Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009272

Physical Location & Seq

Genomic Coordinates Forward (+)

28486505 .. 28488740

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g26200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTCCCGATTCGATTTTAGAGCTGAAATAAACGAGAAGAAGGCGGAAGGCAATCTAAAAGGCATGGCGTGCGTTGCGTCCTGGTATTCTCTGCCTCCGGTGCGACCTCGCACATGCCACTCCAACGCCTTCTCGAACAACAGAGGCATCGCCGTACGCAGTAGAAAAAGCCATGCGCTCCTGCAATGTTGCGAAAACAAACAAGAAAAAACCGACGCCAAAACAGAAACATGTTTTGGCATTGAATTCCAATCTACGAGGAGACAAGTTGTGCTTGGGACGGCGTTTGCTGCATTTTCTTTTCCCCATCTCATTTCAAATGCATTTGCAGAGAATGATGTGCCGGAGGGTTTTCGAGTTTACACTGATGATGTCAATAAGTTCAAGATATTGATTCCCCAAGACTGGCAAGTAGGCGCAGGAGAGCCAACTGGGTTTAAATCAGTCACAGCTTTCTACCCAGAACAAGAGGGTAATAGCTCAAGTGGTCTTTCTGGGGCTGCTGCTTCAGTTAGCGTTGTGATCACGGGGCTTGGTCCGGATTTTACAAAGATGGAATCCTTTGGTAAAGTTGAAGCGTTTGCTGAGACTCTGGTTAGTGGATTGGATAGGAGCTGGCAAAGGCCAGCAGGAGTGGCAGCAAAGCTTATAGATTGCAAAGCATCGAAAGGCCTTTACTTCATCGAGTATTCGCTACAAAAACCCGGTGAAAGTTGCAAGCACCTGTTTTCAGCACTTGGGATGGCAACCAACGGTTGGTACAACAGACTGTATACAGTCACCGGACAGTACGTCGAGGAAGAATCAGATAAATACAGCGCCAATGTTAAGGAGGTCAGCTTAAAACGAAACGTTACGCTGTCAAATCCTTCAGGTTCATTTGAGGGCTCCAGCCAGAGTTTGAAACTACAGTTTTACGCCGATTTTGATTGTCAGTACGGTCAGTATTTCGTGCTTCTAACTGGTAGATACATAGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

328

Amino Acids

36.11

Weight (kDa)

