Rroxscaffold_7G00181990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015632
Physical Location & Seq
Forward (+)
21013121 .. 21013786
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181990.1

Sequence Viewer

Length: 666 bp
ATGACTCCCCACGGTTCAGGTTATGTAATTACAAACACTAGCATTCTTCTCTCACTTCAGGCTACCCCGGTGTTCCGGTTTGACATCACGAAGCCAAATGCAGGATGGTCTGTACAGCAATCTTTGTGTTCTGGAAAATCTTTTCCCTTTCAAGGCACAACTCTAGTTCATGACTGTGTTTATGGTGGTTTCATAATCTTTGCCATAGATATTGAGCCAGAAATTTCGCCTTATGATGAGAACTGGCCTCATACTAGATTTCCAAGAATACTAGTCTACCACATGTCCGAGGATTATGGTTCTTGGACCGATGTAGCAACTGTGGAACTGCCATTTACAAATGAGTTGCCTCGGAAATTTCAAGAACCAGTAAGCTATAACTTTGTTAGTCTAGGAGATCAAAGAGTATGCCTGGTTCTGGCTACATTTAGGACCGCAATAAACAGAGGCGATCCTGCAGGAAGTGAGAAGATGAGTTTTGTGGTGACAACATTCAAGTACAAAATTGAAACTCCCATGAAAAGGACAAGGGAAGAATCACCCATTTCCTTTTCTTTCAGCTGTCAATTCCTGAGTAATCCTGTCGTCTTTGAATATAATGTCCAGCAGCACACTCCATCTCCTGCAATCCCGAATGCTGTTATGCTGGGCGCGTTTGTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.88

Weight (kDa)

