Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015632

Physical Location & Seq

Genomic Coordinates Forward (+)

19724396 .. 19725607

Gene Structure 1212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012541

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGAGATGATAACCGAACGATCCGTAGCGGCGATGGTGAGTAAGTATCTCTACATATGTACCTGTGAAATGCACAAATCTGTTTTCGATCGGTGGGTTGTTCACCGAATCGAAATGAGCGATGTGTTATCTGCATCGGAAGACCATATTCGTTATCTGCCTTTCAAGCAAGTGGCTAATGAAATTGGCGGCCATGACCTTCCGTTGTTGGTGGGTTGTGGTGTCTTCAAATCCAAAATTCTCATCGGCGGCGGCGTGAAGAAAATTCCGGGGGCCCATCCGTCTCCAGCTTCGTCTGTTTATTTTTTTGAGACAGACACAACCTATCGGAAACTCGATCAGAAACTCAAGTTGGGGAGCTTTCCCACTTTCCTAGGAGGGAAAGCTCAACCCCTGCTAGTGGAGATGAAGGGGCAACTTTATGCTCTTGCCGGTGACGAGATGAAGTTGAGATACGATAGTCATTTTGAGAGATTTGACCCGTCCTGCGAAAAGTGGTCACCCCTGGCCCGACCTCCTATTTGGGATCCTGACTCTCCATACTGTAGGACTCCGGTCGGTTCAGGTTATGTAATCACAGACACCAGCATTCTTTTCTCACGTCAGGCTACCCCTGTTTTCCGGTTTGACTTCACGAATCCGAATGCAGGATGGTCTGTACAGGAATCTTTGTGTTCTGGAAAATCTTTTCCCTTTCGAGGCACAACTCTAGTTCATGACTGTGTTTATGGTGGTTTCATAATCTTTGCCATAGATATTGAGCCAGAAAATCCGAATTATGATGGGAAGAGGCCTCAAACTAGATTTCCAAGAATACTAGTCTTCCACATGTCCCAAGATTATGGTTCTTGGACCGATGTAGCAACTGTGGAACTGCCATTTACAAATGAGTTGCCTCTGATATTTCTTCAACCAGTCAGCTACAACTTTGTTAGTCTCGGAGATCAAAGAGTATGCCTGGTTCTGGCTACATTTAGCAGCCCAATAAGCAGTGGCCGTTGGGAAGAAAGTGAGATGATGCATTTTCTTGTGACAACATTCAAGTACAAAACTGAAACTCCCATGAAAAGAACAAGGGAAGAATCACCCATTTCCTTTTCTTTCAGCTGTCAATTCCTGAGTAATCCTGTCACCTTTGATTATAATATCCAGCAGCATACTCCATCTCCTGCAACCGAGCATGCCTTAACGCTGGGCGCGTTTTTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

404

Amino Acids

45.6

Weight (kDa)

6.14

Isoelectric Point (pI)

