RLG00000012540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015632
Physical Location & Seq
Forward (+)
19716418 .. 19718907
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012540

Sequence Viewer

Length: 1227 bp
ATGGAGATGATAGCGGAACGATCCCTAGCGGCGATGGAGAGTAAGTATCTCTACATATGTACCAGTGAAACGCACAAATCTGTTCCCGATCGGTGGGTTGTTCACCGAATCGAAATGAGCGATGTGTTATCTGCATCGGAAGACCATATTCGTTACCTGCCTTTCAAGCAAGTGGCTAATGAAATTGGCGACCGTGACCTTCCGTATTTGGTGGGTTGCGGTGTCTTCCAATCCAAAATTCTCATCGGCGGCGGCCTGAAGAAGAGGAAAACTCCGGTGTTCCCTCCGTCTCCGTCTTCATCTGTGTATTTTTTTGAGACAGACACAACCGATCGGAAACTAGATCAGAAACTCAAGTTGGAGAGCTTTCCCCCGTTCATAGGAGGGAAAGCTCGACCCCTGCTAGTGGAGATGAAGGGGCAACTTTATGCTCTTGCTGGTGACCTGATGAAGTTGAGATACGATAGTCCTTTTGAGAGATTTGACCCGTCCTGCGAGGAATGGTCATCCCTGGCCGGACCTCCTATTTGGGATCCTGACTCTCCATATTGGGCTCCCCTCATCGGTTCAGGTTATGTAATTACAGACGCCAGCATTCTTTTCTCACTTCAGGATACCCCGGTGTTCCGATTTGACATCACGAAGCCGAATGCAGGATGGTCTGTACAGCAATCTTTGTGTTCTGGAAAATCTTTTCCCTTTGAAGGCACAACTCTAGTTCATGACTGTGTTTATGGTGGTTTCATAATCTTTGCCATAGATATTGAGCGAGATTATGATGGGAAGTGGCCTCAAACTAGATTTCCAAGAATACTAGTCTACCACATGTCCGAGGATTATGGTTCTTGGACCGATGTAGCAACTGTGGAGCTGCCATTTACAAATGAGTTGCCTCTCATATTTCTTCAACCAGTCAGCTATAACTTTGTTGGTCTAGGAGATCAAAGTGTATGCCTGGTTCTGGCTAAATTTAGCAGCCCACTAAAATGGGGCGATAGTGCAGAAAGTGAGAAGATGAGTTTTCTTGTGACAACATTCAAGTATAAAATTGAAACTCCCATGAAAAGCACAAGGGAAGAATCACCCATTTCCTTTTCTTTCAGCCGTCAATTCCTGAGTAATCCTGTCATCTTTGAATATAATGTCCAGCAGCATACTCCATCTCCTGGAATCCCAAATGTTGTTATGCTGGGCGCGTTTGTGCTATCTGCACACTATGCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

409

Amino Acids

46.07

Weight (kDa)

5.3

Isoelectric Point (pI)