5.71

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 276
AccII CGCG 1 cut(s) 653
AciI CCGC 1 cut(s) 435
AclWI GGATC 1 cut(s) 446
AcsI RAATTY 2 cut(s) 222, 356
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 2 cut(s) 114, 500
AfiI CCNNNNNNNGG 4 cut(s) 101, 152, 418, 522
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 5 cut(s) 152, 362, 496, 509, 593
AhlI ACTAGT 1 cut(s) 271
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 2 cut(s) 375, 561
AluI AGCT 2 cut(s) 375, 561
AlwI GGATC 1 cut(s) 446
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 607
ApoI RAATTY 2 cut(s) 222, 356
AspLEI GCGC 1 cut(s) 653
AspS9I GGNCC 2 cut(s) 306, 432
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 496, 531
AvaII GGWCC 2 cut(s) 306, 432
BbvI GCAGC 1 cut(s) 619
BccI CCATC 2 cut(s) 99, 625
BciT130I CCWGG 1 cut(s) 413
BcnI CCSGG 1 cut(s) 68
BcuI ACTAGT 1 cut(s) 271
BfaI CTAG 5 cut(s) 39, 164, 255, 272, 392
BfmI CTRYAG 1 cut(s) 456
BisI GCNGC 1 cut(s) 608
BlsI GCNGC 1 cut(s) 609
Bme1390I CCNGG 2 cut(s) 68, 413
Bme18I GGWCC 2 cut(s) 306, 432
BmgT120I GGNCC 2 cut(s) 306, 432
BmrFI CCNGG 2 cut(s) 68, 413
BpuMI CCSGG 1 cut(s) 68
BsaJI CCNNGG 4 cut(s) 10, 66, 288, 350
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 152, 418, 522
Bse1I ACTGG 2 cut(s) 248, 368
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 4 cut(s) 10, 66, 288, 350
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 4 cut(s) 101, 152, 418, 522
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 2 cut(s) 248, 368
BseXI GCAGC 1 cut(s) 619
BseYI CCCAGC 1 cut(s) 646
Bsh1236I CGCG 1 cut(s) 653
BshFI GGCC 1 cut(s) 247
BsiSI CCGG 2 cut(s) 68, 76
BslI CCNNNNNNNGG 4 cut(s) 101, 152, 418, 522
BsmI GAATGC 2 cut(s) 42, 640
BsnI GGCC 1 cut(s) 247
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 2 cut(s) 397, 451
BspACI CCGC 1 cut(s) 435
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 564
BspFNI CGCG 1 cut(s) 653
BspHI TCATGA 1 cut(s) 169
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 1 cut(s) 446
BsrGI TGTACA 1 cut(s) 112
BsrI ACTGG 2 cut(s) 248, 368
BssECI CCNNGG 4 cut(s) 10, 66, 288, 350
BssMI GATC 2 cut(s) 397, 451
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 3 cut(s) 14, 176, 322
BstAUI TGTACA 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 572
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 110
BstFNI CGCG 1 cut(s) 653
BstHHI GCGC 1 cut(s) 653
BstKTI GATC 2 cut(s) 400, 454
BstMBI GATC 2 cut(s) 397, 451
BstNI CCWGG 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 2 cut(s) 66, 411
BstSFI CTRYAG 1 cut(s) 456
BstUI CGCG 1 cut(s) 653
BstV1I GCAGC 1 cut(s) 619
BsuRI GGCC 1 cut(s) 247
BtgI CCRYGG 1 cut(s) 10
BtsCI GGATG 1 cut(s) 110
CciI TCATGA 1 cut(s) 169
CfoI GCGC 1 cut(s) 653
Cfr13I GGNCC 2 cut(s) 306, 432
Csp6I GTAC 2 cut(s) 113, 499
CviAII CATG 3 cut(s) 170, 283, 517
CviJI RGCY 7 cut(s) 62, 94, 217, 247, 375, 422, 561
CviKI_1 RGCY 7 cut(s) 62, 94, 217, 247, 375, 422, 561
CviQI GTAC 2 cut(s) 113, 499
DdeI CTNAG 1 cut(s) 572
DpnI GATC 2 cut(s) 399, 453
DpnII GATC 2 cut(s) 397, 451
Eco47I GGWCC 2 cut(s) 306, 432
Eco57I CTGAAG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 411
FaeI CATG 3 cut(s) 173, 286, 520
FatI CATG 3 cut(s) 169, 282, 516
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 608
FokI GGATG 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 608
FspBI CTAG 5 cut(s) 39, 164, 255, 272, 392
GlaI GCGC 1 cut(s) 652
GluI GCNGC 1 cut(s) 608
GsaI CCCAGC 1 cut(s) 650
HaeIII GGCC 1 cut(s) 247
HapII CCGG 2 cut(s) 68, 76
HhaI GCGC 1 cut(s) 653
Hin1II CATG 3 cut(s) 173, 286, 520
Hin6I GCGC 1 cut(s) 651
HinP1I GCGC 1 cut(s) 651
HinfI GANTC 2 cut(s) 4, 536
HpaII CCGG 2 cut(s) 68, 76
HphI GGTGA 2 cut(s) 496, 531
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 289, 354
Hpy188III TCNNGA 6 cut(s) 88, 132, 170, 362, 571, 631
Hpy8I GTNNAC 1 cut(s) 277
HpyCH4III ACNGT 3 cut(s) 14, 176, 322
HpyCH4V TGCA 3 cut(s) 101, 458, 626
HpyF3I CTNAG 1 cut(s) 572
Hsp92II CATG 3 cut(s) 173, 286, 520
HspAI GCGC 1 cut(s) 651
Kzo9I GATC 2 cut(s) 397, 451
Lsp1109I GCAGC 1 cut(s) 619
MaeI CTAG 5 cut(s) 39, 164, 255, 272, 392
MaeIII GTNAC 1 cut(s) 484
MalI GATC 2 cut(s) 399, 453
MboI GATC 2 cut(s) 397, 451
MboII GAAGA 3 cut(s) 38, 481, 545
MluCI AATT 5 cut(s) 27, 222, 356, 504, 566
MnlI CCTC 4 cut(s) 258, 283, 360, 440
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 561
MspI CCGG 2 cut(s) 68, 76
MspR9I CCNGG 2 cut(s) 68, 413
Mva1269I GAATGC 2 cut(s) 42, 640
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 1 cut(s) 653
NciI CCSGG 1 cut(s) 68
NdeII GATC 2 cut(s) 397, 451
NlaIII CATG 3 cut(s) 173, 286, 520
NmuCI GTSAC 1 cut(s) 484
NspI RCATGY 1 cut(s) 286
PagI TCATGA 1 cut(s) 169
PciI ACATGT 1 cut(s) 282
PctI GAATGC 2 cut(s) 42, 640
PfeI GAWTC 1 cut(s) 536
PkrI GCNGC 1 cut(s) 609
PscI ACATGT 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 411
PspFI CCCAGC 1 cut(s) 646
PspGI CCWGG 1 cut(s) 411
PspPI GGNCC 2 cut(s) 306, 432
PsrI GAACNNNNNNTAC 2 cut(s) 399, 431
PstI CTGCAG 1 cut(s) 460
PvuII CAGCTG 1 cut(s) 561
RsaI GTAC 2 cut(s) 114, 500
RsaNI GTAC 2 cut(s) 113, 499
RseI CAYNNNNRTG 1 cut(s) 174
SatI GCNGC 1 cut(s) 608
Sau3AI GATC 2 cut(s) 397, 451
Sau96I GGNCC 2 cut(s) 306, 432
SbfI CCTGCAGG 1 cut(s) 460
ScrFI CCNGG 2 cut(s) 68, 413
SdaI CCTGCAGG 1 cut(s) 460
SetI ASST 3 cut(s) 22, 377, 563
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 2 cut(s) 306, 432
SmiMI CAYNNNNRTG 1 cut(s) 174
SpeI ACTAGT 1 cut(s) 271
Sse8387I CCTGCAGG 1 cut(s) 460
Sse9I AATT 5 cut(s) 27, 222, 356, 504, 566
SsiI CCGC 1 cut(s) 435
SspMI CTAG 5 cut(s) 39, 164, 255, 272, 392
StyD4I CCNGG 2 cut(s) 66, 411
TaaI ACNGT 3 cut(s) 14, 176, 322
TaqII GACCGA 1 cut(s) 323
TasI AATT 5 cut(s) 27, 222, 356, 504, 566
TatI WGTACW 2 cut(s) 112, 498
TfiI GAWTC 1 cut(s) 536
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 1 cut(s) 607
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 3 cut(s) 158, 181, 533
VpaK11BI GGWCC 2 cut(s) 306, 432
XapI RAATTY 2 cut(s) 222, 356
XceI RCATGY 1 cut(s) 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 5 cut(s) 39, 164, 255, 272, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.