Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009272

Physical Location & Seq

Genomic Coordinates Reverse (-)

17561578 .. 17563676

Gene Structure 2099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26100.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTTCTGTTGCGTCTTGGCATCCTCTGTTCCTTCGACCTCGCACATCCCATTTCACCACGACCTCCTACAACACAGGCACCGCCATATGTAGAAAGAGCTATCTGCAATGTTGCAACAACAAAGAACAAGAACCACAACCAGAACAAGAAGAAAAATCGGTTTTTGGGATGCAATGCCAAGCCAAGAGAAGACAAGTTTTGCTTGGGACTACTTTTGCTGCATTTTCTTTTCCGGAAATTTATTCCAACATTGCATTGGCCGAGAATGACGATTTTCGTGTTTTCACCGATGATGTCAACAAGTTCCAGATATCAATTCCCCTAGACTGGCAAGTAGGCGCAGGGGAACCAAGTGGGTTCAAGTCAGTTACTGCTTTTTACCCGGAAGAGGGATCTAGCTCAATTAGTGTCGTAATCACGGGGCTTGGTCCGGATTTTACGAAGATGGAATCCTTTGGCAAAGTTGACGAATTCGCTGAGACTCTGGTCAGTGGACTAGATAGGAGCTGGCAAAGGACAGCAGGAGTTGCAGCAAAACTCATAGATTGCAAATCATCTAAAGGGATTTACTACATTGAGTATTCGCTACAGAAACCTGGTGAAAGTATCAAGCACCTCTATTCAGCTCTTGGGATGGCAAACAACGGCTGGTACAACAGACTATATACCGTCACTGGCCAGTTTGGAGAGGAGGAAGCGGATAAATACAGATCCAAAATTGAGAAGGCTGTAAAATCCTTCAAGTTCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

252

Amino Acids

28.18

Weight (kDa)

