Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015632

Physical Location & Seq

Genomic Coordinates Reverse (-)

86194473 .. 86195708

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036892

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGAGATGGTAGCGGGTTCCGTCGATAGCGCCATGTCGGAACGATTCCTAGCGGCTATGGAGGGTAAGTATCTCTACATATGTACCCGTGAATCGCACAGATCTCTTCCCGATCGGTGGGTTGTTCACCGAATCGAAATGAGCGATGTGTTGTCTGCATCGGAAGACCATATTCGTTATCTTCCTTTCAAGCAAGTGGCTAATGAAATTGGCGACGGTGACTTTCCGTATATGGTGGGTTGTGGTGTCTTCAAATCCAAAATTCTCATCGGCGGCGGCCTGAAGAAGAGGAAAGCTCCGGTGTTCCCTCCGCCTCCGTCTTCATCTGTGTATTTTTTTGAGACAGACACAACCGATGGGAAACTCGATCAGAAACTCAAGTTGGAGAGCTTTCCCCCTTTCGTAGGAGGGATGGCTCAACCCCTGCTAGTGGAGATGAAGGGGCAACTTTATGCTCTTGCCGGTGACCTGATAAAGTTGAGATACGATAGCCCTTTTGAGAGATTTGACCCGTCCTGCGAAGAATGGTCACCCCTGCCCCGACCTCCTATTTGGGATCCTGACTCTCCATTCTATAGGGCTGCCCTCGGCTCAGGTTATGTAATTACAGACACCAGCATTCTTTTCTCACTTCAGGCTACCCCGGTGTTCAGGTTTGACATCACGAAGCCGGATGCAGGATGGTCCGTACAGCAATCCCTGTGTTCTGGAAAATCTTTTCCCTTTGAAGGCACAACTCTAGTTCATGACTGTGTTTATGGTGGTTTCATTATCTTTGCCATAGATATTGAGCCAGAAAATTCGAATTATGATGGGAAGTGGCCTCAAACTAGATTTCCAAGAATACTAGTCTACTACATGTCCGAAGATTATGGTTCTTGGACTGATGTAACAACTGTGGAACTGCCCTTTACACAGGAGTTGCCTCGCATATTTCAAGAACCAGTAAGCTATAACTTCGTTAGTCTAGGAGATCAAAGAGTATGCCTGGTTCTGGCTACATTTAGCACTTCAAGAAACAGTGGCGTTCCTGTAGGAAATGAGAAGATGAGTTTTCTTGTGACAACATTCAAGTACGAAATTGAAACTCCCATGAAAAGAACAACGGAAGAATCACCCATTTCCTTTCATTTCAACCATGAATTCCTGAGTAAGCCTGTCATCTTTGAATATAATGTCCAGAATCCATCTCCTGCAATCCCGAATGCTGTTATGCCGGGCGCGTTTGTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

412

Amino Acids

46.34

Weight (kDa)

5.04

Isoelectric Point (pI)

