Rh7CG320300

psbP domain-containing protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009272
Physical Location & Seq
Forward (+)
34469008 .. 34471324
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG320300.1

Sequence Viewer

Length: 696 bp
ATGGCTTCCGTTGCGTCTTGGCATCCTCTGTTCCTTCGACCTCGCACAAGCCATTTCACCGCAATCTCGAACAACCCAGGCACCGCCATATGTAGAAAGAGCTATCTCCAATGTTGCAACAACAAAAAACAAGAACCACAACTAGAACAAAAAGAAAAACCAGTTTTTGGGATGCAATGCCAAGCCAAGAGAAGACAAGTTTTGCTTGGGACGACTTTTGCTGCATTTTCTTTTCCGGAAATTTATTCAAAAAACATTGCATTGGCCGAGAATGAGGATTTTCGTGTTTTCACCGATGATGTCAACAAGTTCCAGATATCAATTCCCCTAGACTGGCAAGTAGGCGCAGGAGAACCAAGTGGGTTCAAGTCAGTTACTGCTTTCTACCCGGAAGAGGGTTTTAGCTCAATTAGTGTCGTAATCACGGGGCTTGGTCCGGATTTTACAAAGATTGAATCCTTTGGCAAGGTTGAAGAATTTGCTGAGACTCTGGTCAGCGGACTAGATAGGAGCTGGCAAAGGCCAGCAGGAGTTTCAGCGAAACTCATAGATTGCAAATCATCTAAAGGGCTTTACTACATTGAGTATTCACTGCAAAATCCTGGTGAAAGTATGAAGCACCTCTATTCAGCTCTTGGGATGGCAAGCAACGGCTGGTACAACAGATTATATACCGTCACCGGCCAGGTATGGTAG

Protein Analysis

231

Amino Acids

25.87

Weight (kDa)

