Rh7DG232500

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017671
Physical Location & Seq
Reverse (-)
23007760 .. 23012282
4523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG232500.1

Sequence Viewer

Length: 813 bp
ATGTACATCGATATTAGGCATGCGATTCTCCTAGCAATCAACATTTTGAAATATGGAGTAGGAATGTCATGGGATTGGGATCCTTACAATACAATCAGCAACCTCACCTGGATAAAAGCAATTGTTCATATCATTCTCTTTGTGGTCTTTCCCTTCATCTCCATCAAAGTCCATGTCCCTCTAACCACACATGCCATTACTAGGACTACCAGCACCGGAGTACTCAAACAACTTGAAGAGCTTTCTGCACCTCTCGCGGTTACACTGGTGGCTGCTGTGCTTATCCTCCCACAAGCTATCTTCTGGTATGCCTACCTCATTATAATTCTCATTCCCTCTTGCCTCTGTGTGCTCAACCGCTTTGCGAATTGGCTCCATATTGTCCTTATTACCATACCAGTTCTTAACGTTGTACTAAGGGCAACCACTCTTCGTTGGCAAGGCGCCGTTGGGCCTGAACCTGATCATAATGAAGCAAGTGCGGGAGACACACAAGGGGTGGAGATGCGATTAGGTGAAGATCATGAAGCTGGCAGAGTCTGCAAAGAAGATAACGCTGGTGGGGGAGAAATGTATTCTGGGCTACATGACAATGTGAGTTGTCAATTCACCCAACTGCAACTTGTTAAAATAACAGGCATCTCTGTCAAAGCTGAATTAGATTTCATCAAATTTCTGCTTTTAAGTTCACCCGTGCTTAAGACGATGACTGTTACGCCTACTTCTGTGAATGATTTTCTGGAACTAGTTGGAGAGTTGCTCGGGTTTAGGTGTGCCTCAGCGAGTGCCAATATAATCTACTTAGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

270

Amino Acids

29.81

Weight (kDa)

