Rh6BG299700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015632
Physical Location & Seq
Reverse (-)
52888887 .. 52889324
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG299700.1

Sequence Viewer

Length: 438 bp
ATGTCCAAGGATTATGGTTCTTGGACCGATGTAGCAACTGTGGAACTGCCATTTACGGATGAGTTGCCTCCCAAATTTCAAGAACCAGTAAGCTATAACTTTGTTAGTCTAGGAGATCAAAGAGTATGCCTGGTTCTGGCTACATTTAGGACTGGCGATCCTGCAGAAAGTGAGAAGATGAGTTTTCTTGTGACAACATTCAAGTACAAAATTGAAACTCCCATGAAAAGGACAAGGGAAGAATCACCCATTTCCTTTTCTTTCAGCTGTCAATTCCTGAGTAATCCTGTCATCTTTGAATATAATGTCCAGCAGCATACTCCATCTCCTGCAATCTTGCATGCTGTTATGCGGGGCGCGTTTGTGCTAGTGTTTTTAATTAAGCCTTGCTTAACGTTGATGATAATTGTGCTTGCCTTTGTGTATGTTGATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.52

Weight (kDa)

5.32

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 359
AciI CCGC 1 cut(s) 352
AclI AACGTT 1 cut(s) 395
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 136, 228
AgsI TTSAA 4 cut(s) 80, 202, 215, 299
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 2 cut(s) 93, 267
AluI AGCT 2 cut(s) 93, 267
AlwI GGATC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 313
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 237
AvaII GGWCC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 325
BccI CCATC 1 cut(s) 331
BciT130I CCWGG 1 cut(s) 131
BfaI CTAG 2 cut(s) 110, 368
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 6
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 228
Bse1I ACTGG 2 cut(s) 86, 157
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 136, 228
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 86, 157
BseXI GCAGC 1 cut(s) 325
Bsh1236I CGCG 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 136, 228
Bsp143I GATC 2 cut(s) 115, 157
BspACI CCGC 1 cut(s) 352
BspCNI CTCAG 1 cut(s) 270
BspFNI CGCG 1 cut(s) 359
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 152
BsrI ACTGG 2 cut(s) 86, 157
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 2 cut(s) 115, 157
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 342, 414
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 359
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 2 cut(s) 118, 160
BstMBI GATC 2 cut(s) 115, 157
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 325
BtsCI GGATG 1 cut(s) 64
Cac8I GCNNGC 2 cut(s) 342, 414
CfoI GCGC 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 205
CviAII CATG 2 cut(s) 223, 341
CviJI RGCY 4 cut(s) 93, 140, 267, 385
CviKI_1 RGCY 4 cut(s) 93, 140, 267, 385
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 278
DpnI GATC 2 cut(s) 117, 159
DpnII GATC 2 cut(s) 115, 157
Eco130I CCWWGG 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 226, 344
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FatI CATG 2 cut(s) 222, 340
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 2 cut(s) 110, 368
GlaI GCGC 1 cut(s) 358
GluI GCNGC 1 cut(s) 314
HhaI GCGC 1 cut(s) 359
Hin1II CATG 2 cut(s) 226, 344
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HinfI GANTC 1 cut(s) 242
HphI GGTGA 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 80, 277
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 3 cut(s) 164, 332, 340
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 395
Hsp92II CATG 2 cut(s) 226, 344
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 115, 157
Lsp1109I GCAGC 1 cut(s) 325
MaeI CTAG 2 cut(s) 110, 368
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 117, 159
MboI GATC 2 cut(s) 115, 157
MboII GAAGA 2 cut(s) 187, 251
MluCI AATT 5 cut(s) 74, 210, 272, 378, 405
MnlI CCTC 1 cut(s) 78
MseI TTAA 3 cut(s) 377, 381, 392
MspA1I CMGCKG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 359
NdeII GATC 2 cut(s) 115, 157
NlaIII CATG 2 cut(s) 226, 344
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 344
PacI TTAATTAA 1 cut(s) 381
PaeI GCATGC 1 cut(s) 344
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 315
Psp1406I AACGTT 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspPI GGNCC 1 cut(s) 24
PsrI GAACNNNNNNTAC 2 cut(s) 117, 149
PstI CTGCAG 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 267
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 3 cut(s) 377, 381, 392
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 2 cut(s) 115, 157
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 131
SetI ASST 3 cut(s) 95, 269, 398
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 24
SphI GCATGC 1 cut(s) 344
Sse9I AATT 5 cut(s) 74, 210, 272, 378, 405
SsiI CCGC 1 cut(s) 352
SspMI CTAG 2 cut(s) 110, 368
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 1 cut(s) 398
TaqII GACCGA 1 cut(s) 41
TasI AATT 5 cut(s) 74, 210, 272, 378, 405
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 3 cut(s) 377, 381, 392
Tru9I TTAA 3 cut(s) 377, 381, 392
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 239
TspGWI ACGGA 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 344
XspI CTAG 2 cut(s) 110, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.