Rh6BG370700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017671
Physical Location & Seq
Reverse (-)
60019893 .. 60020763
871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG370700.1

Sequence Viewer

Length: 315 bp
ATGGCGGATCAGAAAACCACACAAACCGATTCAACTCAATGGCGGGTTTATGAGAAGCGCGTTACGCTGGCTCTTCATGATGGACTTCTGGTGACGGAGGTGCTCGGACGGCGTGTAGGAGTTGTCGTCGCAGTTCGGCCGATTCTCGTACTTCCAATAGATGTCCATGAGGAGGAAGAGGCAGAAGGGCACCACCGAGAGGAAGGGCTTGAGGAGGTTGCGTGTGACGGCCACGAGGTCCTTGCGGAGGCTGTCGAGGCCGGGGAGAGTGAGGAGGAGGACCATCACGGCCTCGGCGCCGGCGACGTAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.37

Weight (kDa)

4.51

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20622
rosa_laevigata RLG00000003341 RLG00000005938
rosa_multiflora Rmu_sc0000821.1_g000001
rosa_rugosa Rorug07G0094300
rosa_samantha Rh3CG232200 Rh4AG415500 Rh6BG370700 Rh7AG226400 Rh7BG222400 Rh7CG240300 Rh7DG232500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 189, 296
AccII CGCG 1 cut(s) 60
AciI CCGC 3 cut(s) 5, 43, 245
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 2 cut(s) 137, 229
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 3 cut(s) 172, 199, 247
AgsI TTSAA 1 cut(s) 33
Alw21I GWGCWC 1 cut(s) 105
AlwI GGATC 1 cut(s) 15
AoxI GGCC 4 cut(s) 137, 229, 258, 289
AspLEI GCGC 2 cut(s) 60, 299
AspS9I GGNCC 2 cut(s) 238, 280
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 2 cut(s) 238, 280
BaeGI GKGCMC 1 cut(s) 192
BanI GGYRCC 2 cut(s) 189, 296
BauI CACGAG 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 105
BccI CCATC 2 cut(s) 74, 291
BceAI ACGGC 3 cut(s) 125, 244, 304
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BcnI CCSGG 1 cut(s) 262
BfaI CTAG 1 cut(s) 313
BfoI RGCGCY 1 cut(s) 300
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 2 cut(s) 238, 280
BmgT120I GGNCC 2 cut(s) 238, 280
BmiI GGNNCC 2 cut(s) 191, 298
BmrFI CCNGG 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 262
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 261, 292
BsaXI ACNNNNNCTCC 4 cut(s) 111, 141, 206, 236
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 199, 247
Bse118I RCCGGY 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 261, 292
BseLI CCNNNNNNNGG 3 cut(s) 172, 199, 247
BseRI GAGGAG 4 cut(s) 185, 227, 287, 290
BseSI GKGCMC 1 cut(s) 192
BseX3I CGGCCG 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 60
Bsh1285I CGRYCG 1 cut(s) 140
BshFI GGCC 4 cut(s) 139, 231, 260, 291
BshNI GGYRCC 2 cut(s) 189, 296
BsiEI CGRYCG 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 2 cut(s) 261, 300
BslI CCNNNNNNNGG 3 cut(s) 172, 199, 247
BsnI GGCC 4 cut(s) 139, 231, 260, 291
Bsp1286I GDGCHC 2 cut(s) 105, 192
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 3 cut(s) 5, 43, 245
BspANI GGCC 4 cut(s) 139, 231, 260, 291
BspFNI CGCG 1 cut(s) 60
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 191, 298
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 78
BspT107I GGYRCC 2 cut(s) 189, 296
BsrFI RCCGGY 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 261, 292
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 233
Bst6I CTCTTC 2 cut(s) 78, 171
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 69, 301
BstENI CCTNNNNNAGG 1 cut(s) 245
BstFNI CGCG 1 cut(s) 60
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 2 cut(s) 60, 299
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 1 cut(s) 140
BstMWI GCNNNNNNNGC 3 cut(s) 64, 109, 257
BstSCI CCNGG 1 cut(s) 260
BstSLI GKGCMC 1 cut(s) 192
BstUI CGCG 1 cut(s) 60
