Rh6DG291400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015632
Physical Location & Seq
Reverse (-)
48924362 .. 48926145
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG291400.1

Sequence Viewer

Length: 1218 bp
ATGGAGATGATAGCGGAACGATCCCTAGCCCTAGCGGCGATGGAGAGCAAGTATCTCTACATATGTACCTGTGAAATGCACAAATCTGTTTTCGATCGGTGGGTTGTTCACCGAATCGAAATGAGCGATGTGTTATCTGCATCGGAAGACCATATTCGTTATCTGCCTTTCAAGCAAGTGGCTAATGAAATTGGCGGCCATGACCTTCCGTTGTTGGTGGGTTGTGGTGTCTTCAAATCCAAAATTCTCATCGGCGGCGGCGTGAAGAAAATTCCGGGGGCCCATCCATCTCCAGCTTCGCCTGTGTATTTTTTTGAGACAGACACAACCGATCGGAAACTCAATCAGAAACTCAAGTTGGGGAGCTTTCCCCCTTTCATAGGAGGAAAAGCTCAACCGCTGCTAGTGGAGATGAAGGGGCAACTTTATGCTCTTCCCGGTGACGAGATGAAGTTGAGATACGATAGTCATTTTGAGAGATTTGACCCGTCCTGCGAAAAATGGTCACCCCTGGCCCGACCTCCTATTTGGGATCCTGACTCTCCATACTATAGCACTCCTGTCGGTTCAGGTTATGTAATCACAGACACCAGCATTCTTTTCTCACGTCAGGCTACCCCTGTGTTCCGGTTTGACATCACGAAGCCGAATGCAGGATGGTCTGTACAGGAATCTTTGTGTTCTGGAAAATCTTTTCCCTTTCGAGGCACAACTCTAGTTCATGACTGTGTTTATGGTGGTTTCATAATCTTTGCCATAGATATTGAGCCAGAAAATTCGAATTATGATGGGAATTGGCCTCAAACTAGATTTCCAAGAATACTAGTCTACCACATGTCCCAAGATTATGGTTCTTGGACCGATGTAGCAACTGTGGAACTGCCATTTACAGATGAGTTGCCTCTCATATTTCAAGAACCAGTAAGCTATAACTTAGTTAGTCTAGGAGATCAAAGAGTATGCCTGGTTCTGGCTACATTTAGCAGCCCAATAAGCAGTGGCCGTTGGGAAGAAAGTGAGATGATGCATTTTCTTGTGACAACATTCAAGTACAAAACTGAAACTACCATGAAAGGAACAAGGGAAGAATCACCCATTTCCTTTTCTTTCAGCTGTCAATTCCTGAGTAATCCTGTCATCTTTGATTATAATATCCAGCAGCATACTCCATCTCCTGCAACCGAGCATGCCTTAACGCTGGGCGCGTTTTTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

405

Amino Acids

45.68

Weight (kDa)

5.5

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1149
AccI GTMKAC 1 cut(s) 828
AccII CGCG 1 cut(s) 1205
AciI CCGC 6 cut(s) 14, 35, 195, 255, 258, 398
AclWI GGATC 3 cut(s) 15, 527, 540
AcoI YGGCCR 2 cut(s) 196, 1000
AcsI RAATTY 3 cut(s) 243, 270, 775
AfaI GTAC 3 cut(s) 67, 666, 1052
AfiI CCNNNNNNNGG 4 cut(s) 380, 653, 704, 970
AflIII ACRYGT 1 cut(s) 834
AgsI TTSAA 4 cut(s) 172, 235, 914, 1048
AhlI ACTAGT 1 cut(s) 823
AjiI CACGTC 1 cut(s) 608
AjnI CCWGG 2 cut(s) 510, 963
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 5 cut(s) 296, 366, 392, 927, 1113
AluI AGCT 5 cut(s) 296, 366, 392, 927, 1113
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 3 cut(s) 15, 527, 540
AoxI GGCC 5 cut(s) 196, 279, 513, 797, 1000
ApaI GGGCCC 1 cut(s) 283
ApeKI GCWGC 3 cut(s) 400, 984, 1159
ApoI RAATTY 3 cut(s) 243, 270, 775
