Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0015632

Physical Location & Seq

Genomic Coordinates Reverse (-)

48806663 .. 48807760

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G025450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAGATGATAGCGGAACGATCCCTAGCGGCGATGGAGGGTAAGTATCTCTACATATGTACCAGCGAAACGCACAAATTTTTTCCCGATCGGTGGGTTGTTCACCGAATCGAAATGAGCGATGTGTTATCTGCATCGGAAGACCATATTCGTTATCTGCCTTTCAAGCAAGTGGCTAATGAAATTGGCGACTGTGACCTTCCGTATATGGTGGGTTGTGGTGTCTTCAAATCCAAAATTCTCATCGGCGGCGGCCTGAAGAAGAGGCAAACTCTCCCTCTGCCTCAGTCTCCGTCTTCATCTGTGTATTTTTTTGAGACAGACACAACCGATCAGAAACTCAAGTTGGAGTGCGTTTCCCCTTTCCGAGGAGGGAAAGCTCAACCCCTGCTAGTAGAGATGAAGGGGCAACTTTATGCTCTTGCCGGTGACCTGATCAAGTTGAGATACAATAGTCCTTTTGAGAGATTTGACCCGTCCTGCAAAAAATGGTCACCCCTGCCCGGACCTCCTCTTTGGGATCCTGACTCTCCATTCGATAGGACTCCCCTCGTCGGTTCAGGTTATGTAATTACAGACACCAGCATTCTTTTCTCACTTGAGGCTACCCCGGTGTTCCGTTTTGACATCACGAAGCCGAATGCAGGATGGTCTGTACAGGAATCTTTGTGTTCTGGAAAATCTTTTCCCTTTCAAGGCACAACTCTAGTTCATGACTGTGTTTATGGTGGTTTCATAATCTTTACCATAGATATTGAGCGTTCTGATGGGAACTGGCCTCAAACTAGATTTCCAAGAATACTAGACCACATGTCCAAGGATTATGGTTCTTGGACCGATGTAGCAACTGTGGAACTGCCATTTACAGATGAGTTGCCTCCCAAATTTCAAGAACCAGTAAGCTATAACTTTGTTAGTCTAGGAGATCAAAGAGTATGCCTGGTTCTGGCAACATTTAGGACTGGCGCTCCTGCAGAAAGTGAGAAGATGAGTTTTCTTGTGACAACATTCAAGTACAAAATTGAAACTCCCATGAAAAGGACAAGGGAAGAATCACCCATTTCCTTTTCTTTCGATCAGCTGTCAATTCCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

365

Amino Acids

41.28

Weight (kDa)

5.45

Isoelectric Point (pI)

