Rh7AG301600

psbP domain-containing protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0009272
Physical Location & Seq
Forward (+)
33099763 .. 33102079
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG301600.1

Sequence Viewer

Length: 735 bp
ATGTTGCAACAACAAAAAACAAGAACCACAACTAGAACAAAAAGAAAAACCAGTGTATGTAACTTACAGAGCATTTATGGAAGCAATAGCATGCTTTTGCTCGGTTCATATTCATGTACTTGTTTTTGCTTAAATTCCAGTTTTGGGATGCAATGCCAAGCCAAGAGAAGACAAGTTTTGCTTGGGACGACTTTTGCTGCATTTTCTTTTCCGGAAATTTATTCAAAAAACATTGCATTGGCCGAGAATGAGGATTTTCGTGTTTTCACCGATGATGTCAACAAGTTCCAGATATCAATTCCCCTAGACTGGCAAGTAGGCGCAGGAGAACCAAGTGGGTTCAAGTCAGTTACTGCTTTCTACCCGGAAGAGGGTTTTAGCTCAATTAGTGTCGTAATCACGGGGCTTGGTCCGGATTTTACAAAGATTGAATCCTTTGGCAAGGTTGAAGAATTTGCTGAGACTCTGGTCAGCGGACTAGATAGGAGCTGGCAAAGGCCAGCAGGAGTTTCAGCGAAACTCATAGATTGCAAATCATCTAAAGGGCTTTACTACATTGAGTATTCACTGCAAAATCCTGGTGAAAGTATGAAGCACCTCTATTCAGCTCTTGGGATGGCAAGCAACGGCTGGTACAACAGATTATATACCGTCACCGGCCAGTTTGCAGAGGAAGAATCGGATAAGTACAGTTCCAAAATTGAGAAGGCTGTAAAATCCTTTAAGTTCATATGA

Protein Analysis

244

Amino Acids

27.28

Weight (kDa)