60.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21171
rosa_laevigata	RLG00000008636 RLG00000012538 RLG00000012539 RLG00000012540 RLG00000012541 RLG00000036892
rosa_multiflora	Rmu_sc0007546.1_g000019
rosa_roxburghii	Rroxscaffold_7G00181990
rosa_rugosa	Rorug06G0182900
rosa_samantha	Rh6BG299700 Rh6BG299800 Rh6BG299900 Rh6DG291400
rosa_wichuraiana	Rw6G025450 Rw6G025460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	852
AccII	CGCG	1 cut(s)	1223
AciI	CCGC	5 cut(s)	14, 53, 273, 276, 311
AclWI	GGATC	2 cut(s)	551, 564
AcsI	RAATTY	3 cut(s)	261, 799, 1142
AcuI	CTGAAG	2 cut(s)	302, 617
AfaI	GTAC	3 cut(s)	85, 690, 1076
AfiI	CCNNNNNNNGG	6 cut(s)	117, 404, 430, 677, 728, 994
AflIII	ACRYGT	1 cut(s)	858
AgsI	TTSAA	9 cut(s)	190, 253, 728, 938, 1014, 1072, 1085, 1135, 1169
AhlI	ACTAGT	1 cut(s)	847
AjnI	CCWGG	1 cut(s)	987
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	3 cut(s)	296, 390, 951
AluI	AGCT	3 cut(s)	296, 390, 951
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	2 cut(s)	551, 564
AoxI	GGCC	2 cut(s)	277, 821
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	3 cut(s)	261, 799, 1142
ArsI	GACNNNNNNTTYG	2 cut(s)	534, 566
AspLEI	GCGC	2 cut(s)	32, 1223
AspS9I	GGNCC	1 cut(s)	684
AsuC2I	CCSGG	2 cut(s)	644, 1218
AsuHPI	GGTGA	5 cut(s)	119, 230, 476, 522, 1107
AsuII	TTCGAA	1 cut(s)	803
AvaII	GGWCC	1 cut(s)	684
BaeI	ACNNNNGTAYC	2 cut(s)	67, 100
BamHI	GGATCC	1 cut(s)	556
BbsI	GAAGAC	3 cut(s)	171, 241, 312
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	5 cut(s)	350, 406, 675, 806, 1195
BciT130I	CCWGG	1 cut(s)	989
BcnI	CCSGG	2 cut(s)	644, 1218
BcoDI	GTCTC	1 cut(s)	335
BcuI	ACTAGT	1 cut(s)	847
BfaI	CTAG	6 cut(s)	50, 428, 740, 831, 848, 968
BfmI	CTRYAG	3 cut(s)	574, 1032, 1232
BfoI	RGCGCY	1 cut(s)	33
BglII	AGATCT	1 cut(s)	101
BisI	GCNGC	4 cut(s)	54, 274, 277, 582
BlsI	GCNGC	4 cut(s)	55, 275, 278, 583
Bme1390I	CCNGG	3 cut(s)	644, 989, 1218
Bme18I	GGWCC	1 cut(s)	684
BmgT120I	GGNCC	1 cut(s)	684
BmiI	GGNNCC	2 cut(s)	19, 558
BmrFI	CCNGG	3 cut(s)	644, 989, 1218
BmsI	GCATC	2 cut(s)	167, 664
BpiI	GAAGAC	3 cut(s)	171, 241, 312
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
Bpu10I	CCTNAGC	1 cut(s)	592
Bpu14I	TTCGAA	1 cut(s)	803
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	2 cut(s)	644, 1218
BsaJI	CCNNGG	2 cut(s)	586, 642
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	6 cut(s)	117, 404, 430, 677, 728, 994
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	944
BseBI	CCWGG	1 cut(s)	989
BseDI	CCNNGG	2 cut(s)	586, 642
BseGI	GGATG	3 cut(s)	417, 679, 686
BseLI	CCNNNNNNNGG	6 cut(s)	117, 404, 430, 677, 728, 994
BseMII	CTCAG	2 cut(s)	606, 1139
BseNI	ACTGG	1 cut(s)	944
BseXI	GCAGC	1 cut(s)	568
Bsh1236I	CGCG	1 cut(s)	1223
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	279, 823
BsiEI	CGRYCG	1 cut(s)	115
BsiSI	CCGG	5 cut(s)	299, 462, 644, 671, 1217
BslI	CCNNNNNNNGG	6 cut(s)	117, 404, 430, 677, 728, 994
BsmAI	GTCTC	1 cut(s)	335
BsmI	GAATGC	2 cut(s)	618, 1210
BsnI	GGCC	2 cut(s)	279, 823
Bsp119I	TTCGAA	1 cut(s)	803
Bsp143I	GATC	5 cut(s)	101, 112, 367, 556, 973
BspACI	CCGC	5 cut(s)	14, 53, 273, 276, 311
BspANI	GGCC	2 cut(s)	279, 823