58.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21171
rosa_laevigata	RLG00000008636 RLG00000012538 RLG00000012539 RLG00000012540 RLG00000012541 RLG00000036892
rosa_multiflora	Rmu_sc0007546.1_g000019
rosa_roxburghii	Rroxscaffold_7G00181990
rosa_rugosa	Rorug06G0182900
rosa_samantha	Rh6BG299700 Rh6BG299800 Rh6BG299900 Rh6DG291400
rosa_wichuraiana	Rw6G025450 Rw6G025460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	14, 29, 249, 252
AclWI	GGATC	3 cut(s)	15, 515, 528
AcsI	RAATTY	3 cut(s)	77, 237, 884
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	3 cut(s)	61, 657, 1016
AfiI	CCNNNNNNNGG	8 cut(s)	93, 368, 503, 554, 644, 695, 946, 1038
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	6 cut(s)	166, 229, 695, 890, 1012, 1025
AhdI	GACNNNNNGTC	1 cut(s)	811
AjnI	CCWGG	1 cut(s)	939
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	3 cut(s)	380, 903, 1081
AluI	AGCT	3 cut(s)	380, 903, 1081
Alw26I	GTCTC	2 cut(s)	294, 311
AlwI	GGATC	3 cut(s)	15, 515, 528
AoxI	GGCC	2 cut(s)	253, 776
ApoI	RAATTY	3 cut(s)	77, 237, 884
ArsI	GACNNNNNNTTYG	4 cut(s)	498, 518, 530, 550
AspLEI	GCGC	1 cut(s)	968
AspS9I	GGNCC	2 cut(s)	506, 834
AsuC2I	CCSGG	2 cut(s)	504, 611
AsuHPI	GGTGA	4 cut(s)	95, 440, 486, 1047
AvaII	GGWCC	2 cut(s)	506, 834
BaeI	ACNNNNGTAYC	4 cut(s)	43, 76, 439, 472
BamHI	GGATCC	1 cut(s)	520
BbsI	GAAGAC	3 cut(s)	147, 217, 288
BccI	CCATC	3 cut(s)	28, 642, 761
BciT130I	CCWGG	1 cut(s)	941
BclI	TGATCA	1 cut(s)	435
BcnI	CCSGG	2 cut(s)	504, 611
BcoDI	GTCTC	2 cut(s)	294, 311
BfaI	CTAG	6 cut(s)	26, 392, 707, 786, 803, 920
BfmI	CTRYAG	1 cut(s)	972
BfoI	RGCGCY	1 cut(s)	969
BisI	GCNGC	3 cut(s)	30, 250, 253
BlsI	GCNGC	3 cut(s)	31, 251, 254
Bme1390I	CCNGG	3 cut(s)	504, 611, 941
Bme18I	GGWCC	2 cut(s)	506, 834
BmeRI	GACNNNNNGTC	1 cut(s)	811
BmgT120I	GGNCC	2 cut(s)	506, 834
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	3 cut(s)	504, 611, 941
BmsI	GCATC	1 cut(s)	143
BpiI	GAAGAC	3 cut(s)	147, 217, 288
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpuEI	CTTGAG	2 cut(s)	326, 620
BpuMI	CCSGG	2 cut(s)	504, 611
BsaJI	CCNNGG	3 cut(s)	367, 609, 816
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 952, 982
Bsc4I	CCNNNNNNNGG	8 cut(s)	93, 368, 503, 554, 644, 695, 946, 1038
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	3 cut(s)	779, 896, 967
BseBI	CCWGG	1 cut(s)	941
BseDI	CCNNGG	3 cut(s)	367, 609, 816
BseGI	GGATG	1 cut(s)	653
BseLI	CCNNNNNNNGG	8 cut(s)	93, 368, 503, 554, 644, 695, 946, 1038
BseMII	CTCAG	2 cut(s)	299, 1083
BseNI	ACTGG	3 cut(s)	779, 896, 967
BseRI	GAGGAG	2 cut(s)	384, 501
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	255, 778
BsiEI	CGRYCG	1 cut(s)	91
BsiSI	CCGG	3 cut(s)	426, 504, 611
BslI	CCNNNNNNNGG	8 cut(s)	93, 368, 503, 554, 644, 695, 946, 1038
BsmAI	GTCTC	2 cut(s)	294, 311
BsmI	GAATGC	2 cut(s)	585, 646
BsnI	GGCC	2 cut(s)	255, 778
Bsp1407I	TGTACA	1 cut(s)	655
Bsp143I	GATC	7 cut(s)	20, 88, 331, 435, 520, 925, 1075
BspACI	CCGC	4 cut(s)	14, 29, 249, 252
BspANI	GGCC	2 cut(s)	255, 778
BspCNI	CTCAG	2 cut(s)	298, 1084
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	1 cut(s)	522