ArsI GACNNNNNNTTYG 2 cut(s) 510, 542
AspLEI GCGC 1 cut(s) 1205
AspS9I GGNCC 4 cut(s) 279, 280, 514, 858
AsuC2I CCSGG 2 cut(s) 276, 438
AsuHPI GGTGA 4 cut(s) 101, 452, 498, 1083
AsuII TTCGAA 1 cut(s) 779
AvaII GGWCC 1 cut(s) 858
BaeGI GKGCMC 1 cut(s) 283
BaeI ACNNNNGTAYC 4 cut(s) 49, 82, 451, 484
BamHI GGATCC 1 cut(s) 532
BanII GRGCYC 1 cut(s) 283
BarI GAAGNNNNNNTAC 2 cut(s) 443, 475
BbsI GAAGAC 2 cut(s) 153, 223
BbvI GCAGC 3 cut(s) 387, 996, 1171
BccI CCATC 6 cut(s) 34, 291, 295, 651, 782, 1177
BceAI ACGGC 1 cut(s) 987
BcgI CGANNNNNNTGC 2 cut(s) 544, 578
BciT130I CCWGG 2 cut(s) 512, 965
BcnI CCSGG 2 cut(s) 276, 438
BcoDI GTCTC 1 cut(s) 311
BcuI ACTAGT 1 cut(s) 823
BfaI CTAG 7 cut(s) 26, 32, 404, 716, 807, 824, 944
BfmI CTRYAG 1 cut(s) 550
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 7 cut(s) 36, 196, 256, 259, 401, 985, 1160
BlsI GCNGC 7 cut(s) 37, 197, 257, 260, 402, 986, 1161
Bme1390I CCNGG 4 cut(s) 276, 438, 512, 965
Bme18I GGWCC 1 cut(s) 858
BmgBI CACGTC 1 cut(s) 608
BmgT120I GGNCC 4 cut(s) 279, 280, 514, 858
BmiI GGNNCC 3 cut(s) 280, 281, 534
BmrFI CCNGG 4 cut(s) 276, 438, 512, 965
BmsI GCATC 2 cut(s) 149, 1014
BpiI GAAGAC 2 cut(s) 153, 223
BpmI CTGGAG 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 779
BpuEI CTTGAG 1 cut(s) 338
BpuMI CCSGG 2 cut(s) 276, 438
BsaJI CCNNGG 2 cut(s) 275, 510
BsaWI WCCGGW 1 cut(s) 627
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 1156, 1186
Bsc4I CCNNNNNNNGG 4 cut(s) 380, 653, 704, 970
Bse1I ACTGG 1 cut(s) 920
BseBI CCWGG 2 cut(s) 512, 965
BseDI CCNNGG 2 cut(s) 275, 510
BseGI GGATG 2 cut(s) 283, 662
BseLI CCNNNNNNNGG 4 cut(s) 380, 653, 704, 970
BseMII CTCAG 1 cut(s) 1115
BseNI ACTGG 1 cut(s) 920
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 3 cut(s) 387, 996, 1171
BseYI CCCAGC 1 cut(s) 1198
Bsh1236I CGCG 1 cut(s) 1205
Bsh1285I CGRYCG 2 cut(s) 97, 334
BshFI GGCC 5 cut(s) 198, 281, 515, 799, 1002
BsiEI CGRYCG 2 cut(s) 97, 334
BsiSI CCGG 3 cut(s) 275, 438, 628
BslFI GGGAC 1 cut(s) 823
BslI CCNNNNNNNGG 4 cut(s) 380, 653, 704, 970
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 823
BsmI GAATGC 2 cut(s) 594, 655
BsnI GGCC 5 cut(s) 198, 281, 515, 799, 1002
Bsp119I TTCGAA 1 cut(s) 779
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 283
Bsp1407I TGTACA 1 cut(s) 664
Bsp143I GATC 5 cut(s) 20, 94, 331, 532, 949
BspACI CCGC 6 cut(s) 14, 35, 195, 255, 258, 398