8.43

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 85 - 243 3.3e-29 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 211, 412
AciI CCGC 1 cut(s) 474
AcoI YGGCCR 2 cut(s) 240, 658
AcsI RAATTY 3 cut(s) 133, 216, 452
AfaI GTAC 3 cut(s) 118, 635, 689
AfiI CCNNNNNNNGG 4 cut(s) 144, 309, 370, 371
AgsI TTSAA 4 cut(s) 225, 343, 431, 449
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 3 cut(s) 381, 489, 608
AluI AGCT 3 cut(s) 381, 489, 608
Alw26I GTCTC 1 cut(s) 455
AlwNI CAGNNNCTG 1 cut(s) 353
Aor13HI TCCGGA 2 cut(s) 211, 412
AoxI GGCC 3 cut(s) 240, 497, 658
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 3 cut(s) 133, 216, 452
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 3 cut(s) 259, 593, 646
AvaII GGWCC 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 610
BceAI ACGGC 1 cut(s) 643
BciT130I CCWGG 1 cut(s) 579
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 3 cut(s) 33, 305, 479
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 2 cut(s) 365, 579
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 410
BmrFI CCNGG 2 cut(s) 365, 579
BmsI GCATC 1 cut(s) 138
BoxI GACNNNNGTC 1 cut(s) 467
BpiI GAAGAC 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 365
BsaWI WCCGGW 2 cut(s) 211, 412
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 309, 370, 371
Bse118I RCCGGY 1 cut(s) 656
Bse1I ACTGG 4 cut(s) 51, 138, 314, 661
Bse3DI GCAATG 2 cut(s) 158, 231
BseAI TCCGGA 2 cut(s) 211, 412
BseBI CCWGG 1 cut(s) 579
BseGI GGATG 2 cut(s) 153, 621
BseLI CCNNNNNNNGG 4 cut(s) 144, 309, 370, 371
BseMI GCAATG 2 cut(s) 158, 231
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 4 cut(s) 51, 138, 314, 661
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 3 cut(s) 242, 499, 660
BsiSI CCGG 4 cut(s) 212, 365, 413, 657
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 4 cut(s) 144, 309, 370, 371
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 3 cut(s) 242, 499, 660
Bsp13I TCCGGA 2 cut(s) 211, 412
BspACI CCGC 1 cut(s) 474
BspANI GGCC 3 cut(s) 242, 499, 660
BspCNI CTCAG 1 cut(s) 451
BspEI TCCGGA 2 cut(s) 211, 412
BsrDI GCAATG 2 cut(s) 158, 231
BsrFI RCCGGY 1 cut(s) 656
BsrI ACTGG 4 cut(s) 51, 138, 314, 661
BssAI RCCGGY 1 cut(s) 656
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 2 cut(s) 652, 692
Bst6I CTCTTC 1 cut(s) 363
BstC8I GCNNGC 4 cut(s) 92, 491, 501, 622
BstDEI CTNAG 1 cut(s) 459
BstF5I GGATG 2 cut(s) 153, 621
BstHHI GCGC 1 cut(s) 323
BstMAI GTCTC 1 cut(s) 455
BstNI CCWGG 1 cut(s) 579
BstNSI RCATGY 1 cut(s) 94
BstPAI GACNNNNGTC 1 cut(s) 467
BstSCI CCNGG 2 cut(s) 363, 577
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 175
BsuRI GGCC 3 cut(s) 242, 499, 660
BtsCI GGATG 2 cut(s) 153, 621
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 2 cut(s) 58, 566
Cac8I GCNNGC 4 cut(s) 92, 491, 501, 622
CaiI CAGNNNCTG 1 cut(s) 353
CfoI GCGC 1 cut(s) 323
Cfr10I RCCGGY 1 cut(s) 656
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 3 cut(s) 117, 634, 688
CviAII CATG 2 cut(s) 91, 114
CviQI GTAC 3 cut(s) 117, 634, 688
DdeI CTNAG 1 cut(s) 459
EaeI YGGCCR 2 cut(s) 240, 658
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco32I GATATC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 577
EcoRV GATATC 1 cut(s) 294
FaeI CATG 2 cut(s) 94, 117
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FaqI GGGAC 1 cut(s) 199
FatI CATG 2 cut(s) 90, 113
FauNDI CATATG 1 cut(s) 731
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 2 cut(s) 160, 628
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 3 cut(s) 33, 305, 479
GlaI GCGC 1 cut(s) 322
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 3 cut(s) 242, 499, 660
HapII CCGG 4 cut(s) 212, 365, 413, 657
HhaI GCGC 1 cut(s) 323
Hin1II CATG 2 cut(s) 94, 117
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 3 cut(s) 431, 463, 677
HpaII CCGG 4 cut(s) 212, 365, 413, 657
HphI GGTGA 3 cut(s) 259, 593, 646
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 682
Hpy188III TCNNGA 3 cut(s) 212, 289, 413
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 700
HpyCH4III ACNGT 2 cut(s) 652, 692
HpyCH4V TGCA 7 cut(s) 7, 151, 200, 236, 531, 571, 668
HpyF3I CTNAG 1 cut(s) 459
Hsp92II CATG 2 cut(s) 94, 117
HspAI GCGC 1 cut(s) 321
Kpn2I TCCGGA 2 cut(s) 211, 412
LmnI GCTCC 1 cut(s) 486
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 138
MaeI CTAG 3 cut(s) 33, 305, 479
MaeIII GTNAC 3 cut(s) 59, 349, 652
MboII GAAGA 4 cut(s) 180, 380, 461, 686
MluCI AATT 6 cut(s) 133, 216, 297, 384, 452, 699
MlyI GAGTC 1 cut(s) 457
MnlI CCTC 4 cut(s) 244, 364, 608, 664
MroI TCCGGA 2 cut(s) 211, 412
MseI TTAA 2 cut(s) 131, 723
MslI CAYNNNNRTG 1 cut(s) 112
MspA1I CMGCKG 1 cut(s) 474
MspI CCGG 4 cut(s) 212, 365, 413, 657
MspR9I CCNGG 2 cut(s) 365, 579
MvaI CCWGG 1 cut(s) 579
NciI CCSGG 1 cut(s) 365
NdeI CATATG 1 cut(s) 731
NlaIII CATG 2 cut(s) 94, 117
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 652
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 431, 677
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PshAI GACNNNNGTC 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 577
PspGI CCWGG 1 cut(s) 577
PspPI GGNCC 1 cut(s) 410
PstNI CAGNNNCTG 1 cut(s) 353
RsaI GTAC 3 cut(s) 118, 635, 689
RsaNI GTAC 3 cut(s) 117, 634, 688
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 2 cut(s) 131, 723
SatI GCNGC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 2 cut(s) 365, 579
SetI ASST 5 cut(s) 383, 447, 491, 600, 610
SfaNI GCATC 1 cut(s) 138
SinI GGWCC 1 cut(s) 410
SmiMI CAYNNNNRTG 1 cut(s) 112
SphI GCATGC 1 cut(s) 94
Sse9I AATT 6 cut(s) 133, 216, 297, 384, 452, 699
SsiI CCGC 1 cut(s) 474
SspMI CTAG 3 cut(s) 33, 305, 479
StyD4I CCNGG 2 cut(s) 363, 577
TaaI ACNGT 2 cut(s) 652, 692
TasI AATT 6 cut(s) 133, 216, 297, 384, 452, 699
TatI WGTACW 2 cut(s) 116, 687
TfiI GAWTC 2 cut(s) 431, 677
Tru1I TTAA 2 cut(s) 131, 723
Tru9I TTAA 2 cut(s) 131, 723
TscAI CASTG 2 cut(s) 58, 573
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 4 cut(s) 96, 102, 605, 718
TspRI CASTG 2 cut(s) 58, 573
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 3 cut(s) 133, 216, 452
XceI RCATGY 1 cut(s) 94
XspI CTAG 3 cut(s) 33, 305, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.