BspMAI	CTGCAG	1 cut(s)	976
BspPI	GGATC	3 cut(s)	15, 515, 528
BsrFI	RCCGGY	1 cut(s)	425
BsrGI	TGTACA	1 cut(s)	655
BsrI	ACTGG	3 cut(s)	779, 896, 967
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	3 cut(s)	367, 609, 816
BssMI	GATC	7 cut(s)	20, 88, 331, 435, 520, 925, 1075
BssT1I	CCWWGG	1 cut(s)	816
Bst2UI	CCWGG	1 cut(s)	941
Bst4CI	ACNGT	3 cut(s)	194, 719, 850
Bst6I	CTCTTC	1 cut(s)	257
BstAUI	TGTACA	1 cut(s)	655
BstDEI	CTNAG	2 cut(s)	285, 1092
BstEII	GGTNACC	2 cut(s)	428, 492
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	653
BstH2I	RGCGCY	1 cut(s)	969
BstHHI	GCGC	1 cut(s)	968
BstKTI	GATC	7 cut(s)	23, 91, 334, 438, 523, 928, 1078
BstMAI	GTCTC	2 cut(s)	294, 311
BstMBI	GATC	7 cut(s)	20, 88, 331, 435, 520, 925, 1075
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	941
BstNSI	RCATGY	1 cut(s)	814
BstPI	GGTNACC	2 cut(s)	428, 492
BstSCI	CCNGG	3 cut(s)	502, 609, 939
BstSFI	CTRYAG	1 cut(s)	972
BstV2I	GAAGAC	3 cut(s)	147, 217, 288
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	255, 778
BtgZI	GCGATG	2 cut(s)	47, 135
BtsCI	GGATG	1 cut(s)	653
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	1 cut(s)	968
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	2 cut(s)	506, 834
Csp6I	GTAC	3 cut(s)	60, 656, 1015
CviAII	CATG	3 cut(s)	713, 811, 1033
CviJI	RGCY	8 cut(s)	176, 255, 380, 605, 637, 778, 903, 1081
CviKI_1	RGCY	8 cut(s)	176, 255, 380, 605, 637, 778, 903, 1081
CviQI	GTAC	3 cut(s)	60, 656, 1015
DdeI	CTNAG	2 cut(s)	285, 1092
DpnI	GATC	7 cut(s)	22, 90, 333, 437, 522, 927, 1077
DpnII	GATC	7 cut(s)	20, 88, 331, 435, 520, 925, 1075
DriI	GACNNNNNGTC	1 cut(s)	811
Eam1104I	CTCTTC	1 cut(s)	257
Eam1105I	GACNNNNNGTC	1 cut(s)	811
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	816
Eco47I	GGWCC	2 cut(s)	506, 834
Eco57I	CTGAAG	1 cut(s)	278
Eco91I	GGTNACC	2 cut(s)	428, 492
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoO65I	GGTNACC	2 cut(s)	428, 492
EcoRII	CCWGG	1 cut(s)	939
EcoT14I	CCWWGG	1 cut(s)	816
ErhI	CCWWGG	1 cut(s)	816
FaeI	CATG	3 cut(s)	716, 814, 1036
FatI	CATG	3 cut(s)	712, 810, 1032
FauNDI	CATATG	1 cut(s)	56
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	30, 250, 253
FokI	GGATG	1 cut(s)	660
Fsp4HI	GCNGC	3 cut(s)	30, 250, 253
FspBI	CTAG	6 cut(s)	26, 392, 707, 786, 803, 920
GlaI	GCGC	1 cut(s)	967
GluI	GCNGC	3 cut(s)	30, 250, 253
HaeII	RGCGCY	1 cut(s)	969
HaeIII	GGCC	2 cut(s)	255, 778
HapII	CCGG	3 cut(s)	426, 504, 611
HhaI	GCGC	1 cut(s)	968
Hin1II	CATG	3 cut(s)	716, 814, 1036
Hin6I	GCGC	1 cut(s)	966
HinP1I	GCGC	1 cut(s)	966
HinfI	GANTC	5 cut(s)	108, 527, 544, 662, 1052
HpaII	CCGG	3 cut(s)	426, 504, 611
HphI	GGTGA	4 cut(s)	95, 440, 486, 1047
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	4 cut(s)	139, 336, 368, 766
Hpy188III	TCNNGA	7 cut(s)	86, 524, 631, 675, 713, 890, 1091
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	2 cut(s)	209, 397
HpyCH4III	ACNGT	3 cut(s)	194, 719, 850
HpyCH4V	TGCA	4 cut(s)	134, 483, 644, 974
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	2 cut(s)	285, 1092
Hsp92II	CATG	3 cut(s)	716, 814, 1036