56.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21171
rosa_laevigata	RLG00000008636 RLG00000012538 RLG00000012539 RLG00000012540 RLG00000012541 RLG00000036892
rosa_multiflora	Rmu_sc0007546.1_g000019
rosa_roxburghii	Rroxscaffold_7G00181990
rosa_rugosa	Rorug06G0182900
rosa_samantha	Rh6BG299700 Rh6BG299800 Rh6BG299900 Rh6DG291400
rosa_wichuraiana	Rw6G025450 Rw6G025460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1143
AccII	CGCG	1 cut(s)	1199
AciI	CCGC	4 cut(s)	29, 189, 249, 252
AclWI	GGATC	3 cut(s)	15, 521, 534
AcoI	YGGCCR	2 cut(s)	190, 994
AcsI	RAATTY	2 cut(s)	237, 264
AfaI	GTAC	3 cut(s)	61, 660, 1046
AfiI	CCNNNNNNNGG	4 cut(s)	400, 647, 698, 964
AflIII	ACRYGT	1 cut(s)	828
AgsI	TTSAA	4 cut(s)	166, 229, 911, 1042
AhlI	ACTAGT	1 cut(s)	817
AjiI	CACGTC	1 cut(s)	602
AjnI	CCWGG	2 cut(s)	504, 957
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	5 cut(s)	290, 360, 386, 921, 1107
AluI	AGCT	5 cut(s)	290, 360, 386, 921, 1107
Alw26I	GTCTC	3 cut(s)	288, 305, 941
AlwI	GGATC	3 cut(s)	15, 521, 534
AoxI	GGCC	5 cut(s)	190, 273, 507, 791, 994
ApaI	GGGCCC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	978, 1153
ApoI	RAATTY	2 cut(s)	237, 264
ArsI	GACNNNNNNTTYG	2 cut(s)	504, 536
AspA2I	CCTAGG	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	1199
AspS9I	GGNCC	4 cut(s)	273, 274, 508, 852
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	6 cut(s)	49, 95, 446, 492, 1077, 1123
AvaII	GGWCC	1 cut(s)	852
AvrII	CCTAGG	1 cut(s)	373
BaeGI	GKGCMC	1 cut(s)	277
BaeI	ACNNNNGTAYC	4 cut(s)	43, 76, 445, 478
BamHI	GGATCC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	277
BarI	GAAGNNNNNNTAC	2 cut(s)	437, 469
BbsI	GAAGAC	3 cut(s)	147, 217, 814
BbvI	GCAGC	2 cut(s)	990, 1165
BccI	CCATC	5 cut(s)	28, 285, 645, 776, 1171
BceAI	ACGGC	1 cut(s)	981
BciT130I	CCWGG	2 cut(s)	506, 959
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	3 cut(s)	288, 305, 941
BcuI	ACTAGT	1 cut(s)	817
BfaI	CTAG	5 cut(s)	374, 398, 710, 801, 818
BfmI	CTRYAG	1 cut(s)	544
BisI	GCNGC	6 cut(s)	30, 190, 250, 253, 979, 1154
BlnI	CCTAGG	1 cut(s)	373
BlsI	GCNGC	6 cut(s)	31, 191, 251, 254, 980, 1155
Bme1390I	CCNGG	3 cut(s)	270, 506, 959
Bme18I	GGWCC	1 cut(s)	852
BmgBI	CACGTC	1 cut(s)	602
BmgT120I	GGNCC	4 cut(s)	273, 274, 508, 852
BmiI	GGNNCC	3 cut(s)	274, 275, 528
BmrFI	CCNGG	3 cut(s)	270, 506, 959
BmsI	GCATC	2 cut(s)	143, 1008
BoxI	GACNNNNGTC	1 cut(s)	554
BpiI	GAAGAC	3 cut(s)	147, 217, 814
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	269, 373, 504
BsaWI	WCCGGW	2 cut(s)	553, 621
BsaXI	ACNNNNNCTCC	4 cut(s)	1042, 1072, 1150, 1180
Bsc4I	CCNNNNNNNGG	4 cut(s)	400, 647, 698, 964
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	914
BseBI	CCWGG	2 cut(s)	506, 959
BseDI	CCNNGG	3 cut(s)	269, 373, 504
BseGI	GGATG	2 cut(s)	277, 656