BspCNI	CTCAG	2 cut(s)	605, 1140
BspFNI	CGCG	1 cut(s)	1223
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	2 cut(s)	19, 558
BspPI	GGATC	2 cut(s)	551, 564
BspT104I	TTCGAA	1 cut(s)	803
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	1 cut(s)	944
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	2 cut(s)	586, 642
BssMI	GATC	5 cut(s)	101, 112, 367, 556, 973
Bst2UI	CCWGG	1 cut(s)	989
Bst4CI	ACNGT	4 cut(s)	218, 752, 898, 1022
Bst6I	CTCTTC	2 cut(s)	111, 281
BstBI	TTCGAA	1 cut(s)	803
BstDEI	CTNAG	2 cut(s)	592, 1148
BstEII	GGTNACC	2 cut(s)	464, 528
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstF5I	GGATG	3 cut(s)	417, 679, 686
BstFNI	CGCG	1 cut(s)	1223
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	32, 1223
BstKTI	GATC	5 cut(s)	104, 115, 370, 559, 976
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	5 cut(s)	101, 112, 367, 556, 973
BstMCI	CGRYCG	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	989
BstNSI	RCATGY	1 cut(s)	862
BstPI	GGTNACC	2 cut(s)	464, 528
BstSCI	CCNGG	3 cut(s)	642, 987, 1216
BstSFI	CTRYAG	3 cut(s)	574, 1032, 1232
BstUI	CGCG	1 cut(s)	1223
BstV1I	GCAGC	1 cut(s)	568
BstV2I	GAAGAC	3 cut(s)	171, 241, 312
BstX2I	RGATCY	2 cut(s)	101, 556
BstYI	RGATCY	2 cut(s)	101, 556
BsuRI	GGCC	2 cut(s)	279, 823
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	417, 679, 686
BtsIMutI	CAGTG	1 cut(s)	1027
CciI	TCATGA	1 cut(s)	745
CfoI	GCGC	2 cut(s)	32, 1223
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	684
Csp6I	GTAC	3 cut(s)	84, 689, 1075
CviAII	CATG	5 cut(s)	34, 746, 859, 1093, 1139
CviQI	GTAC	3 cut(s)	84, 689, 1075
DdeI	CTNAG	2 cut(s)	592, 1148
DpnI	GATC	5 cut(s)	103, 114, 369, 558, 975
DpnII	GATC	5 cut(s)	101, 112, 367, 556, 973
Eam1104I	CTCTTC	2 cut(s)	111, 281
EarI	CTCTTC	2 cut(s)	111, 281
EciI	GGCGGA	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	684
Eco57I	CTGAAG	2 cut(s)	302, 617
Eco91I	GGTNACC	2 cut(s)	464, 528
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoO65I	GGTNACC	2 cut(s)	464, 528
EcoRI	GAATTC	1 cut(s)	1142
EcoRII	CCWGG	1 cut(s)	987
FaeI	CATG	5 cut(s)	37, 749, 862, 1096, 1142
FatI	CATG	5 cut(s)	33, 745, 858, 1092, 1138
FauI	CCCGC	1 cut(s)	7
FauNDI	CATATG	1 cut(s)	80
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	4 cut(s)	54, 274, 277, 582
FokI	GGATG	3 cut(s)	424, 686, 693
Fsp4HI	GCNGC	4 cut(s)	54, 274, 277, 582
FspBI	CTAG	6 cut(s)	50, 428, 740, 831, 848, 968
GlaI	GCGC	2 cut(s)	31, 1222
GluI	GCNGC	4 cut(s)	54, 274, 277, 582
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	279, 823
HapII	CCGG	5 cut(s)	299, 462, 644, 671, 1217
HhaI	GCGC	2 cut(s)	32, 1223
Hin1II	CATG	5 cut(s)	37, 749, 862, 1096, 1142
Hin6I	GCGC	2 cut(s)	30, 1221
HinP1I	GCGC	2 cut(s)	30, 1221
HinfI	GANTC	6 cut(s)	45, 92, 132, 563, 1112, 1183
HpaII	CCGG	5 cut(s)	299, 462, 644, 671, 1217
HphI	GGTGA	5 cut(s)	119, 230, 476, 522, 1107
Hpy166II	GTNNAC	2 cut(s)	127, 853
Hpy188I	TCNGA	4 cut(s)	40, 163, 372, 865
Hpy8I	GTNNAC	2 cut(s)	127, 853
Hpy99I	CGWCG	2 cut(s)	26, 218
HpyAV	CCTTC	2 cut(s)	433, 722
HpyCH4III	ACNGT	4 cut(s)	218, 752, 898, 1022
HpyCH4V	TGCA	3 cut(s)	158, 677, 1196
HpyF3I	CTNAG	2 cut(s)	592, 1148