5.72

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017671)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20622
rosa_laevigata RLG00000003341 RLG00000005938
rosa_multiflora Rmu_sc0000821.1_g000001
rosa_rugosa Rorug07G0094300
rosa_samantha Rh3CG232200 Rh4AG415500 Rh6BG370700 Rh7AG226400 Rh7BG222400 Rh7CG240300 Rh7DG232500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 443
AccII CGCG 1 cut(s) 257
AciI CCGC 3 cut(s) 257, 358, 482
AclI AACGTT 1 cut(s) 408
AclWI GGATC 2 cut(s) 74, 87
AcsI RAATTY 1 cut(s) 671
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 3 cut(s) 5, 222, 414
AfiI CCNNNNNNNGG 1 cut(s) 201
AflII CTTAAG 1 cut(s) 698
AgsI TTSAA 2 cut(s) 49, 236
AhlI ACTAGT 1 cut(s) 745
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 4 cut(s) 241, 296, 530, 653
AluI AGCT 4 cut(s) 241, 296, 530, 653
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 480
AlwI GGATC 2 cut(s) 74, 87
AlwNI CAGNNNCTG 1 cut(s) 540
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 671
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AspLEI GCGC 1 cut(s) 446
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 4 cut(s) 97, 527, 601, 681
AvaI CYCGRG 1 cut(s) 761
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 354
BbvCI CCTCAGC 1 cut(s) 778
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 431
BciT130I CCWGG 1 cut(s) 109
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 1 cut(s) 480
BcuI ACTAGT 1 cut(s) 745
BfaI CTAG 3 cut(s) 32, 201, 746
BfoI RGCGCY 1 cut(s) 447
BfrI CTTAAG 1 cut(s) 698
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmcAI AGTACT 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 761
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 3 cut(s) 81, 374, 445
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 495, 648
BplI GAGNNNNNCTC 2 cut(s) 744, 776
Bpu10I CCTNAGC 1 cut(s) 778
Bsa29I ATCGAT 1 cut(s) 9
BsaBI GATNNNNATC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 444
BsaWI WCCGGW 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 2 cut(s) 270, 398
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 1 cut(s) 109
BseCI ATCGAT 1 cut(s) 9
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 792
BseNI ACTGG 2 cut(s) 270, 398
BseXI GCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 1 cut(s) 454
BshNI GGYRCC 1 cut(s) 443
BshVI ATCGAT 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 454
BsoBI CYCGRG 1 cut(s) 761
Bsp1286I GDGCHC 1 cut(s) 354
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 79, 463, 520
BspACI CCGC 3 cut(s) 257, 358, 482
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 1 cut(s) 791
BspDI ATCGAT 1 cut(s) 9
BspFNI CGCG 1 cut(s) 257
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 3 cut(s) 81, 374, 445
BspPI GGATC 2 cut(s) 74, 87
BspQI GCTCTTC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 443
BspTI CTTAAG 1 cut(s) 698
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 270, 398
BssMI GATC 3 cut(s) 79, 463, 520
BssNI GRCGYC 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 712
Bst6I CTCTTC 2 cut(s) 231, 435
BstACI GRCGYC 1 cut(s) 444
BstAFI CTTAAG 1 cut(s) 698
BstAPI GCANNNNNTGC 1 cut(s) 540
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 21, 532
BstDEI CTNAG 3 cut(s) 416, 778, 802
BstFNI CGCG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 1 cut(s) 446
BstKTI GATC 3 cut(s) 82, 466, 523
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 3 cut(s) 79, 463, 520
BstMWI GCNNNNNNNGC 2 cut(s) 254, 540
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 2 cut(s) 23, 194
BstSCI CCNGG 1 cut(s) 107
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 1 cut(s) 454
BsuTUI ATCGAT 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 21, 532
CaiI CAGNNNCTG 1 cut(s) 540
CciI TCATGA 1 cut(s) 523
CfoI GCGC 1 cut(s) 446
Cfr13I GGNCC 1 cut(s) 452
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 3 cut(s) 4, 221, 413
CviAII CATG 7 cut(s) 20, 69, 173, 191, 524, 587, 810
CviJI RGCY 9 cut(s) 241, 272, 296, 373, 454, 530, 583, 653, 808
CviKI_1 RGCY 9 cut(s) 241, 272, 296, 373, 454, 530, 583, 653, 808
CviQI GTAC 3 cut(s) 4, 221, 413
DdeI CTNAG 3 cut(s) 416, 778, 802
DinI GGCGCC 1 cut(s) 445
