RLG00000008636

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015632
Physical Location & Seq
Reverse (-)
33846432 .. 33847582
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008636

Sequence Viewer

Length: 405 bp
ATGGAGATGATAGCGGGTTCCGTCGACAACGCCATGTCGGAAAGATCCCTAGCGGCGATGGAGACAACTGTGGAGCTGCCATTTTCGGATGAGTTGCCTCTCATATTTCGTGAACCAGTAAGCTATAACTTTGTTAGTCTAGGAGATCAAAGAGTATGCCTGGTTCTAGCTACATTTATCAGCCCAATAAACAGTGGCGGTCTTGCAGAGAGTGAGAAGATGAGTTTTCTTGTGACAACGTTCAAGTACAAAATTGAAACTCCCATGAAAAGAACAAGGGAAGAATCACCCATTTCCTGTCCTTCCAGCTATCAATGCCTGAGTAATCCTGTCATCTTTGAATATAATATCCAGCAGCATACTCCATCTCCTGCAACCAGGAATGCCTTTAAGCTGGGCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.89

Weight (kDa)

4.98

Isoelectric Point (pI)

66.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AciI CCGC 3 cut(s) 14, 53, 198
AclI AACGTT 1 cut(s) 239
AclWI GGATC 1 cut(s) 39
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 3 cut(s) 244, 257, 341
AjnI CCWGG 2 cut(s) 159, 377
AluBI AGCT 5 cut(s) 76, 123, 170, 309, 394
AluI AGCT 5 cut(s) 76, 123, 170, 309, 394
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 76, 355
AspLEI GCGC 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 279
BbvI GCAGC 2 cut(s) 63, 367
BccI CCATC 2 cut(s) 52, 373
BciT130I CCWGG 2 cut(s) 161, 379
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 3 cut(s) 50, 140, 167
BfoI RGCGCY 1 cut(s) 402
BisI GCNGC 3 cut(s) 54, 77, 356
BlsI GCNGC 3 cut(s) 55, 78, 357
Bme1390I CCNGG 2 cut(s) 161, 379
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 161, 379
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bse1I ACTGG 1 cut(s) 116
BseBI CCWGG 2 cut(s) 161, 379
BseGI GGATG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 63, 367
BseYI CCCAGC 1 cut(s) 394
BsmAI GTCTC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 388
Bsp143I GATC 2 cut(s) 44, 145
BspACI CCGC 3 cut(s) 14, 53, 198
BspCNI CTCAG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 39
BsrI ACTGG 1 cut(s) 116
BssMI GATC 2 cut(s) 44, 145
Bst2UI CCWGG 2 cut(s) 161, 379
Bst4CI ACNGT 2 cut(s) 70, 194
BstDEI CTNAG 2 cut(s) 320, 402
BstF5I GGATG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 402
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 2 cut(s) 47, 148
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 2 cut(s) 44, 145
BstMWI GCNNNNNNNGC 1 cut(s) 315
BstNI CCWGG 2 cut(s) 161, 379
BstSCI CCNGG 2 cut(s) 159, 377
BstV1I GCAGC 2 cut(s) 63, 367
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 199
CfoI GCGC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 34, 265
CviJI RGCY 6 cut(s) 76, 123, 170, 183, 309, 394
CviKI_1 RGCY 6 cut(s) 76, 123, 170, 183, 309, 394
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 320, 402
DpnI GATC 2 cut(s) 46, 147
DpnII GATC 2 cut(s) 44, 145
EcoRII CCWGG 2 cut(s) 159, 377
FaeI CATG 2 cut(s) 37, 268
FaiI YATR 7 cut(s) 35, 104, 126, 157, 266, 345, 360
FatI CATG 2 cut(s) 33, 264
FauI CCCGC 1 cut(s) 7
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 54, 77, 356
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 54, 77, 356
FspBI CTAG 3 cut(s) 50, 140, 167
GlaI GCGC 1 cut(s) 400
GluI GCNGC 3 cut(s) 54, 77, 356
GsaI CCCAGC 1 cut(s) 398
HaeII RGCGCY 1 cut(s) 402
HhaI GCGC 1 cut(s) 401
Hin1II CATG 2 cut(s) 37, 268
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 1 cut(s) 284
HphI GGTGA 1 cut(s) 279
Hpy166II GTNNAC 2 cut(s) 25, 113
Hpy188I TCNGA 2 cut(s) 40, 88
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 2 cut(s) 25, 113
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 2 cut(s) 70, 194
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 206, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 315
HpyF3I CTNAG 2 cut(s) 320, 402
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 2 cut(s) 37, 268
HspAI GCGC 1 cut(s) 399
Kzo9I GATC 2 cut(s) 44, 145
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 2 cut(s) 63, 367
MaeI CTAG 3 cut(s) 50, 140, 167
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 46, 147
MboI GATC 2 cut(s) 44, 145
MboII GAAGA 2 cut(s) 229, 293
MflI RGATCY 1 cut(s) 44
MluCI AATT 1 cut(s) 252
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 1 cut(s) 108
MseI TTAA 1 cut(s) 390
MspR9I CCNGG 2 cut(s) 161, 379
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 2 cut(s) 161, 379
MwoI GCNNNNNNNGC 1 cut(s) 315
NdeII GATC 2 cut(s) 44, 145
NlaIII CATG 2 cut(s) 37, 268
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 232
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 3 cut(s) 55, 78, 357
Psp1406I AACGTT 1 cut(s) 239
Psp6I CCWGG 2 cut(s) 159, 377
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 2 cut(s) 159, 377
PspN4I GGNNCC 1 cut(s) 19
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SalI GTCGAC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 3 cut(s) 54, 77, 356
Sau3AI GATC 2 cut(s) 44, 145
ScrFI CCNGG 2 cut(s) 161, 379
SetI ASST 6 cut(s) 78, 125, 172, 242, 311, 396
Sse9I AATT 1 cut(s) 252
SsiI CCGC 3 cut(s) 14, 53, 198
SspMI CTAG 3 cut(s) 50, 140, 167
StyD4I CCNGG 2 cut(s) 159, 377
TaaI ACNGT 2 cut(s) 70, 194
TaiI ACGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 252
TatI WGTACW 1 cut(s) 246
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 2 cut(s) 76, 355
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 3 cut(s) 50, 140, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.