BseLI	CCNNNNNNNGG	4 cut(s)	400, 647, 698, 964
BseMII	CTCAG	1 cut(s)	1109
BseNI	ACTGG	1 cut(s)	914
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	990, 1165
BseYI	CCCAGC	1 cut(s)	1192
Bsh1236I	CGCG	1 cut(s)	1199
Bsh1285I	CGRYCG	2 cut(s)	91, 558
BshFI	GGCC	5 cut(s)	192, 275, 509, 793, 996
BsiEI	CGRYCG	2 cut(s)	91, 558
BsiSI	CCGG	4 cut(s)	269, 432, 554, 622
BslFI	GGGAC	1 cut(s)	817
BslI	CCNNNNNNNGG	4 cut(s)	400, 647, 698, 964
BsmAI	GTCTC	3 cut(s)	288, 305, 941
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	817
BsmI	GAATGC	2 cut(s)	588, 649
BsnI	GGCC	5 cut(s)	192, 275, 509, 793, 996
Bsp120I	GGGCCC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp1407I	TGTACA	1 cut(s)	658
Bsp143I	GATC	5 cut(s)	20, 88, 337, 526, 943
BspACI	CCGC	4 cut(s)	29, 189, 249, 252
BspANI	GGCC	5 cut(s)	192, 275, 509, 793, 996
BspCNI	CTCAG	1 cut(s)	1110
BspFNI	CGCG	1 cut(s)	1199
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	3 cut(s)	274, 275, 528
BspPI	GGATC	3 cut(s)	15, 521, 534
BsrFI	RCCGGY	1 cut(s)	431
BsrGI	TGTACA	1 cut(s)	658
BsrI	ACTGG	1 cut(s)	914
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	3 cut(s)	269, 373, 504
BssMI	GATC	5 cut(s)	20, 88, 337, 526, 943
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	2 cut(s)	506, 959
Bst4CI	ACNGT	3 cut(s)	545, 722, 868
Bst6I	CTCTTC	1 cut(s)	782
BstAUI	TGTACA	1 cut(s)	658
BstC8I	GCNNGC	1 cut(s)	1182
BstDEI	CTNAG	1 cut(s)	1118
BstEII	GGTNACC	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	277, 656
BstFNI	CGCG	1 cut(s)	1199
BstHHI	GCGC	1 cut(s)	1199
BstKTI	GATC	5 cut(s)	23, 91, 340, 529, 946
BstMAI	GTCTC	3 cut(s)	288, 305, 941
BstMBI	GATC	5 cut(s)	20, 88, 337, 526, 943
BstMCI	CGRYCG	2 cut(s)	91, 558
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 987
BstNI	CCWGG	2 cut(s)	506, 959
BstNSI	RCATGY	2 cut(s)	832, 1184
BstPAI	GACNNNNGTC	1 cut(s)	554
BstPI	GGTNACC	1 cut(s)	498
BstSCI	CCNGG	3 cut(s)	268, 504, 957
BstSFI	CTRYAG	1 cut(s)	544
BstSLI	GKGCMC	1 cut(s)	277
BstUI	CGCG	1 cut(s)	1199
BstV1I	GCAGC	2 cut(s)	990, 1165
BstV2I	GAAGAC	3 cut(s)	147, 217, 814
BstX2I	RGATCY	1 cut(s)	526
BstXI	CCANNNNNNTGG	1 cut(s)	842
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	5 cut(s)	192, 275, 509, 793, 996
BtgZI	GCGATG	2 cut(s)	47, 135
BtrI	CACGTC	1 cut(s)	602
BtsCI	GGATG	2 cut(s)	277, 656
BtsI	GCAGTG	1 cut(s)	997
BtsIMutI	CAGTG	1 cut(s)	997
Cac8I	GCNNGC	1 cut(s)	1182
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	1 cut(s)	1199
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	4 cut(s)	273, 274, 508, 852
Csp6I	GTAC	3 cut(s)	60, 659, 1045
CviAII	CATG	5 cut(s)	194, 716, 829, 1063, 1181
CviQI	GTAC	3 cut(s)	60, 659, 1045
DdeI	CTNAG	1 cut(s)	1118
DpnI	GATC	5 cut(s)	22, 90, 339, 528, 945
DpnII	GATC	5 cut(s)	20, 88, 337, 526, 943