6.34

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	92 - 244	4e-26	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76450
fragaria_vesca	FvH4_5g26100 FvH4_5g26100 FvH4_5g26100 FvH4_5g26100 FvH4_5g26100 FvH4_5g26100
malus_domestica	MD16G1283100.v1.1
prunus_persica	Prupe.5G005500_v2.0.a1 Prupe.5G005500_v2.0.a1
pyrus_communis	pycom16g26200
rosa_chinensis	RchiOBHm_Chr7g0216691
rosa_laevigata	RLG00000002550
rosa_multiflora	Rmu_ssc0000117.1_g000013
rosa_roxburghii	Rroxscaffold_3G00243010
rosa_rugosa	Rorug07G0161800 Rorug07G0161900
rosa_samantha	Rh7AG301600 Rh7BG293400 Rh7CG320300 Rh7DG302200
rosa_wichuraiana	Rw7G025590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccIII	TCCGGA	2 cut(s)	235, 433
AciI	CCGC	2 cut(s)	84, 701
AclWI	GGATC	2 cut(s)	403, 708
AcoI	YGGCCR	2 cut(s)	261, 679
AcsI	RAATTY	2 cut(s)	240, 473
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	3 cut(s)	330, 391, 392
AgsI	TTSAA	2 cut(s)	364, 745
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	4 cut(s)	102, 402, 510, 629
AluI	AGCT	4 cut(s)	102, 402, 510, 629
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	2 cut(s)	403, 708
AlwNI	CAGNNNCTG	1 cut(s)	374
Aor13HI	TCCGGA	2 cut(s)	235, 433
AoxI	GGCC	2 cut(s)	261, 679
ApeKI	GCWGC	2 cut(s)	221, 533
ApoI	RAATTY	2 cut(s)	240, 473
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	431
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	3 cut(s)	49, 280, 614
AvaII	GGWCC	1 cut(s)	431
BalI	TGGCCA	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	208, 545
BccI	CCATC	2 cut(s)	442, 631
BceAI	ACGGC	1 cut(s)	664
BciT130I	CCWGG	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	3 cut(s)	326, 399, 500
BfmI	CTRYAG	1 cut(s)	590
BisI	GCNGC	2 cut(s)	222, 534
BlsI	GCNGC	2 cut(s)	223, 535
Bme1390I	CCNGG	2 cut(s)	386, 600
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	2 cut(s)	82, 351
BmrFI	CCNGG	2 cut(s)	386, 600
BmsI	GCATC	2 cut(s)	31, 162
BoxI	GACNNNNGTC	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	386
BsaWI	WCCGGW	2 cut(s)	235, 433
Bsc4I	CCNNNNNNNGG	3 cut(s)	330, 391, 392
Bse1I	ACTGG	3 cut(s)	335, 682, 682
Bse3DI	GCAATG	3 cut(s)	116, 182, 252
BseAI	TCCGGA	2 cut(s)	235, 433
BseBI	CCWGG	1 cut(s)	600
BseGI	GGATG	4 cut(s)	22, 47, 177, 642
BseLI	CCNNNNNNNGG	3 cut(s)	330, 391, 392
BseMI	GCAATG	3 cut(s)	116, 182, 252
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	3 cut(s)	335, 682, 682
BseRI	GAGGAG	1 cut(s)	707
BseXI	GCAGC	2 cut(s)	208, 545
BshFI	GGCC	2 cut(s)	263, 681
BshNI	GGYRCC	1 cut(s)	80
BsiSI	CCGG	3 cut(s)	236, 386, 434
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	3 cut(s)	330, 391, 392
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	263, 681
Bsp13I	TCCGGA	2 cut(s)	235, 433
Bsp143I	GATC	2 cut(s)	395, 713
BspACI	CCGC	2 cut(s)	84, 701
BspANI	GGCC	2 cut(s)	263, 681
BspCNI	CTCAG	1 cut(s)	472
BspEI	TCCGGA	2 cut(s)	235, 433
BspLI	GGNNCC	2 cut(s)	82, 351
BspPI	GGATC	2 cut(s)	403, 708
BspT107I	GGYRCC	1 cut(s)	80
BsrDI	GCAATG	3 cut(s)	116, 182, 252
BsrI	ACTGG	3 cut(s)	335, 682, 682
BssMI	GATC	2 cut(s)	395, 713
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	673
Bst6I	CTCTTC	1 cut(s)	384
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	1 cut(s)	480
BstF5I	GGATG	4 cut(s)	22, 47, 177, 642
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	2 cut(s)	398, 716
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	2 cut(s)	395, 713
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 530
BstNI	CCWGG	1 cut(s)	600
BstPAI	GACNNNNGTC	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	384, 598
BstSFI	CTRYAG	1 cut(s)	590
BstV1I	GCAGC	2 cut(s)	208, 545
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	2 cut(s)	395, 713
BstYI	RGATCY	2 cut(s)	395, 713
BsuRI	GGCC	2 cut(s)	263, 681