8.03

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76450
fragaria_vesca	FvH4_5g26100 FvH4_5g26100 FvH4_5g26100 FvH4_5g26100 FvH4_5g26100 FvH4_5g26100
malus_domestica	MD16G1283100.v1.1
prunus_persica	Prupe.5G005500_v2.0.a1 Prupe.5G005500_v2.0.a1
pyrus_communis	pycom16g26200
rosa_chinensis	RchiOBHm_Chr7g0216691
rosa_laevigata	RLG00000002550
rosa_multiflora	Rmu_ssc0000117.1_g000013
rosa_roxburghii	Rroxscaffold_3G00243010
rosa_rugosa	Rorug07G0161800 Rorug07G0161900
rosa_samantha	Rh7AG301600 Rh7BG293400 Rh7CG320300 Rh7DG302200
rosa_wichuraiana	Rw7G025590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	756
AccI	GTMKAC	1 cut(s)	773
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	1 cut(s)	44
AclI	AACGTT	1 cut(s)	852
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	2 cut(s)	492, 855
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	4 cut(s)	156, 761, 791, 938
AfiI	CCNNNNNNNGG	2 cut(s)	405, 756
AflIII	ACRYGT	1 cut(s)	230
AgsI	TTSAA	5 cut(s)	245, 318, 385, 575, 904
AhdI	GACNNNNNGTC	1 cut(s)	791
AjnI	CCWGG	1 cut(s)	80
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	6 cut(s)	23, 452, 480, 615, 646, 840
AluI	AGCT	6 cut(s)	23, 452, 480, 615, 646, 840
Alw26I	GTCTC	2 cut(s)	256, 581
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	2 cut(s)	623, 670
ApeKI	GCWGC	4 cut(s)	290, 500, 503, 638
ApoI	RAATTY	1 cut(s)	245
AspLEI	GCGC	3 cut(s)	178, 419, 821
AspS9I	GGNCC	1 cut(s)	536
AsuC2I	CCSGG	1 cut(s)	705
AsuHPI	GGTGA	2 cut(s)	719, 772
AvaII	GGWCC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	890
BbvI	GCAGC	4 cut(s)	277, 487, 490, 650
BccI	CCATC	3 cut(s)	315, 547, 736
BceAI	ACGGC	2 cut(s)	137, 297
BciT130I	CCWGG	1 cut(s)	82
BclI	TGATCA	1 cut(s)	522
BcnI	CCSGG	1 cut(s)	705
BcoDI	GTCTC	2 cut(s)	256, 581
BfmI	CTRYAG	1 cut(s)	908
BfoI	RGCGCY	1 cut(s)	822
BisI	GCNGC	4 cut(s)	291, 501, 504, 639
BlsI	GCNGC	4 cut(s)	292, 502, 505, 640
Bme1390I	CCNGG	2 cut(s)	82, 705
Bme18I	GGWCC	1 cut(s)	536
BmeRI	GACNNNNNGTC	1 cut(s)	791
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	1 cut(s)	889
BmrFI	CCNGG	2 cut(s)	82, 705
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	156, 671
BmuI	ACTGGG	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	874
BpuEI	CTTGAG	1 cut(s)	466
BpuMI	CCSGG	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	216
BsaWI	WCCGGW	3 cut(s)	97, 538, 782
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 756
Bse1I	ACTGG	3 cut(s)	410, 436, 967
Bse3DI	GCAATG	1 cut(s)	191
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	747
BseLI	CCNNNNNNNGG	2 cut(s)	405, 756
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	3 cut(s)	410, 436, 967
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	4 cut(s)	277, 487, 490, 650
BshFI	GGCC	2 cut(s)	625, 672
BsiSI	CCGG	5 cut(s)	98, 344, 539, 705, 783
BsiWI	CGTACG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	405, 756
BsmAI	GTCTC	2 cut(s)	256, 581
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	625, 672
Bsp1286I	GDGCHC	1 cut(s)	890
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	1 cut(s)	522
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	2 cut(s)	625, 672
BspCNI	CTCAG	1 cut(s)	577
BspEI	TCCGGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	889
BsrDI	GCAATG	1 cut(s)	191
BsrI	ACTGG	3 cut(s)	410, 436, 967
BssMI	GATC	1 cut(s)	522
BssNAI	GTATAC	1 cut(s)	774
BssNI	GRCGYC	1 cut(s)	216
Bst1107I	GTATAC	1 cut(s)	774
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	6 cut(s)	755, 771, 778, 789, 912, 941
BstACI	GRCGYC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	69
BstC8I	GCNNGC	4 cut(s)	70, 617, 627, 719
BstDEI	CTNAG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	747
BstH2I	RGCGCY	1 cut(s)	822
BstHHI	GCGC	3 cut(s)	178, 419, 821
BstKTI	GATC	1 cut(s)	525
BstMAI	GTCTC	2 cut(s)	256, 581
BstMBI	GATC	1 cut(s)	522
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 74, 100, 290, 635
BstNI	CCWGG	1 cut(s)	82
BstNSI	RCATGY	2 cut(s)	117, 234
BstSCI	CCNGG	2 cut(s)	80, 703
BstSFI	CTRYAG	1 cut(s)	908
BstV1I	GCAGC	4 cut(s)	277, 487, 490, 650
BstZ17I	GTATAC	1 cut(s)	774
BsuRI	GGCC	2 cut(s)	625, 672
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	747
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	4 cut(s)	70, 617, 627, 719
CfoI	GCGC	3 cut(s)	178, 419, 821
Cfr13I	GGNCC	1 cut(s)	536
CseI	GACGC	2 cut(s)	66, 224
Csp6I	GTAC	4 cut(s)	155, 760, 790, 937
CviAII	CATG	4 cut(s)	64, 114, 173, 231
CviQI	GTAC	4 cut(s)	155, 760, 790, 937
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	1 cut(s)	524