EaeI	YGGCCR	2 cut(s)	190, 994
Eam1104I	CTCTTC	1 cut(s)	782
EarI	CTCTTC	1 cut(s)	782
Eco130I	CCWWGG	1 cut(s)	373
Eco147I	AGGCCT	1 cut(s)	793
Eco24I	GRGCYC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	852
Eco91I	GGTNACC	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	273
EcoO65I	GGTNACC	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	504, 957
EcoT14I	CCWWGG	1 cut(s)	373
EcoT22I	ATGCAT	1 cut(s)	1023
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	288
FaeI	CATG	5 cut(s)	197, 719, 832, 1066, 1184
FaqI	GGGAC	1 cut(s)	817
FatI	CATG	5 cut(s)	193, 715, 828, 1062, 1180
FauNDI	CATATG	1 cut(s)	56
Fnu4HI	GCNGC	6 cut(s)	30, 190, 250, 253, 979, 1154
FokI	GGATG	2 cut(s)	264, 663
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	6 cut(s)	30, 190, 250, 253, 979, 1154
FspBI	CTAG	5 cut(s)	374, 398, 710, 801, 818
GlaI	GCGC	1 cut(s)	1198
GluI	GCNGC	6 cut(s)	30, 190, 250, 253, 979, 1154
GsaI	CCCAGC	1 cut(s)	1196
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	5 cut(s)	192, 275, 509, 793, 996
HapII	CCGG	4 cut(s)	269, 432, 554, 622
HhaI	GCGC	1 cut(s)	1199
Hin1II	CATG	5 cut(s)	197, 719, 832, 1066, 1184
Hin6I	GCGC	1 cut(s)	1197
HinP1I	GCGC	1 cut(s)	1197
HinfI	GANTC	6 cut(s)	108, 533, 550, 637, 665, 1082
HpaII	CCGG	4 cut(s)	269, 432, 554, 622
HphI	GGTGA	6 cut(s)	49, 95, 446, 492, 1077, 1123
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	7 cut(s)	139, 330, 342, 642, 774, 900, 941
Hpy188III	TCNNGA	5 cut(s)	530, 634, 678, 716, 1117
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	209, 403
HpyCH4III	ACNGT	3 cut(s)	545, 722, 868
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	5 cut(s)	73, 134, 647, 1021, 1172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 987
HpyF3I	CTNAG	1 cut(s)	1118
HpySE526I	ACGT	1 cut(s)	601
Hsp92II	CATG	5 cut(s)	197, 719, 832, 1066, 1184
HspAI	GCGC	1 cut(s)	1197
Kzo9I	GATC	5 cut(s)	20, 88, 337, 526, 943
LmnI	GCTCC	1 cut(s)	357
Lsp1109I	GCAGC	2 cut(s)	990, 1165
LweI	GCATC	2 cut(s)	143, 1008
MaeI	CTAG	5 cut(s)	374, 398, 710, 801, 818
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	4 cut(s)	434, 498, 1030, 1129
MalI	GATC	5 cut(s)	22, 90, 339, 528, 945
MboI	GATC	5 cut(s)	20, 88, 337, 526, 943
MboII	GAAGA	8 cut(s)	152, 217, 271, 799, 814, 899, 1016, 1091
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	5 cut(s)	183, 237, 264, 775, 1112
MlyI	GAGTC	2 cut(s)	527, 544
MnlI	CCTC	6 cut(s)	371, 525, 692, 783, 804, 906
Mph1103I	ATGCAT	1 cut(s)	1023
MseI	TTAA	1 cut(s)	1187
MslI	CAYNNNNRTG	1 cut(s)	720
MspA1I	CMGCKG	1 cut(s)	1107
MspI	CCGG	4 cut(s)	269, 432, 554, 622
MspR9I	CCNGG	3 cut(s)	270, 506, 959
Mva1269I	GAATGC	2 cut(s)	588, 649
MvaI	CCWGG	2 cut(s)	506, 959
MvnI	CGCG	1 cut(s)	1199
MwoI	GCNNNNNNNGC	2 cut(s)	166, 987
