Rh7BG293400

psbP domain-containing protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009272
Physical Location & Seq
Forward (+)
27531521 .. 27533514
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG293400.1

Sequence Viewer

Length: 714 bp
ATGTTGCAACAACAAAAAACAAGAACCACAACTAGAACAAGAAGAAAAACCAGTGTATGTAACTTACAGAGCATTTATGGAAGCAATAGCATGCTTTTGCTCGGTTCATATTCATATACTTGTTTTTGCTTAAATTCCAGTTTTGGGATGCAATGCCAAGCCAAGAGAAGACAAGTTTTGCTTGGGACGACTTTTGCTGCATTTTCTTTTCCGGAAATTTATTCAAAAAACATTGCATTGGCCGAGAATGAGGGTTTTCGTGTTTTCAGCGATGATGTCAACAAGTTCCAGATATCAATTCCCCTAGACTGGCAAGTAGGCGCAGGAGAACCAAGTGGGTTCAAGTCAGTTACTGCTTTCTACCCGGAAGAGGGTTTTAGCTCAATTAGTGTCGTAATCAGTGGGCTTGGTCCGGATTTTACAAAGATGGAATCCTTTGGCAAGGTTGAAGAATTTGCTGAGACTCTGGTCAGCGGACTAGATAGGAGCTGGCAAAGGCCAGCAGGAGTTTCAGCAAAACTCATAGATTGCAAATCATCTAAAGGGCTTTACTACATTGAGTATTCACTGCAAAATCCTGGTGATAGTATGAAGCACCTCTATTCAGCTCTTGGGATGGCAAGCAACGGCTGGTACAACAGATTATATACCGTCACCGGCCAGGTATGGTTTCCACAACTGCCATTGTTCTGTACAACTGCTCTCTTACATTAA

Protein Analysis

237

Amino Acids

26.46

Weight (kDa)