BstZI CGGCCG 1 cut(s) 137
BsuRI GGCC 4 cut(s) 139, 231, 260, 291
Cac8I GCNNGC 2 cut(s) 69, 301
CciI TCATGA 1 cut(s) 76
CfoI GCGC 2 cut(s) 60, 299
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 238, 280
Csp6I GTAC 1 cut(s) 149
CviAII CATG 2 cut(s) 77, 167
CviJI RGCY 8 cut(s) 71, 139, 208, 231, 251, 260, 291, 311
CviKI_1 RGCY 8 cut(s) 71, 139, 208, 231, 251, 260, 291, 311
CviQI GTAC 1 cut(s) 149
DinI GGCGCC 1 cut(s) 298
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EaeI YGGCCR 2 cut(s) 137, 229
EagI CGGCCG 1 cut(s) 137
Eam1104I CTCTTC 2 cut(s) 78, 171
EarI CTCTTC 2 cut(s) 78, 171
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 238, 280
Eco52I CGGCCG 1 cut(s) 137
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 238
EgeI GGCGCC 1 cut(s) 298
EheI GGCGCC 1 cut(s) 298
FaeI CATG 2 cut(s) 80, 170
FaiI YATR 3 cut(s) 51, 78, 168
FatI CATG 2 cut(s) 76, 166
FauI CCCGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 313
GlaI GCGC 2 cut(s) 59, 298
HaeII RGCGCY 1 cut(s) 300
HaeIII GGCC 4 cut(s) 139, 231, 260, 291
HapII CCGG 2 cut(s) 261, 300
HhaI GCGC 2 cut(s) 60, 299
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 2 cut(s) 80, 170
Hin6I GCGC 2 cut(s) 58, 297
HinP1I GCGC 2 cut(s) 58, 297
HinfI GANTC 2 cut(s) 29, 142
HpaII CCGG 2 cut(s) 261, 300
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 12, 107
Hpy188III TCNNGA 1 cut(s) 77
Hpy99I CGWCG 2 cut(s) 131, 308
HpyAV CCTTC 2 cut(s) 179, 197
HpyCH4IV ACGT 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 109, 257
HpySE526I ACGT 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 2 cut(s) 80, 170
HspAI GCGC 2 cut(s) 58, 297
KasI GGCGCC 1 cut(s) 296
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 78
LpnPI CCDG 3 cut(s) 53, 74, 274
MaeI CTAG 1 cut(s) 313
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 61, 91, 224
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 2 cut(s) 65, 188
MhlI GDGCHC 2 cut(s) 105, 192
Mly113I GGCGCC 1 cut(s) 297
MreI CGCCGGCG 1 cut(s) 299
MroNI GCCGGC 1 cut(s) 299
MspI CCGG 2 cut(s) 261, 300
MspR9I CCNGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 3 cut(s) 64, 109, 257
NaeI GCCGGC 1 cut(s) 301
NarI GGCGCC 1 cut(s) 297
NciI CCSGG 1 cut(s) 262
NdeII GATC 1 cut(s) 7
NgoMIV GCCGGC 1 cut(s) 299
NlaIII CATG 2 cut(s) 80, 170
NlaIV GGNNCC 2 cut(s) 191, 298
NmeAIII GCCGAG 1 cut(s) 273
NmuCI GTSAC 2 cut(s) 91, 224
PagI TCATGA 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PdiI GCCGGC 1 cut(s) 301
PfeI GAWTC 2 cut(s) 29, 142
PluTI GGCGCC 1 cut(s) 300
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 191, 298
PspPI GGNCC 2 cut(s) 238, 280
PspPPI RGGWCCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SapI GCTCTTC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 2 cut(s) 238, 280
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 2 cut(s) 105, 192
SetI ASST 4 cut(s) 102, 219, 240, 309
SfoI GGCGCC 1 cut(s) 298
SgrAI CRCCGGYG 1 cut(s) 299
SinI GGWCC 2 cut(s) 238, 280
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SsiI CCGC 3 cut(s) 5, 43, 245
SspDI GGCGCC 1 cut(s) 296
SspMI CTAG 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 260
TaiI ACGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 255
TfiI GAWTC 2 cut(s) 29, 142
TseFI GTSAC 2 cut(s) 91, 224
Tsp45I GTSAC 2 cut(s) 91, 224
TspDTI ATGAA 1 cut(s) 65
TspGWI ACGGA 1 cut(s) 110
VpaK11BI GGWCC 2 cut(s) 238, 280
XagI CCTNNNNNAGG 1 cut(s) 245
XspI CTAG 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.