Hsp92II	CATG	5 cut(s)	37, 749, 862, 1096, 1142
HspAI	GCGC	2 cut(s)	30, 1221
Kzo9I	GATC	5 cut(s)	101, 112, 367, 556, 973
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	1 cut(s)	568
LweI	GCATC	2 cut(s)	167, 664
MaeI	CTAG	6 cut(s)	50, 428, 740, 831, 848, 968
MaeIII	GTNAC	5 cut(s)	218, 464, 528, 889, 1060
MalI	GATC	5 cut(s)	103, 114, 369, 558, 975
MboI	GATC	5 cut(s)	101, 112, 367, 556, 973
MflI	RGATCY	2 cut(s)	101, 556
MluCI	AATT	7 cut(s)	207, 261, 603, 799, 805, 1080, 1142
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	2 cut(s)	18, 363
MnlI	CCTC	9 cut(s)	55, 282, 318, 324, 401, 555, 596, 834, 936
MslI	CAYNNNNRTG	1 cut(s)	750
MspI	CCGG	5 cut(s)	299, 462, 644, 671, 1217
MspR9I	CCNGG	3 cut(s)	644, 989, 1218
Mva1269I	GAATGC	2 cut(s)	618, 1210
MvaI	CCWGG	1 cut(s)	989
MvnI	CGCG	1 cut(s)	1223
NciI	CCSGG	2 cut(s)	644, 1218
NdeI	CATATG	1 cut(s)	80
NdeII	GATC	5 cut(s)	101, 112, 367, 556, 973
NlaIII	CATG	5 cut(s)	37, 749, 862, 1096, 1142
NlaIV	GGNNCC	2 cut(s)	19, 558
NmeAIII	GCCGAG	1 cut(s)	567
NmuCI	GTSAC	4 cut(s)	218, 464, 528, 1060
NspI	RCATGY	1 cut(s)	862
NspV	TTCGAA	1 cut(s)	803
PagI	TCATGA	1 cut(s)	745
PciI	ACATGT	1 cut(s)	858
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	2 cut(s)	618, 1210
PfeI	GAWTC	5 cut(s)	45, 92, 132, 1112, 1183
PkrI	GCNGC	4 cut(s)	55, 275, 278, 583
Ple19I	CGATCG	1 cut(s)	115
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
PscI	ACATGT	1 cut(s)	858
Psp6I	CCWGG	1 cut(s)	987
PspEI	GGTNACC	2 cut(s)	464, 528
PspGI	CCWGG	1 cut(s)	987
PspN4I	GGNNCC	2 cut(s)	19, 558
PspPI	GGNCC	1 cut(s)	684
PsrI	GAACNNNNNNTAC	2 cut(s)	975, 1007
PsuI	RGATCY	2 cut(s)	101, 556
PvuI	CGATCG	1 cut(s)	115
RsaI	GTAC	3 cut(s)	85, 690, 1076
RsaNI	GTAC	3 cut(s)	84, 689, 1075
RseI	CAYNNNNRTG	1 cut(s)	750
SatI	GCNGC	4 cut(s)	54, 274, 277, 582
Sau3AI	GATC	5 cut(s)	101, 112, 367, 556, 973
Sau96I	GGNCC	1 cut(s)	684
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	3 cut(s)	644, 989, 1218
SetI	ASST	7 cut(s)	298, 392, 471, 547, 598, 656, 953
SfaNI	GCATC	2 cut(s)	167, 664
SfcI	CTRYAG	3 cut(s)	574, 1032, 1232
SfuI	TTCGAA	1 cut(s)	803
SinI	GGWCC	1 cut(s)	684
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SpeI	ACTAGT	1 cut(s)	847
Sse9I	AATT	7 cut(s)	207, 261, 603, 799, 805, 1080, 1142
SsiI	CCGC	5 cut(s)	14, 53, 273, 276, 311
SspMI	CTAG	6 cut(s)	50, 428, 740, 831, 848, 968
StyD4I	CCNGG	3 cut(s)	642, 987, 1216
TaaI	ACNGT	4 cut(s)	218, 752, 898, 1022
TaqI	TCGA	4 cut(s)	24, 135, 366, 803
TasI	AATT	7 cut(s)	207, 261, 603, 799, 805, 1080, 1142
TauI	GCSGC	3 cut(s)	56, 276, 279
TfiI	GAWTC	5 cut(s)	45, 92, 132, 1112, 1183
TscAI	CASTG	1 cut(s)	1027
TseFI	GTSAC	4 cut(s)	218, 464, 528, 1060
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	4 cut(s)	218, 464, 528, 1060
TspDTI	ATGAA	8 cut(s)	219, 312, 452, 734, 757, 1109, 1118, 1155
TspGWI	ACGGA	5 cut(s)	10, 216, 306, 676, 1121
TspRI	CASTG	1 cut(s)	1027
VpaK11BI	GGWCC	1 cut(s)	684
XagI	CCTNNNNNAGG	1 cut(s)	402
XapI	RAATTY	3 cut(s)	261, 799, 1142
XceI	RCATGY	1 cut(s)	862
XmiI	GTMKAC	1 cut(s)	852
XspI	CTAG	6 cut(s)	50, 428, 740, 831, 848, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.