8.69

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 84 - 221 1.2e-22 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 211, 412
AciI CCGC 1 cut(s) 474
AcoI YGGCCR 2 cut(s) 240, 658
AcsI RAATTY 3 cut(s) 133, 216, 452
AfaI GTAC 2 cut(s) 635, 694
AfiI CCNNNNNNNGG 4 cut(s) 144, 309, 370, 371
AgsI TTSAA 3 cut(s) 225, 343, 449
AjnI CCWGG 2 cut(s) 577, 660
AluBI AGCT 3 cut(s) 381, 489, 608
AluI AGCT 3 cut(s) 381, 489, 608
Alw26I GTCTC 1 cut(s) 455
AlwNI CAGNNNCTG 1 cut(s) 353
Aor13HI TCCGGA 2 cut(s) 211, 412
AoxI GGCC 3 cut(s) 240, 497, 658
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 3 cut(s) 133, 216, 452
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 593, 646
AvaII GGWCC 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 184
BccI CCATC 2 cut(s) 421, 610
BceAI ACGGC 1 cut(s) 643
BciT130I CCWGG 2 cut(s) 579, 662
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 3 cut(s) 33, 305, 479
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 3 cut(s) 365, 579, 662
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 410
BmrFI CCNGG 3 cut(s) 365, 579, 662
BmsI GCATC 1 cut(s) 138
BoxI GACNNNNGTC 1 cut(s) 467
BpiI GAAGAC 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 365
BsaWI WCCGGW 2 cut(s) 211, 412
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 309, 370, 371
Bse118I RCCGGY 1 cut(s) 656
Bse1I ACTGG 3 cut(s) 51, 138, 314
Bse3DI GCAATG 2 cut(s) 158, 231
BseAI TCCGGA 2 cut(s) 211, 412
BseBI CCWGG 2 cut(s) 579, 662
BseGI GGATG 2 cut(s) 153, 621
BseLI CCNNNNNNNGG 4 cut(s) 144, 309, 370, 371
BseMI GCAATG 2 cut(s) 158, 231
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 3 cut(s) 51, 138, 314
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 3 cut(s) 242, 499, 660
BsiSI CCGG 4 cut(s) 212, 365, 413, 657
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 4 cut(s) 144, 309, 370, 371
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 3 cut(s) 242, 499, 660
Bsp13I TCCGGA 2 cut(s) 211, 412
Bsp1407I TGTACA 1 cut(s) 692
BspACI CCGC 1 cut(s) 474
BspANI GGCC 3 cut(s) 242, 499, 660
BspCNI CTCAG 1 cut(s) 451
BspEI TCCGGA 2 cut(s) 211, 412
BsrDI GCAATG 2 cut(s) 158, 231
BsrFI RCCGGY 1 cut(s) 656
BsrGI TGTACA 1 cut(s) 692
BsrI ACTGG 3 cut(s) 51, 138, 314
BssAI RCCGGY 1 cut(s) 656
Bst2UI CCWGG 2 cut(s) 579, 662
Bst4CI ACNGT 1 cut(s) 652
Bst6I CTCTTC 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 692
BstC8I GCNNGC 4 cut(s) 92, 491, 501, 622
BstDEI CTNAG 1 cut(s) 459
BstF5I GGATG 2 cut(s) 153, 621
BstHHI GCGC 1 cut(s) 323
BstMAI GTCTC 1 cut(s) 455
BstNI CCWGG 2 cut(s) 579, 662
BstNSI RCATGY 1 cut(s) 94
BstPAI GACNNNNGTC 1 cut(s) 467
BstSCI CCNGG 3 cut(s) 363, 577, 660
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 175
BsuRI GGCC 3 cut(s) 242, 499, 660
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 2 cut(s) 153, 621
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 3 cut(s) 58, 406, 566
Cac8I GCNNGC 4 cut(s) 92, 491, 501, 622
CaiI CAGNNNCTG 1 cut(s) 353
CfoI GCGC 1 cut(s) 323
Cfr10I RCCGGY 1 cut(s) 656
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 2 cut(s) 634, 693
CviAII CATG 1 cut(s) 91
CviQI GTAC 2 cut(s) 634, 693
DdeI CTNAG 1 cut(s) 459
EaeI YGGCCR 2 cut(s) 240, 658
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco32I GATATC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 577, 660
EcoRV GATATC 1 cut(s) 294
FaeI CATG 1 cut(s) 94
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FaqI GGGAC 1 cut(s) 199
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 2 cut(s) 160, 628
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 3 cut(s) 33, 305, 479
GlaI GCGC 1 cut(s) 322
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 3 cut(s) 242, 499, 660
HapII CCGG 4 cut(s) 212, 365, 413, 657
HhaI GCGC 1 cut(s) 323
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 2 cut(s) 431, 463
HpaII CCGG 4 cut(s) 212, 365, 413, 657
HphI GGTGA 2 cut(s) 593, 646
Hpy166II GTNNAC 1 cut(s) 280
Hpy188III TCNNGA 3 cut(s) 212, 289, 413
Hpy8I GTNNAC 1 cut(s) 280
HpyCH4III ACNGT 1 cut(s) 652
HpyCH4V TGCA 6 cut(s) 7, 151, 200, 236, 531, 571
HpyF3I CTNAG 1 cut(s) 459
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 321
Kpn2I TCCGGA 2 cut(s) 211, 412
LmnI GCTCC 1 cut(s) 486
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 138
MaeI CTAG 3 cut(s) 33, 305, 479
MaeIII GTNAC 3 cut(s) 59, 349, 652
MboII GAAGA 4 cut(s) 54, 180, 380, 461
MluCI AATT 5 cut(s) 133, 216, 297, 384, 452
MlyI GAGTC 1 cut(s) 457
MnlI CCTC 3 cut(s) 244, 364, 608
MroI TCCGGA 2 cut(s) 211, 412
MseI TTAA 2 cut(s) 131, 712
MspA1I CMGCKG 1 cut(s) 474
MspI CCGG 4 cut(s) 212, 365, 413, 657
MspR9I CCNGG 3 cut(s) 365, 579, 662
MvaI CCWGG 2 cut(s) 579, 662
NciI CCSGG 1 cut(s) 365
NlaIII CATG 1 cut(s) 94
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 652
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PshAI GACNNNNGTC 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 577, 660
PspGI CCWGG 2 cut(s) 577, 660
PspPI GGNCC 1 cut(s) 410
PstNI CAGNNNCTG 1 cut(s) 353
RsaI GTAC 2 cut(s) 635, 694
RsaNI GTAC 2 cut(s) 634, 693
SaqAI TTAA 2 cut(s) 131, 712
SatI GCNGC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 3 cut(s) 365, 579, 662
SetI ASST 6 cut(s) 383, 447, 491, 600, 610, 666
SfaNI GCATC 1 cut(s) 138
SinI GGWCC 1 cut(s) 410
SphI GCATGC 1 cut(s) 94
Sse9I AATT 5 cut(s) 133, 216, 297, 384, 452
SsiI CCGC 1 cut(s) 474
SspMI CTAG 3 cut(s) 33, 305, 479
StyD4I CCNGG 3 cut(s) 363, 577, 660
TaaI ACNGT 1 cut(s) 652
TasI AATT 5 cut(s) 133, 216, 297, 384, 452
TatI WGTACW 1 cut(s) 692
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 2 cut(s) 131, 712
Tru9I TTAA 2 cut(s) 131, 712
TscAI CASTG 3 cut(s) 58, 406, 573
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 3 cut(s) 96, 102, 605
TspRI CASTG 3 cut(s) 58, 406, 573
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 3 cut(s) 133, 216, 452
XceI RCATGY 1 cut(s) 94
XspI CTAG 3 cut(s) 33, 305, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.