58.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 1166
AccI GTMKAC 1 cut(s) 819
AccII CGCG 1 cut(s) 1196
AciI CCGC 5 cut(s) 14, 29, 219, 249, 252
AclWI GGATC 3 cut(s) 15, 527, 540
AcoI YGGCCR 1 cut(s) 513
AcsI RAATTY 2 cut(s) 237, 968
AcuI CTGAAG 2 cut(s) 278, 593
AcyI GRCGYC 1 cut(s) 588
AfaI GTAC 2 cut(s) 61, 666
AfiI CCNNNNNNNGG 8 cut(s) 93, 380, 406, 563, 653, 704, 961, 1166
AflIII ACRYGT 1 cut(s) 825
AgsI TTSAA 6 cut(s) 166, 704, 908, 1039, 1052, 1136
AhlI ACTAGT 1 cut(s) 814
AjnI CCWGG 3 cut(s) 510, 954, 1165
AjuI GAANNNNNNNTTGG 4 cut(s) 222, 254, 341, 373
AluBI AGCT 4 cut(s) 366, 392, 871, 918
AluI AGCT 4 cut(s) 366, 392, 871, 918
Alw26I GTCTC 2 cut(s) 294, 311
AlwI GGATC 3 cut(s) 15, 527, 540
AoxI GGCC 3 cut(s) 253, 513, 788
ApeKI GCWGC 3 cut(s) 871, 975, 1150
ApoI RAATTY 2 cut(s) 237, 968
ArsI GACNNNNNNTTYG 2 cut(s) 510, 542
AspLEI GCGC 1 cut(s) 1196
AspS9I GGNCC 2 cut(s) 518, 849
AsuC2I CCSGG 1 cut(s) 620
AsuHPI GGTGA 3 cut(s) 95, 452, 1074
AvaII GGWCC 2 cut(s) 518, 849
BaeI ACNNNNGTAYC 6 cut(s) 43, 76, 451, 484, 606, 639
BamHI GGATCC 1 cut(s) 532
BanII GRGCYC 1 cut(s) 556
BarI GAAGNNNNNNTAC 2 cut(s) 443, 475
BbsI GAAGAC 3 cut(s) 147, 217, 288
BbvI GCAGC 3 cut(s) 858, 987, 1162
BccI CCATC 4 cut(s) 28, 651, 773, 1168
BceAI ACGGC 1 cut(s) 1089
BciT130I CCWGG 3 cut(s) 512, 956, 1167
BciVI GTATCC 1 cut(s) 607
BcnI CCSGG 1 cut(s) 620
BcoDI GTCTC 2 cut(s) 294, 311
BcuI ACTAGT 1 cut(s) 814
BfaI CTAG 7 cut(s) 26, 341, 404, 716, 798, 815, 935
BfuAI ACCTGC 1 cut(s) 165
BfuI GTATCC 1 cut(s) 607
BisI GCNGC 6 cut(s) 30, 250, 253, 872, 976, 1151
BlsI GCNGC 6 cut(s) 31, 251, 254, 873, 977, 1152
Bme1390I CCNGG 4 cut(s) 512, 620, 956, 1167
Bme18I GGWCC 2 cut(s) 518, 849
BmgT120I GGNCC 2 cut(s) 518, 849
BmiI GGNNCC 2 cut(s) 534, 555
BmrFI CCNGG 4 cut(s) 512, 620, 956, 1167
BmsI GCATC 1 cut(s) 143
BpiI GAAGAC 3 cut(s) 147, 217, 288
BplI GAGNNNNNCTC 2 cut(s) 256, 288
BpuEI CTTGAG 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 620
BsaHI GRCGYC 1 cut(s) 588
BsaJI CCNNGG 3 cut(s) 510, 618, 831
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 1147, 1177
Bsc4I CCNNNNNNNGG 8 cut(s) 93, 380, 406, 563, 653, 704, 961, 1166
Bse1I ACTGG 2 cut(s) 63, 911
BseBI CCWGG 3 cut(s) 512, 956, 1167
BseDI CCNNGG 3 cut(s) 510, 618, 831
BseGI GGATG 2 cut(s) 506, 662
BseLI CCNNNNNNNGG 8 cut(s) 93, 380, 406, 563, 653, 704, 961, 1166
BseMII CTCAG 1 cut(s) 1106
BseNI ACTGG 2 cut(s) 63, 911
BseXI GCAGC 3 cut(s) 858, 987, 1162
BseYI CCCAGC 1 cut(s) 1189
BsgI GTGCAG 2 cut(s) 1020, 1194
Bsh1236I CGCG 1 cut(s) 1196
Bsh1285I CGRYCG 3 cut(s) 91, 193, 334
BshFI GGCC 3 cut(s) 255, 515, 790
BsiEI CGRYCG 3 cut(s) 91, 193, 334
BsiSI CCGG 3 cut(s) 275, 516, 620
BslI CCNNNNNNNGG 8 cut(s) 93, 380, 406, 563, 653, 704, 961, 1166
BsmAI GTCTC 2 cut(s) 294, 311
BsmBI CGTCTC 1 cut(s) 294
BsmI GAATGC 2 cut(s) 594, 655
BsnI GGCC 3 cut(s) 255, 515, 790
Bsp1286I GDGCHC 1 cut(s) 556
Bsp1407I TGTACA 1 cut(s) 664
Bsp143I GATC 6 cut(s) 20, 88, 331, 343, 532, 940
BspACI CCGC 5 cut(s) 14, 29, 219, 249, 252
BspANI GGCC 3 cut(s) 255, 515, 790
BspCNI CTCAG 1 cut(s) 1107
BspFNI CGCG 1 cut(s) 1196
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 2 cut(s) 534, 555
BspMI ACCTGC 1 cut(s) 165
BspPI GGATC 3 cut(s) 15, 527, 540