BspANI GGCC 5 cut(s) 198, 281, 515, 799, 1002
BspCNI CTCAG 1 cut(s) 1116
BspFNI CGCG 1 cut(s) 1205
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 3 cut(s) 280, 281, 534
BspPI GGATC 3 cut(s) 15, 527, 540
BspQI GCTCTTC 1 cut(s) 438
BspT104I TTCGAA 1 cut(s) 779
BsrGI TGTACA 1 cut(s) 664
BsrI ACTGG 1 cut(s) 920
BssECI CCNNGG 2 cut(s) 275, 510
BssMI GATC 5 cut(s) 20, 94, 331, 532, 949
Bst2UI CCWGG 2 cut(s) 512, 965
Bst4CI ACNGT 2 cut(s) 728, 874
Bst6I CTCTTC 1 cut(s) 438
BstAUI TGTACA 1 cut(s) 664
BstBI TTCGAA 1 cut(s) 779
BstC8I GCNNGC 1 cut(s) 1188
BstDEI CTNAG 2 cut(s) 934, 1124
BstEII GGTNACC 1 cut(s) 504
BstENI CCTNNNNNAGG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 283, 662
BstFNI CGCG 1 cut(s) 1205
BstHHI GCGC 1 cut(s) 1205
BstKTI GATC 5 cut(s) 23, 97, 334, 535, 952
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 5 cut(s) 20, 94, 331, 532, 949
BstMCI CGRYCG 2 cut(s) 97, 334
BstMWI GCNNNNNNNGC 3 cut(s) 35, 172, 993
BstNI CCWGG 2 cut(s) 512, 965
BstNSI RCATGY 2 cut(s) 838, 1190
BstPI GGTNACC 1 cut(s) 504
BstSCI CCNGG 4 cut(s) 274, 436, 510, 963
BstSFI CTRYAG 1 cut(s) 550
BstSLI GKGCMC 1 cut(s) 283
BstUI CGCG 1 cut(s) 1205
BstV1I GCAGC 3 cut(s) 387, 996, 1171
BstV2I GAAGAC 2 cut(s) 153, 223
BstX2I RGATCY 1 cut(s) 532
BstXI CCANNNNNNTGG 1 cut(s) 848
BstYI RGATCY 1 cut(s) 532
BsuRI GGCC 5 cut(s) 198, 281, 515, 799, 1002
BtgZI GCGATG 2 cut(s) 53, 141
BtrI CACGTC 1 cut(s) 608
BtsCI GGATG 2 cut(s) 283, 662
BtsI GCAGTG 1 cut(s) 1003
BtsIMutI CAGTG 1 cut(s) 1003
Cac8I GCNNGC 1 cut(s) 1188
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 1205
Cfr13I GGNCC 4 cut(s) 279, 280, 514, 858
Csp6I GTAC 3 cut(s) 66, 665, 1051
CviAII CATG 5 cut(s) 200, 722, 835, 1069, 1187
CviQI GTAC 3 cut(s) 66, 665, 1051
DdeI CTNAG 2 cut(s) 934, 1124
DpnI GATC 5 cut(s) 22, 96, 333, 534, 951
DpnII GATC 5 cut(s) 20, 94, 331, 532, 949
EaeI YGGCCR 2 cut(s) 196, 1000
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 858
Eco91I GGTNACC 1 cut(s) 504
EcoNI CCTNNNNNAGG 1 cut(s) 378
EcoO109I RGGNCCY 1 cut(s) 279
EcoO65I GGTNACC 1 cut(s) 504
EcoRII CCWGG 2 cut(s) 510, 963
EcoT22I ATGCAT 1 cut(s) 1029
EcoT38I GRGCYC 1 cut(s) 283
FaeI CATG 5 cut(s) 203, 725, 838, 1072, 1190
FaqI GGGAC 1 cut(s) 823
FatI CATG 5 cut(s) 199, 721, 834, 1068, 1186
FauNDI CATATG 1 cut(s) 62
FblI GTMKAC 1 cut(s) 828
Fnu4HI GCNGC 7 cut(s) 36, 196, 256, 259, 401, 985, 1160