HspAI	GCGC	1 cut(s)	966
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	7 cut(s)	20, 88, 331, 435, 520, 925, 1075
LmnI	GCTCC	1 cut(s)	973
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	6 cut(s)	26, 392, 707, 786, 803, 920
MaeIII	GTNAC	4 cut(s)	194, 428, 492, 1000
MalI	GATC	7 cut(s)	22, 90, 333, 437, 522, 927, 1077
MboI	GATC	7 cut(s)	20, 88, 331, 435, 520, 925, 1075
MboII	GAAGA	7 cut(s)	152, 217, 271, 274, 288, 997, 1061
MflI	RGATCY	1 cut(s)	520
MluCI	AATT	7 cut(s)	77, 183, 237, 570, 884, 1020, 1086
MlyI	GAGTC	2 cut(s)	521, 538
MmeI	TCCRAC	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	717
MspA1I	CMGCKG	1 cut(s)	1081
MspI	CCGG	3 cut(s)	426, 504, 611
MspR9I	CCNGG	3 cut(s)	504, 611, 941
Mva1269I	GAATGC	2 cut(s)	585, 646
MvaI	CCWGG	1 cut(s)	941
MwoI	GCNNNNNNNGC	1 cut(s)	166
NciI	CCSGG	2 cut(s)	504, 611
NdeI	CATATG	1 cut(s)	56
NdeII	GATC	7 cut(s)	20, 88, 331, 435, 520, 925, 1075
NlaIII	CATG	3 cut(s)	716, 814, 1036
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	4 cut(s)	194, 428, 492, 1000
NspI	RCATGY	1 cut(s)	814
PagI	TCATGA	1 cut(s)	712
PciI	ACATGT	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	2 cut(s)	585, 646
PfeI	GAWTC	3 cut(s)	108, 662, 1052
PkrI	GCNGC	3 cut(s)	31, 251, 254
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	2 cut(s)	521, 538
PpsI	GAGTC	2 cut(s)	521, 538
PscI	ACATGT	1 cut(s)	810
Psp6I	CCWGG	1 cut(s)	939
PspEI	GGTNACC	2 cut(s)	428, 492
PspGI	CCWGG	1 cut(s)	939
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	2 cut(s)	506, 834
PsrI	GAACNNNNNNTAC	2 cut(s)	927, 959
PstI	CTGCAG	1 cut(s)	976
PsuI	RGATCY	1 cut(s)	520
PvuI	CGATCG	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	1081
RsaI	GTAC	3 cut(s)	61, 657, 1016
RsaNI	GTAC	3 cut(s)	60, 656, 1015
RseI	CAYNNNNRTG	1 cut(s)	717
SatI	GCNGC	3 cut(s)	30, 250, 253
Sau3AI	GATC	7 cut(s)	20, 88, 331, 435, 520, 925, 1075
Sau96I	GGNCC	2 cut(s)	506, 834
SchI	GAGTC	2 cut(s)	521, 538
ScrFI	CCNGG	3 cut(s)	504, 611, 941
SetI	ASST	7 cut(s)	201, 382, 435, 511, 565, 905, 1083
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	1 cut(s)	972
SinI	GGWCC	2 cut(s)	506, 834
SmiMI	CAYNNNNRTG	1 cut(s)	717
SmlI	CTYRAG	2 cut(s)	341, 599
SmoI	CTYRAG	2 cut(s)	341, 599
Sse9I	AATT	7 cut(s)	77, 183, 237, 570, 884, 1020, 1086
SsiI	CCGC	4 cut(s)	14, 29, 249, 252
SspMI	CTAG	6 cut(s)	26, 392, 707, 786, 803, 920
StyD4I	CCNGG	3 cut(s)	502, 609, 939
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	3 cut(s)	194, 719, 850
TaqI	TCGA	3 cut(s)	111, 537, 1074
TaqII	GACCGA	1 cut(s)	851
TasI	AATT	7 cut(s)	77, 183, 237, 570, 884, 1020, 1086
TatI	WGTACW	2 cut(s)	655, 1014
TauI	GCSGC	3 cut(s)	32, 252, 255
TfiI	GAWTC	3 cut(s)	108, 662, 1052
TseFI	GTSAC	4 cut(s)	194, 428, 492, 1000
Tsp45I	GTSAC	4 cut(s)	194, 428, 492, 1000
TspDTI	ATGAA	6 cut(s)	195, 288, 416, 701, 724, 1049
TspGWI	ACGGA	3 cut(s)	192, 282, 608
VpaK11BI	GGWCC	2 cut(s)	506, 834
XagI	CCTNNNNNAGG	1 cut(s)	366
XapI	RAATTY	3 cut(s)	77, 237, 884
XceI	RCATGY	1 cut(s)	814
XspI	CTAG	6 cut(s)	26, 392, 707, 786, 803, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.