BsrGI TGTACA 1 cut(s) 664
BsrI ACTGG 2 cut(s) 63, 911
BssECI CCNNGG 3 cut(s) 510, 618, 831
BssMI GATC 6 cut(s) 20, 88, 331, 343, 532, 940
BssNI GRCGYC 1 cut(s) 588
Bst2UI CCWGG 3 cut(s) 512, 956, 1167
Bst4CI ACNGT 3 cut(s) 194, 728, 865
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 588
BstAPI GCANNNNNTGC 1 cut(s) 1217
BstAUI TGTACA 1 cut(s) 664
BstC8I GCNNGC 1 cut(s) 592
BstDEI CTNAG 1 cut(s) 1115
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 2 cut(s) 506, 662
BstFNI CGCG 1 cut(s) 1196
BstHHI GCGC 1 cut(s) 1196
BstKTI GATC 6 cut(s) 23, 91, 334, 346, 535, 943
BstMAI GTCTC 2 cut(s) 294, 311
BstMBI GATC 6 cut(s) 20, 88, 331, 343, 532, 940
BstMCI CGRYCG 3 cut(s) 91, 193, 334
BstMWI GCNNNNNNNGC 2 cut(s) 166, 1217
BstNI CCWGG 3 cut(s) 512, 956, 1167
BstNSI RCATGY 1 cut(s) 829
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 4 cut(s) 510, 618, 954, 1165
BstUI CGCG 1 cut(s) 1196
BstV1I GCAGC 3 cut(s) 858, 987, 1162
BstV2I GAAGAC 3 cut(s) 147, 217, 288
BstX2I RGATCY 1 cut(s) 532
BstXI CCANNNNNNTGG 1 cut(s) 987
BstYI RGATCY 1 cut(s) 532
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 3 cut(s) 255, 515, 790
BtgZI GCGATG 2 cut(s) 47, 135
BtsCI GGATG 2 cut(s) 506, 662
BtsIMutI CAGTG 1 cut(s) 70
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 592
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 1196
Cfr13I GGNCC 2 cut(s) 518, 849
CseI GACGC 1 cut(s) 596
Csp6I GTAC 2 cut(s) 60, 665
CviAII CATG 3 cut(s) 722, 826, 1060
CviQI GTAC 2 cut(s) 60, 665
DdeI CTNAG 1 cut(s) 1115
DpnI GATC 6 cut(s) 22, 90, 333, 345, 534, 942
DpnII GATC 6 cut(s) 20, 88, 331, 343, 532, 940
EaeI YGGCCR 1 cut(s) 513
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 556
Eco47I GGWCC 2 cut(s) 518, 849
Eco57I CTGAAG 2 cut(s) 278, 593
Eco91I GGTNACC 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 440
EcoRII CCWGG 3 cut(s) 510, 954, 1165
EcoT38I GRGCYC 1 cut(s) 556
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 3 cut(s) 725, 829, 1063
FatI CATG 3 cut(s) 721, 825, 1059
FauNDI CATATG 1 cut(s) 56
FblI GTMKAC 1 cut(s) 819
Fnu4HI GCNGC 6 cut(s) 30, 250, 253, 872, 976, 1151
FokI GGATG 2 cut(s) 493, 669
FriOI GRGCYC 1 cut(s) 556
Fsp4HI GCNGC 6 cut(s) 30, 250, 253, 872, 976, 1151
FspBI CTAG 7 cut(s) 26, 341, 404, 716, 798, 815, 935
GlaI GCGC 1 cut(s) 1195
GluI GCNGC 6 cut(s) 30, 250, 253, 872, 976, 1151
GsaI CCCAGC 1 cut(s) 1193
HaeIII GGCC 3 cut(s) 255, 515, 790
HapII CCGG 3 cut(s) 275, 516, 620
HgaI GACGC 1 cut(s) 596
HhaI GCGC 1 cut(s) 1196
Hin1I GRCGYC 1 cut(s) 588
Hin1II CATG 3 cut(s) 725, 829, 1063
Hin6I GCGC 1 cut(s) 1194
HinP1I GCGC 1 cut(s) 1194
HinfI GANTC 4 cut(s) 108, 539, 1079, 1170
HpaII CCGG 3 cut(s) 275, 516, 620
HphI GGTGA 3 cut(s) 95, 452, 1074
Hpy166II GTNNAC 2 cut(s) 103, 820
Hpy188I TCNGA 5 cut(s) 139, 336, 348, 629, 832
Hpy188III TCNNGA 7 cut(s) 86, 536, 611, 640, 684, 722, 1114
Hpy8I GTNNAC 2 cut(s) 103, 820
HpyAV CCTTC 3 cut(s) 209, 409, 698
HpyCH4III ACNGT 3 cut(s) 194, 728, 865
HpyCH4V TGCA 5 cut(s) 134, 653, 1001, 1211, 1220
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 1217
HpyF3I CTNAG 1 cut(s) 1115
Hsp92I GRCGYC 1 cut(s) 588
Hsp92II CATG 3 cut(s) 725, 829, 1063
HspAI GCGC 1 cut(s) 1194
Kzo9I GATC 6 cut(s) 20, 88, 331, 343, 532, 940