DpnII	GATC	1 cut(s)	522
DraI	TTTAAA	1 cut(s)	439
DriI	GACNNNNNGTC	1 cut(s)	791
Eam1105I	GACNNNNNGTC	1 cut(s)	791
EciI	GGCGGA	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	672
Eco24I	GRGCYC	1 cut(s)	890
Eco47I	GGWCC	1 cut(s)	536
Eco57I	CTGAAG	2 cut(s)	492, 855
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	890
FaeI	CATG	4 cut(s)	67, 117, 176, 234
FaiI	YATR	7 cut(s)	65, 115, 174, 232, 650, 774, 974
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	4 cut(s)	63, 113, 172, 230
FbaI	TGATCA	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	773
Fnu4HI	GCNGC	4 cut(s)	291, 501, 504, 639
FokI	GGATG	1 cut(s)	754
FriOI	GRGCYC	1 cut(s)	890
Fsp4HI	GCNGC	4 cut(s)	291, 501, 504, 639
GlaI	GCGC	3 cut(s)	177, 418, 820
GluI	GCNGC	4 cut(s)	291, 501, 504, 639
GsuI	CTGGAG	1 cut(s)	874
HaeII	RGCGCY	1 cut(s)	822
HaeIII	GGCC	2 cut(s)	625, 672
HapII	CCGG	5 cut(s)	98, 344, 539, 705, 783
HgaI	GACGC	2 cut(s)	66, 224
HhaI	GCGC	3 cut(s)	178, 419, 821
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	4 cut(s)	67, 117, 176, 234
Hin6I	GCGC	3 cut(s)	176, 417, 819
HinP1I	GCGC	3 cut(s)	176, 417, 819
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	5 cut(s)	9, 394, 557, 589, 803
HpaII	CCGG	5 cut(s)	98, 344, 539, 705, 783
HphI	GGTGA	2 cut(s)	719, 772
Hpy166II	GTNNAC	2 cut(s)	361, 774
Hpy188I	TCNGA	1 cut(s)	808
Hpy188III	TCNNGA	4 cut(s)	6, 133, 385, 539
Hpy8I	GTNNAC	2 cut(s)	361, 774
Hpy99I	CGWCG	2 cut(s)	218, 797
HpyAV	CCTTC	4 cut(s)	34, 41, 139, 879
HpyCH4III	ACNGT	6 cut(s)	755, 771, 778, 789, 912, 941
HpyCH4IV	ACGT	2 cut(s)	792, 852
HpyCH4V	TGCA	6 cut(s)	184, 293, 323, 329, 657, 717
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 74, 100, 290, 635
HpyF3I	CTNAG	1 cut(s)	585
HpySE526I	ACGT	2 cut(s)	792, 852
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	4 cut(s)	67, 117, 176, 234
HspAI	GCGC	3 cut(s)	176, 417, 819
Kpn2I	TCCGGA	1 cut(s)	538
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	1 cut(s)	522
LmnI	GCTCC	3 cut(s)	183, 612, 893
Lsp1109I	GCAGC	4 cut(s)	277, 487, 490, 650
LweI	GCATC	2 cut(s)	156, 671
MaeII	ACGT	2 cut(s)	792, 852
MaeIII	GTNAC	3 cut(s)	445, 778, 853
MalI	GATC	1 cut(s)	524
MboI	GATC	1 cut(s)	522
MboII	GAAGA	2 cut(s)	49, 812
MhlI	GDGCHC	1 cut(s)	890
MluCI	AATT	2 cut(s)	245, 979
MlyI	GAGTC	1 cut(s)	583
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	9 cut(s)	105, 117, 137, 252, 340, 463, 790, 826, 877
Mph1103I	ATGCAT	1 cut(s)	325
MroI	TCCGGA	1 cut(s)	538
MseI	TTAA	3 cut(s)	438, 828, 842
MspI	CCGG	5 cut(s)	98, 344, 539, 705, 783
MspR9I	CCNGG	2 cut(s)	82, 705
MvaI	CCWGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	5 cut(s)	69, 74, 100, 290, 635
NciI	CCSGG	1 cut(s)	705
NdeII	GATC	1 cut(s)	522
NlaIII	CATG	4 cut(s)	67, 117, 176, 234
NlaIV	GGNNCC	1 cut(s)	889
NmuCI	GTSAC	2 cut(s)	445, 778
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	2 cut(s)	117, 234
PceI	AGGCCT	1 cut(s)	672
PciI	ACATGT	1 cut(s)	230
PfeI	GAWTC	4 cut(s)	9, 394, 557, 803
Pfl23II	CGTACG	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	756
PkrI	GCNGC	4 cut(s)	292, 502, 505, 640
PleI	GAGTC	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	583
PscI	ACATGT	1 cut(s)	230
Psp1406I	AACGTT	1 cut(s)	852
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspLI	CGTACG	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	889
PspPI	GGNCC	1 cut(s)	536
RsaI	GTAC	4 cut(s)	156, 761, 791, 938
RsaNI	GTAC	4 cut(s)	155, 760, 790, 937
SaqAI	TTAA	3 cut(s)	438, 828, 842
SatI	GCNGC	4 cut(s)	291, 501, 504, 639
Sau3AI	GATC	1 cut(s)	522
Sau96I	GGNCC	1 cut(s)	536
SchI	GAGTC	1 cut(s)	583
ScrFI	CCNGG	2 cut(s)	82, 705
SduI	GDGCHC	1 cut(s)	890
SfaNI	GCATC	2 cut(s)	156, 671
SfcI	CTRYAG	1 cut(s)	908
SinI	GGWCC	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
Sse9I	AATT	2 cut(s)	245, 979
SseBI	AGGCCT	1 cut(s)	672
SsiI	CCGC	1 cut(s)	44
StuI	AGGCCT	1 cut(s)	672
StyD4I	CCNGG	2 cut(s)	80, 703
TaaI	ACNGT	6 cut(s)	755, 771, 778, 789, 912, 941
TaiI	ACGT	2 cut(s)	795, 855
TaqI	TCGA	6 cut(s)	12, 134, 355, 665, 684, 795
TasI	AATT	2 cut(s)	245, 979
TfiI	GAWTC	4 cut(s)	9, 394, 557, 803
Tru1I	TTAA	3 cut(s)	438, 828, 842
Tru9I	TTAA	3 cut(s)	438, 828, 842
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	2 cut(s)	445, 778
TseI	GCWGC	4 cut(s)	290, 500, 503, 638
Tsp45I	GTSAC	2 cut(s)	445, 778
TspDTI	ATGAA	2 cut(s)	670, 867
TspRI	CASTG	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	756
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	2 cut(s)	117, 234
XmiI	GTMKAC	1 cut(s)	773
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.