BtsCI	GGATG	4 cut(s)	22, 47, 177, 642
BtsIMutI	CAGTG	2 cut(s)	499, 675
Cac8I	GCNNGC	1 cut(s)	512
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	431
CseI	GACGC	1 cut(s)	3
CsiI	ACCWGGT	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	655
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	2 cut(s)	397, 715
DpnII	GATC	2 cut(s)	395, 713
EaeI	YGGCCR	2 cut(s)	261, 679
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	598
EcoRV	GATATC	1 cut(s)	315
FaiI	YATR	7 cut(s)	89, 91, 545, 667, 669, 752, 754
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	223
FauNDI	CATATG	2 cut(s)	89, 752
Fnu4HI	GCNGC	2 cut(s)	222, 534
FokI	GGATG	4 cut(s)	9, 34, 184, 649
Fsp4HI	GCNGC	2 cut(s)	222, 534
FspBI	CTAG	3 cut(s)	326, 399, 500
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	2 cut(s)	222, 534
HaeIII	GGCC	2 cut(s)	263, 681
HapII	CCGG	3 cut(s)	236, 386, 434
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	2 cut(s)	301, 469
HindII	GTYRAC	2 cut(s)	301, 469
HinfI	GANTC	2 cut(s)	452, 484
HpaII	CCGG	3 cut(s)	236, 386, 434
HphI	GGTGA	3 cut(s)	49, 280, 614
Hpy166II	GTNNAC	3 cut(s)	301, 469, 497
Hpy188III	TCNNGA	3 cut(s)	236, 310, 434
Hpy8I	GTNNAC	3 cut(s)	301, 469, 497
HpyAV	CCTTC	3 cut(s)	44, 721, 751
HpyCH4III	ACNGT	1 cut(s)	673
HpyCH4V	TGCA	7 cut(s)	109, 117, 175, 224, 257, 533, 552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 530
HpyF3I	CTNAG	1 cut(s)	480
HspAI	GCGC	1 cut(s)	342
Kpn2I	TCCGGA	2 cut(s)	235, 433
Kzo9I	GATC	2 cut(s)	395, 713
LmnI	GCTCC	1 cut(s)	507
Lsp1109I	GCAGC	2 cut(s)	208, 545
LweI	GCATC	2 cut(s)	31, 162
MabI	ACCWGGT	1 cut(s)	598
MaeI	CTAG	3 cut(s)	326, 399, 500
MaeIII	GTNAC	2 cut(s)	370, 673
MalI	GATC	2 cut(s)	397, 715
MboI	GATC	2 cut(s)	395, 713
MboII	GAAGA	4 cut(s)	164, 204, 401, 457
MflI	RGATCY	2 cut(s)	395, 713
MlsI	TGGCCA	1 cut(s)	681
MluCI	AATT	5 cut(s)	240, 318, 405, 473, 720
MluNI	TGGCCA	1 cut(s)	681
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	7 cut(s)	36, 51, 76, 385, 629, 685, 688
Mox20I	TGGCCA	1 cut(s)	681
MroI	TCCGGA	2 cut(s)	235, 433
MscI	TGGCCA	1 cut(s)	681
Msp20I	TGGCCA	1 cut(s)	681
MspI	CCGG	3 cut(s)	236, 386, 434
MspR9I	CCNGG	2 cut(s)	386, 600
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	11, 530
NciI	CCSGG	1 cut(s)	386
NdeI	CATATG	2 cut(s)	89, 752
NdeII	GATC	2 cut(s)	395, 713
NlaIV	GGNNCC	2 cut(s)	82, 351
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	673
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	223, 535
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PshAI	GACNNNNGTC	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	82, 351
PspPI	GGNCC	1 cut(s)	431
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	2 cut(s)	395, 713
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
SatI	GCNGC	2 cut(s)	222, 534
Sau3AI	GATC	2 cut(s)	395, 713
Sau96I	GGNCC	1 cut(s)	431
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	2 cut(s)	386, 600
SetI	ASST	8 cut(s)	43, 68, 104, 404, 512, 601, 621, 631
SexAI	ACCWGGT	1 cut(s)	598
SfaNI	GCATC	2 cut(s)	31, 162
SfcI	CTRYAG	1 cut(s)	590
SinI	GGWCC	1 cut(s)	431
Sse9I	AATT	5 cut(s)	240, 318, 405, 473, 720
SsiI	CCGC	2 cut(s)	84, 701
SspMI	CTAG	3 cut(s)	326, 399, 500
StyD4I	CCNGG	2 cut(s)	384, 598
TaaI	ACNGT	1 cut(s)	673
TaqI	TCGA	1 cut(s)	37
TasI	AATT	5 cut(s)	240, 318, 405, 473, 720
TfiI	GAWTC	1 cut(s)	452
TscAI	CASTG	2 cut(s)	499, 682
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	2 cut(s)	221, 533
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	1 cut(s)	739
TspRI	CASTG	2 cut(s)	499, 682
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	2 cut(s)	240, 473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XspI	CTAG	3 cut(s)	326, 399, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.