LmnI GCTCC 2 cut(s) 559, 868
Lsp1109I GCAGC 3 cut(s) 858, 987, 1162
LweI GCATC 1 cut(s) 143
MaeI CTAG 7 cut(s) 26, 341, 404, 716, 798, 815, 935
MaeIII GTNAC 4 cut(s) 152, 194, 440, 1027
MalI GATC 6 cut(s) 22, 90, 333, 345, 534, 942
MboI GATC 6 cut(s) 20, 88, 331, 343, 532, 940
MboII GAAGA 8 cut(s) 152, 217, 271, 274, 288, 896, 1024, 1088
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 7 cut(s) 183, 237, 579, 968, 1047, 1109, 1222
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 9 cut(s) 258, 294, 377, 490, 531, 569, 801, 826, 903
MslI CAYNNNNRTG 2 cut(s) 726, 985
MspI CCGG 3 cut(s) 275, 516, 620
MspR9I CCNGG 4 cut(s) 512, 620, 956, 1167
Mva1269I GAATGC 2 cut(s) 594, 655
MvaI CCWGG 3 cut(s) 512, 956, 1167
MvnI CGCG 1 cut(s) 1196
MwoI GCNNNNNNNGC 2 cut(s) 166, 1217
NciI CCSGG 1 cut(s) 620
NdeI CATATG 1 cut(s) 56
NdeII GATC 6 cut(s) 20, 88, 331, 343, 532, 940
NlaIII CATG 3 cut(s) 725, 829, 1063
NlaIV GGNNCC 2 cut(s) 534, 555
NmuCI GTSAC 3 cut(s) 194, 440, 1027
NspI RCATGY 1 cut(s) 829
PagI TCATGA 1 cut(s) 721
PciI ACATGT 1 cut(s) 825
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 2 cut(s) 594, 655
PfeI GAWTC 3 cut(s) 108, 1079, 1170
PflMI CCANNNNNTGG 1 cut(s) 1166
PfoI TCCNGGA 1 cut(s) 1165
PkrI GCNGC 6 cut(s) 31, 251, 254, 873, 977, 1152
Ple19I CGATCG 2 cut(s) 91, 334
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
PscI ACATGT 1 cut(s) 825
Psp6I CCWGG 3 cut(s) 510, 954, 1165
PspEI GGTNACC 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 1189
PspGI CCWGG 3 cut(s) 510, 954, 1165
PspN4I GGNNCC 2 cut(s) 534, 555
PspPI GGNCC 2 cut(s) 518, 849
PsrI GAACNNNNNNTAC 2 cut(s) 942, 974
PsuI RGATCY 1 cut(s) 532
PvuI CGATCG 2 cut(s) 91, 334
RsaI GTAC 2 cut(s) 61, 666
RsaNI GTAC 2 cut(s) 60, 665
RseI CAYNNNNRTG 2 cut(s) 726, 985
SatI GCNGC 6 cut(s) 30, 250, 253, 872, 976, 1151
Sau3AI GATC 6 cut(s) 20, 88, 331, 343, 532, 940
Sau96I GGNCC 2 cut(s) 518, 849
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 4 cut(s) 512, 620, 956, 1167
SduI GDGCHC 1 cut(s) 556
SetI ASST 9 cut(s) 159, 201, 368, 394, 447, 523, 574, 873, 920
SfaNI GCATC 1 cut(s) 143
SinI GGWCC 2 cut(s) 518, 849
SmiMI CAYNNNNRTG 2 cut(s) 726, 985
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SpeI ACTAGT 1 cut(s) 814
Sse9I AATT 7 cut(s) 183, 237, 579, 968, 1047, 1109, 1222
SsiI CCGC 5 cut(s) 14, 29, 219, 249, 252
SspMI CTAG 7 cut(s) 26, 341, 404, 716, 798, 815, 935
StyD4I CCNGG 4 cut(s) 510, 618, 954, 1165
TaaI ACNGT 3 cut(s) 194, 728, 865
TaqI TCGA 2 cut(s) 111, 394
TaqII GACCGA 1 cut(s) 866
TasI AATT 7 cut(s) 183, 237, 579, 968, 1047, 1109, 1222
TatI WGTACW 1 cut(s) 664
TauI GCSGC 3 cut(s) 32, 252, 255
TfiI GAWTC 3 cut(s) 108, 1079, 1170
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 3 cut(s) 194, 440, 1027
TseI GCWGC 3 cut(s) 871, 975, 1150
Tsp45I GTSAC 3 cut(s) 194, 440, 1027
TspDTI ATGAA 8 cut(s) 195, 288, 367, 428, 464, 710, 733, 1076
TspGWI ACGGA 3 cut(s) 192, 276, 282
TspRI CASTG 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 1166
VpaK11BI GGWCC 2 cut(s) 518, 849
XapI RAATTY 2 cut(s) 237, 968
XceI RCATGY 1 cut(s) 829
XmiI GTMKAC 1 cut(s) 819
XspI CTAG 7 cut(s) 26, 341, 404, 716, 798, 815, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.