NciI	CCSGG	1 cut(s)	270
NdeI	CATATG	1 cut(s)	56
NdeII	GATC	5 cut(s)	20, 88, 337, 526, 943
NlaIII	CATG	5 cut(s)	197, 719, 832, 1066, 1184
NlaIV	GGNNCC	3 cut(s)	274, 275, 528
NmuCI	GTSAC	4 cut(s)	434, 498, 1030, 1129
NsiI	ATGCAT	1 cut(s)	1023
NspI	RCATGY	2 cut(s)	832, 1184
PaeI	GCATGC	1 cut(s)	1184
PagI	TCATGA	1 cut(s)	715
PceI	AGGCCT	1 cut(s)	793
PciI	ACATGT	1 cut(s)	828
PcsI	WCGNNNNNNNCGW	3 cut(s)	117, 252, 1196
PctI	GAATGC	2 cut(s)	588, 649
PfeI	GAWTC	4 cut(s)	108, 637, 665, 1082
PkrI	GCNGC	6 cut(s)	31, 191, 251, 254, 980, 1155
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	2 cut(s)	527, 544
PpsI	GAGTC	2 cut(s)	527, 544
PscI	ACATGT	1 cut(s)	828
PshAI	GACNNNNGTC	1 cut(s)	554
PsiI	TTATAA	1 cut(s)	1143
Psp6I	CCWGG	2 cut(s)	504, 957
PspEI	GGTNACC	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	1192
PspGI	CCWGG	2 cut(s)	504, 957
PspN4I	GGNNCC	3 cut(s)	274, 275, 528
PspOMI	GGGCCC	1 cut(s)	273
PspPI	GGNCC	4 cut(s)	273, 274, 508, 852
PsrI	GAACNNNNNNTAC	2 cut(s)	945, 977
PsuI	RGATCY	1 cut(s)	526
PvuI	CGATCG	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	1107
RsaI	GTAC	3 cut(s)	61, 660, 1046
RsaNI	GTAC	3 cut(s)	60, 659, 1045
RseI	CAYNNNNRTG	1 cut(s)	720
SaqAI	TTAA	1 cut(s)	1187
SatI	GCNGC	6 cut(s)	30, 190, 250, 253, 979, 1154
Sau3AI	GATC	5 cut(s)	20, 88, 337, 526, 943
Sau96I	GGNCC	4 cut(s)	273, 274, 508, 852
SchI	GAGTC	2 cut(s)	527, 544
ScrFI	CCNGG	3 cut(s)	270, 506, 959
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	2 cut(s)	143, 1008
SfcI	CTRYAG	1 cut(s)	544
SinI	GGWCC	1 cut(s)	852
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SpeI	ACTAGT	1 cut(s)	817
SphI	GCATGC	1 cut(s)	1184
Sse9I	AATT	5 cut(s)	183, 237, 264, 775, 1112
SseBI	AGGCCT	1 cut(s)	793
SsiI	CCGC	4 cut(s)	29, 189, 249, 252
SspMI	CTAG	5 cut(s)	374, 398, 710, 801, 818
StuI	AGGCCT	1 cut(s)	793
StyD4I	CCNGG	3 cut(s)	268, 504, 957
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	3 cut(s)	545, 722, 868
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	4 cut(s)	87, 111, 336, 697
TaqII	GACCGA	1 cut(s)	869
TasI	AATT	5 cut(s)	183, 237, 264, 775, 1112
TatI	WGTACW	2 cut(s)	658, 1044
TauI	GCSGC	4 cut(s)	32, 192, 252, 255
TfiI	GAWTC	4 cut(s)	108, 637, 665, 1082
Tru1I	TTAA	1 cut(s)	1187
Tru9I	TTAA	1 cut(s)	1187
TscAI	CASTG	1 cut(s)	997
TseFI	GTSAC	4 cut(s)	434, 498, 1030, 1129
TseI	GCWGC	2 cut(s)	978, 1153
Tsp45I	GTSAC	4 cut(s)	434, 498, 1030, 1129
TspDTI	ATGAA	6 cut(s)	195, 422, 458, 704, 727, 1079
TspGWI	ACGGA	3 cut(s)	13, 192, 270
TspRI	CASTG	1 cut(s)	997
VpaK11BI	GGWCC	1 cut(s)	852
XapI	RAATTY	2 cut(s)	237, 264
XceI	RCATGY	2 cut(s)	832, 1184
XmaJI	CCTAGG	1 cut(s)	373
XspI	CTAG	5 cut(s)	374, 398, 710, 801, 818
Zsp2I	ATGCAT	1 cut(s)	1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.