DpnI GATC 3 cut(s) 81, 465, 522
DpnII GATC 3 cut(s) 79, 463, 520
Eam1104I CTCTTC 2 cut(s) 231, 435
EarI CTCTTC 2 cut(s) 231, 435
Eco88I CYCGRG 1 cut(s) 761
EcoRII CCWGG 1 cut(s) 107
EgeI GGCGCC 1 cut(s) 445
EheI GGCGCC 1 cut(s) 445
FaeI CATG 7 cut(s) 23, 72, 176, 194, 527, 590, 813
FaqI GGGAC 1 cut(s) 161
FatI CATG 7 cut(s) 19, 68, 172, 190, 523, 586, 809
FauI CCCGC 1 cut(s) 475
FbaI TGATCA 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 3 cut(s) 32, 201, 746
GlaI GCGC 1 cut(s) 445
GluI GCNGC 1 cut(s) 273
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 1 cut(s) 454
HapII CCGG 1 cut(s) 216
HhaI GCGC 1 cut(s) 446
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 7 cut(s) 23, 72, 176, 194, 527, 590, 813
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HinfI GANTC 2 cut(s) 25, 537
HpaII CCGG 1 cut(s) 216
HphI GGTGA 4 cut(s) 97, 527, 601, 681
Hpy166II GTNNAC 1 cut(s) 689
Hpy188III TCNNGA 2 cut(s) 524, 740
Hpy8I GTNNAC 1 cut(s) 689
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 712
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 3 cut(s) 248, 543, 619
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 540
HpyF3I CTNAG 3 cut(s) 416, 778, 802
HpySE526I ACGT 1 cut(s) 408
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 7 cut(s) 23, 72, 176, 194, 527, 590, 813
HspAI GCGC 1 cut(s) 444
KasI GGCGCC 1 cut(s) 443
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 3 cut(s) 79, 463, 520
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 1 cut(s) 378
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 2 cut(s) 495, 648
MaeI CTAG 3 cut(s) 32, 201, 746
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 2 cut(s) 259, 712
MalI GATC 3 cut(s) 81, 465, 522
MboI GATC 3 cut(s) 79, 463, 520
MboII GAAGA 5 cut(s) 248, 292, 422, 530, 560
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 6 cut(s) 120, 324, 367, 605, 656, 671
Mly113I GGCGCC 1 cut(s) 444
MlyI GAGTC 1 cut(s) 546
MmeI TCCRAC 1 cut(s) 730
MnlI CCTC 8 cut(s) 113, 189, 261, 296, 326, 346, 353, 787
MseI TTAA 4 cut(s) 405, 627, 683, 699
MslI CAYNNNNRTG 1 cut(s) 591
MspCI CTTAAG 1 cut(s) 698
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 109
MunI CAATTG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 254, 540
NarI GGCGCC 1 cut(s) 444
NdeII GATC 3 cut(s) 79, 463, 520
NlaIII CATG 7 cut(s) 23, 72, 176, 194, 527, 590, 813
NlaIV GGNNCC 3 cut(s) 81, 374, 445
NspI RCATGY 2 cut(s) 23, 194
PaeI GCATGC 1 cut(s) 23
PagI TCATGA 1 cut(s) 523
PciSI GCTCTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 545
PluTI GGCGCC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 545
PsiI TTATAA 1 cut(s) 323
Psp1406I AACGTT 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 3 cut(s) 81, 374, 445
PspPI GGNCC 1 cut(s) 452
PstNI CAGNNNCTG 1 cut(s) 540
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 3 cut(s) 5, 222, 414
RsaNI GTAC 3 cut(s) 4, 221, 413
RseI CAYNNNNRTG 1 cut(s) 591
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 4 cut(s) 405, 627, 683, 699
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 3 cut(s) 79, 463, 520
Sau96I GGNCC 1 cut(s) 452
ScaI AGTACT 1 cut(s) 222
SchI GAGTC 1 cut(s) 546
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 354
SfaNI GCATC 2 cut(s) 495, 648
SfoI GGCGCC 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 698
SmoI CTYRAG 1 cut(s) 698
SpeI ACTAGT 1 cut(s) 745
SphI GCATGC 1 cut(s) 23
Sse9I AATT 6 cut(s) 120, 324, 367, 605, 656, 671
SsiI CCGC 3 cut(s) 257, 358, 482
SspDI GGCGCC 1 cut(s) 443
SspMI CTAG 3 cut(s) 32, 201, 746
StyD4I CCNGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 712
TaiI ACGT 1 cut(s) 411
TaqI TCGA 1 cut(s) 9
TasI AATT 6 cut(s) 120, 324, 367, 605, 656, 671
TatI WGTACW 3 cut(s) 3, 220, 412
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 4 cut(s) 405, 627, 683, 699
Tru9I TTAA 4 cut(s) 405, 627, 683, 699
TscAI CASTG 1 cut(s) 270
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 5 cut(s) 116, 145, 486, 540, 655
TspRI CASTG 1 cut(s) 270
Vha464I CTTAAG 1 cut(s) 698
XapI RAATTY 1 cut(s) 671
XceI RCATGY 2 cut(s) 23, 194
XspI CTAG 3 cut(s) 32, 201, 746
ZrmI AGTACT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.