
MboII GAAGA 6 cut(s) 248, 292, 422, 530, 584, 671
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 2 cut(s) 354, 588
MluCI AATT 3 cut(s) 120, 324, 367
Mly113I GGCGCC 1 cut(s) 444
MseI TTAA 1 cut(s) 405
MspI CCGG 2 cut(s) 216, 687
MspR9I CCNGG 1 cut(s) 109
MunI CAATTG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 254, 690
NarI GGCGCC 1 cut(s) 444
NcoI CCATGG 1 cut(s) 542
NdeII GATC 3 cut(s) 79, 463, 520
NlaIII CATG 7 cut(s) 23, 72, 176, 194, 527, 546, 659
NlaIV GGNNCC 5 cut(s) 81, 374, 445, 587, 744
NmeAIII GCCGAG 1 cut(s) 763
NmuCI GTSAC 1 cut(s) 620
NspI RCATGY 1 cut(s) 23
PaeI GCATGC 1 cut(s) 23
PagI TCATGA 1 cut(s) 523
PciSI GCTCTTC 1 cut(s) 231
PfeI GAWTC 2 cut(s) 25, 706
PkrI GCNGC 2 cut(s) 274, 692
PluTI GGCGCC 1 cut(s) 447
PmaCI CACGTG 1 cut(s) 620
PmlI CACGTG 1 cut(s) 620
Ppu21I YACGTR 1 cut(s) 620
PpuMI RGGWCCY 1 cut(s) 742
PsiI TTATAA 1 cut(s) 323
Psp1406I AACGTT 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 742
Psp6I CCWGG 1 cut(s) 107
PspCI CACGTG 1 cut(s) 620
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 5 cut(s) 81, 374, 445, 587, 744
PspPI GGNCC 4 cut(s) 452, 634, 667, 742
PspPPI RGGWCCY 1 cut(s) 742
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 4 cut(s) 5, 222, 414, 481
RsaNI GTAC 4 cut(s) 4, 221, 413, 480
SalI GTCGAC 1 cut(s) 764
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 2 cut(s) 273, 691
Sau3AI GATC 3 cut(s) 79, 463, 520
Sau96I GGNCC 4 cut(s) 452, 634, 667, 742
ScaI AGTACT 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 2 cut(s) 354, 588
SfaNI GCATC 2 cut(s) 495, 724
SfoI GGCGCC 1 cut(s) 445
SgrAI CRCCGGYG 1 cut(s) 686
SinI GGWCC 2 cut(s) 667, 742
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
SphI GCATGC 1 cut(s) 23
Sse9I AATT 3 cut(s) 120, 324, 367
SsiI CCGC 3 cut(s) 257, 358, 690
SspDI GGCGCC 1 cut(s) 443
SspMI CTAG 2 cut(s) 32, 201
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 542
TaiI ACGT 2 cut(s) 411, 622
TaqI TCGA 4 cut(s) 9, 651, 704, 765
TasI AATT 3 cut(s) 120, 324, 367
TatI WGTACW 3 cut(s) 3, 220, 412
TauI GCSGC 1 cut(s) 693
TfiI GAWTC 2 cut(s) 25, 706
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 5 cut(s) 116, 145, 486, 540, 672
TspRI CASTG 1 cut(s) 270
VpaK11BI GGWCC 2 cut(s) 667, 742
XagI CCTNNNNNAGG 1 cut(s) 641
XceI RCATGY 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 765
XspI CTAG 2 cut(s) 32, 201
ZrmI AGTACT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.