FvH4_5g21171

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015632
Physical Location & Seq
Reverse (-)
12716162 .. 12716604
443 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21171.t1

Sequence Viewer

Length: 318 bp
ATGGATATTGAGGCACCACATCTGCATTATGGGGAGGAACTGCCTCCAACTAGATTTCCAAGACTACCAGTCTACCTCATGTCCAAAGACCCCTGTACAAACTGTGGATCACAGACGCTTTGCCTAGTAGATTTCTGTCACCCAGTTAGCTATAGCTTTGCTGATTTAGGAGACCAAAGAGTAGGCCTTGCTCTTGCTCTTGCAGCGGAAAATATACTGGAGAGGAGCTTTGCCAACCGTTTGGAGTCCTTCAATTTGCATATTGCTGCTCTGGGGTTATTGGACTTCTCTTCGCTGTTCGTTGTTTGTGATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.63

Weight (kDa)

4.75

Isoelectric Point (pI)

58.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 72
AciI CCGC 1 cut(s) 206
AclWI GGATC 1 cut(s) 115
AfaI GTAC 1 cut(s) 97
AgsI TTSAA 1 cut(s) 253
AhdI GACNNNNNGTC 1 cut(s) 68
AluBI AGCT 3 cut(s) 150, 156, 228
AluI AGCT 3 cut(s) 150, 156, 228
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 1 cut(s) 115
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 203, 266
AsuHPI GGTGA 1 cut(s) 131
BanI GGYRCC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 215, 253
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 2 cut(s) 51, 125
BfmI CTRYAG 1 cut(s) 151
BisI GCNGC 2 cut(s) 204, 267
BlsI GCNGC 2 cut(s) 205, 268
BmeRI GACNNNNNGTC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 137
BmuI ACTGGG 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 165
Bse1I ACTGG 3 cut(s) 68, 143, 222
BseNI ACTGG 3 cut(s) 68, 143, 222
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 215, 253
BshFI GGCC 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 13
BsmAI GTCTC 1 cut(s) 165
BsnI GGCC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 165
Bsp1407I TGTACA 1 cut(s) 95
Bsp143I GATC 1 cut(s) 107
BspACI CCGC 1 cut(s) 206
BspANI GGCC 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 95
BsrI ACTGG 3 cut(s) 68, 143, 222
BssMI GATC 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 104, 239
Bst6I CTCTTC 1 cut(s) 295
BstAUI TGTACA 1 cut(s) 95
BstKTI GATC 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 215, 253
BstXI CCANNNNNNTGG 1 cut(s) 241
BsuRI GGCC 1 cut(s) 186
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 96
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 150, 156, 186, 228
CviKI_1 RGCY 4 cut(s) 150, 156, 186, 228
CviQI GTAC 1 cut(s) 96
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
DriI GACNNNNNGTC 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 295
Eam1105I GACNNNNNGTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 295
Eco147I AGGCCT 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 165
FaeI CATG 1 cut(s) 82
FaiI YATR 6 cut(s) 30, 80, 153, 215, 261, 316
FatI CATG 1 cut(s) 78
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 204, 267
Fsp4HI GCNGC 2 cut(s) 204, 267
FspBI CTAG 2 cut(s) 51, 125
GluI GCNGC 2 cut(s) 204, 267
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 1 cut(s) 186
HgaI GACGC 1 cut(s) 124
Hin1II CATG 1 cut(s) 82
HinfI GANTC 1 cut(s) 245
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 2 cut(s) 104, 239
HpyCH4V TGCA 3 cut(s) 25, 203, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 5 cut(s) 81, 106, 156, 203, 257
Lsp1109I GCAGC 2 cut(s) 215, 253
MaeI CTAG 2 cut(s) 51, 125
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MboII GAAGA 1 cut(s) 282
MluCI AATT 1 cut(s) 253
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 5 cut(s) 4, 28, 54, 86, 216
MspA1I CMGCKG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 1 cut(s) 107
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 137
PceI AGGCCT 1 cut(s) 186
PkrI GCNGC 2 cut(s) 205, 268
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 15
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SatI GCNGC 2 cut(s) 204, 267
Sau3AI GATC 1 cut(s) 107
SchI GAGTC 1 cut(s) 254
SetI ASST 4 cut(s) 78, 152, 158, 230
SfcI CTRYAG 1 cut(s) 151
Sse9I AATT 1 cut(s) 253
SseBI AGGCCT 1 cut(s) 186
SsiI CCGC 1 cut(s) 206
SspMI CTAG 2 cut(s) 51, 125
StuI AGGCCT 1 cut(s) 186
TaaI ACNGT 2 cut(s) 104, 239
TasI AATT 1 cut(s) 253
TatI WGTACW 1 cut(s) 95
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 2 cut(s) 203, 266
Tsp45I GTSAC 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 2 cut(s) 51, 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.