FokI GGATG 2 cut(s) 270, 669
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 7 cut(s) 36, 196, 256, 259, 401, 985, 1160
FspBI CTAG 7 cut(s) 26, 32, 404, 716, 807, 824, 944
GlaI GCGC 1 cut(s) 1204
GluI GCNGC 7 cut(s) 36, 196, 256, 259, 401, 985, 1160
GsaI CCCAGC 1 cut(s) 1202
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 5 cut(s) 198, 281, 515, 799, 1002
HapII CCGG 3 cut(s) 275, 438, 628
HhaI GCGC 1 cut(s) 1205
Hin1II CATG 5 cut(s) 203, 725, 838, 1072, 1190
Hin6I GCGC 1 cut(s) 1203
HinP1I GCGC 1 cut(s) 1203
HinfI GANTC 4 cut(s) 114, 539, 671, 1088
HpaII CCGG 3 cut(s) 275, 438, 628
HphI GGTGA 4 cut(s) 101, 452, 498, 1083
Hpy166II GTNNAC 2 cut(s) 109, 829
Hpy188I TCNGA 3 cut(s) 145, 336, 348
Hpy188III TCNNGA 6 cut(s) 536, 640, 684, 722, 914, 1123
Hpy8I GTNNAC 2 cut(s) 109, 829
HpyAV CCTTC 2 cut(s) 215, 409
HpyCH4III ACNGT 2 cut(s) 728, 874
HpyCH4IV ACGT 1 cut(s) 607
HpyCH4V TGCA 5 cut(s) 79, 140, 653, 1027, 1178
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 172, 993
HpyF3I CTNAG 2 cut(s) 934, 1124
HpySE526I ACGT 1 cut(s) 607
Hsp92II CATG 5 cut(s) 203, 725, 838, 1072, 1190
HspAI GCGC 1 cut(s) 1203
Kzo9I GATC 5 cut(s) 20, 94, 331, 532, 949
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 1 cut(s) 363
Lsp1109I GCAGC 3 cut(s) 387, 996, 1171
LweI GCATC 2 cut(s) 149, 1014
MaeI CTAG 7 cut(s) 26, 32, 404, 716, 807, 824, 944
MaeII ACGT 1 cut(s) 607
MaeIII GTNAC 3 cut(s) 440, 504, 1036
MalI GATC 5 cut(s) 22, 96, 333, 534, 951
MboI GATC 5 cut(s) 20, 94, 331, 532, 949
MboII GAAGA 6 cut(s) 158, 223, 277, 425, 1022, 1097
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 7 cut(s) 189, 243, 270, 775, 781, 793, 1118
MlyI GAGTC 1 cut(s) 533
MnlI CCTC 5 cut(s) 377, 531, 698, 810, 912
Mph1103I ATGCAT 1 cut(s) 1029
MseI TTAA 1 cut(s) 1193
MslI CAYNNNNRTG 1 cut(s) 726
MspA1I CMGCKG 2 cut(s) 400, 1113
MspI CCGG 3 cut(s) 275, 438, 628
MspR9I CCNGG 4 cut(s) 276, 438, 512, 965
Mva1269I GAATGC 2 cut(s) 594, 655
MvaI CCWGG 2 cut(s) 512, 965
MvnI CGCG 1 cut(s) 1205
MwoI GCNNNNNNNGC 3 cut(s) 35, 172, 993
NciI CCSGG 2 cut(s) 276, 438
NdeI CATATG 1 cut(s) 62
NdeII GATC 5 cut(s) 20, 94, 331, 532, 949
NlaIII CATG 5 cut(s) 203, 725, 838, 1072, 1190
NlaIV GGNNCC 3 cut(s) 280, 281, 534
NmuCI GTSAC 3 cut(s) 440, 504, 1036
NsiI ATGCAT 1 cut(s) 1029
NspI RCATGY 2 cut(s) 838, 1190
NspV TTCGAA 1 cut(s) 779
PaeI GCATGC 1 cut(s) 1190
PagI TCATGA 1 cut(s) 721
PciI ACATGT 1 cut(s) 834
PciSI GCTCTTC 1 cut(s) 438
PcsI WCGNNNNNNNCGW 3 cut(s) 123, 258, 1202
PctI GAATGC 2 cut(s) 594, 655
PfeI GAWTC 3 cut(s) 114, 671, 1088
PkrI GCNGC 7 cut(s) 37, 197, 257, 260, 402, 986, 1161
Ple19I CGATCG 2 cut(s) 97, 334
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
PscI ACATGT 1 cut(s) 834
PsiI TTATAA 1 cut(s) 1149
Psp6I CCWGG 2 cut(s) 510, 963
PspEI GGTNACC 1 cut(s) 504
PspFI CCCAGC 1 cut(s) 1198
PspGI CCWGG 2 cut(s) 510, 963
PspN4I GGNNCC 3 cut(s) 280, 281, 534
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 4 cut(s) 279, 280, 514, 858
PsrI GAACNNNNNNTAC 2 cut(s) 951, 983
PsuI RGATCY 1 cut(s) 532
PvuI CGATCG 2 cut(s) 97, 334
PvuII CAGCTG 1 cut(s) 1113
RsaI GTAC 3 cut(s) 67, 666, 1052
RsaNI GTAC 3 cut(s) 66, 665, 1051
RseI CAYNNNNRTG 1 cut(s) 726
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 1 cut(s) 1193
SatI GCNGC 7 cut(s) 36, 196, 256, 259, 401, 985, 1160
Sau3AI GATC 5 cut(s) 20, 94, 331, 532, 949
Sau96I GGNCC 4 cut(s) 279, 280, 514, 858
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 4 cut(s) 276, 438, 512, 965
SduI GDGCHC 1 cut(s) 283
SfaNI GCATC 2 cut(s) 149, 1014
SfcI CTRYAG 1 cut(s) 550
SfuI TTCGAA 1 cut(s) 779
SinI GGWCC 1 cut(s) 858
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SpeI ACTAGT 1 cut(s) 823
SphI GCATGC 1 cut(s) 1190
Sse9I AATT 7 cut(s) 189, 243, 270, 775, 781, 793, 1118
SsiI CCGC 6 cut(s) 14, 35, 195, 255, 258, 398
SspMI CTAG 7 cut(s) 26, 32, 404, 716, 807, 824, 944
StyD4I CCNGG 4 cut(s) 274, 436, 510, 963
TaaI ACNGT 2 cut(s) 728, 874
TaiI ACGT 1 cut(s) 610
TaqI TCGA 4 cut(s) 93, 117, 703, 779
TaqII GACCGA 1 cut(s) 875
TasI AATT 7 cut(s) 189, 243, 270, 775, 781, 793, 1118
TatI WGTACW 2 cut(s) 664, 1050
TauI GCSGC 4 cut(s) 38, 198, 258, 261
TfiI GAWTC 3 cut(s) 114, 671, 1088
Tru1I TTAA 1 cut(s) 1193
Tru9I TTAA 1 cut(s) 1193
TscAI CASTG 1 cut(s) 1003
TseFI GTSAC 3 cut(s) 440, 504, 1036
TseI GCWGC 3 cut(s) 400, 984, 1159
Tsp45I GTSAC 3 cut(s) 440, 504, 1036
TspDTI ATGAA 7 cut(s) 201, 367, 428, 464, 710, 733, 1085
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 1003
VpaK11BI GGWCC 1 cut(s) 858
XagI CCTNNNNNAGG 1 cut(s) 378
XapI RAATTY 3 cut(s) 243, 270, 775
XceI RCATGY 2 cut(s) 838, 1190
XmiI GTMKAC 1 cut(s) 828
XspI CTAG 7 cut(s) 26, 32, 404, 716, 807, 824, 944
Zsp2I ATGCAT 1 cut(s) 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.