8.21

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 93 - 229 7e-23 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AccB7I CCANNNNNTGG 1 cut(s) 167
AccIII TCCGGA 2 cut(s) 235, 436
AciI CCGC 3 cut(s) 60, 84, 498
AcoI YGGCCR 2 cut(s) 264, 682
AcsI RAATTY 2 cut(s) 240, 476
AfaI GTAC 1 cut(s) 659
AfiI CCNNNNNNNGG 4 cut(s) 167, 333, 394, 395
AgsI TTSAA 4 cut(s) 249, 367, 455, 473
AjnI CCWGG 3 cut(s) 76, 601, 684
AluBI AGCT 4 cut(s) 102, 405, 513, 632
AluI AGCT 4 cut(s) 102, 405, 513, 632
Alw26I GTCTC 1 cut(s) 479
AlwNI CAGNNNCTG 1 cut(s) 377
Aor13HI TCCGGA 2 cut(s) 235, 436
AoxI GGCC 3 cut(s) 264, 521, 682
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 2 cut(s) 240, 476
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 434
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 4 cut(s) 49, 283, 617, 670
AvaII GGWCC 1 cut(s) 434
BanI GGYRCC 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 634
BceAI ACGGC 1 cut(s) 667
BciT130I CCWGG 3 cut(s) 78, 603, 686
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 3 cut(s) 143, 329, 503
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 4 cut(s) 78, 389, 603, 686
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 4 cut(s) 78, 389, 603, 686
BmsI GCATC 2 cut(s) 31, 162
BoxI GACNNNNGTC 1 cut(s) 491
BpiI GAAGAC 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 389
BsaJI CCNNGG 1 cut(s) 76
BsaWI WCCGGW 2 cut(s) 235, 436
Bsc4I CCNNNNNNNGG 4 cut(s) 167, 333, 394, 395
Bse118I RCCGGY 1 cut(s) 680
Bse1I ACTGG 2 cut(s) 161, 338
Bse3DI GCAATG 2 cut(s) 182, 255
BseAI TCCGGA 2 cut(s) 235, 436
BseBI CCWGG 3 cut(s) 78, 603, 686
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 3 cut(s) 22, 177, 645
BseLI CCNNNNNNNGG 4 cut(s) 167, 333, 394, 395
BseMI GCAATG 2 cut(s) 182, 255
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 2 cut(s) 161, 338
BseXI GCAGC 1 cut(s) 208
BshFI GGCC 3 cut(s) 266, 523, 684
BshNI GGYRCC 1 cut(s) 80
BsiSI CCGG 4 cut(s) 236, 389, 437, 681
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 4 cut(s) 167, 333, 394, 395
BsmAI GTCTC 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 3 cut(s) 266, 523, 684
Bsp13I TCCGGA 2 cut(s) 235, 436
BspACI CCGC 3 cut(s) 60, 84, 498
BspANI GGCC 3 cut(s) 266, 523, 684
BspCNI CTCAG 1 cut(s) 475
BspEI TCCGGA 2 cut(s) 235, 436
BspLI GGNNCC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 80
BsrDI GCAATG 2 cut(s) 182, 255
BsrFI RCCGGY 1 cut(s) 680
BsrI ACTGG 2 cut(s) 161, 338
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 1 cut(s) 76
Bst2UI CCWGG 3 cut(s) 78, 603, 686
Bst4CI ACNGT 1 cut(s) 676
Bst6I CTCTTC 1 cut(s) 387
BstC8I GCNNGC 3 cut(s) 515, 525, 646
BstDEI CTNAG 1 cut(s) 483
BstF5I GGATG 3 cut(s) 22, 177, 645
BstHHI GCGC 1 cut(s) 347
BstMAI GTCTC 1 cut(s) 479
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 78, 603, 686
BstPAI GACNNNNGTC 1 cut(s) 491
BstSCI CCNGG 4 cut(s) 76, 387, 601, 684
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 199
BsuRI GGCC 3 cut(s) 266, 523, 684
BtsCI GGATG 3 cut(s) 22, 177, 645
BtsI GCAGTG 1 cut(s) 590
BtsIMutI CAGTG 1 cut(s) 590
Cac8I GCNNGC 3 cut(s) 515, 525, 646
CaiI CAGNNNCTG 1 cut(s) 377
CfoI GCGC 1 cut(s) 347
Cfr10I RCCGGY 1 cut(s) 680
Cfr13I GGNCC 1 cut(s) 434
CseI GACGC 1 cut(s) 3
Csp6I GTAC 1 cut(s) 658
CviQI GTAC 1 cut(s) 658
DdeI CTNAG 1 cut(s) 483
EaeI YGGCCR 2 cut(s) 264, 682
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco32I GATATC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 434
EcoRII CCWGG 3 cut(s) 76, 601, 684
EcoRV GATATC 1 cut(s) 318
FaiI YATR 7 cut(s) 89, 91, 548, 614, 670, 672, 691
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 1 cut(s) 223
FauNDI CATATG 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 3 cut(s) 9, 184, 652
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 3 cut(s) 143, 329, 503
GlaI GCGC 1 cut(s) 346
GluI GCNGC 1 cut(s) 222
HaeIII GGCC 3 cut(s) 266, 523, 684
HapII CCGG 4 cut(s) 236, 389, 437, 681
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 347
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 2 cut(s) 455, 487
HpaII CCGG 4 cut(s) 236, 389, 437, 681
HphI GGTGA 4 cut(s) 49, 283, 617, 670
Hpy166II GTNNAC 1 cut(s) 304
Hpy188III TCNNGA 4 cut(s) 67, 236, 313, 437
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 676
HpyCH4V TGCA 6 cut(s) 117, 175, 224, 260, 555, 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 483
HspAI GCGC 1 cut(s) 345
Kpn2I TCCGGA 2 cut(s) 235, 436
LmnI GCTCC 1 cut(s) 510
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 2 cut(s) 31, 162
MaeI CTAG 3 cut(s) 143, 329, 503
MaeIII GTNAC 2 cut(s) 373, 676
MboII GAAGA 3 cut(s) 204, 404, 485
MluCI AATT 4 cut(s) 240, 321, 408, 476
MlyI GAGTC 1 cut(s) 481
MnlI CCTC 5 cut(s) 36, 51, 268, 388, 632
MroI TCCGGA 2 cut(s) 235, 436
MspA1I CMGCKG 1 cut(s) 498
MspI CCGG 4 cut(s) 236, 389, 437, 681
MspR9I CCNGG 4 cut(s) 78, 389, 603, 686
MvaI CCWGG 3 cut(s) 78, 603, 686
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 389
NdeI CATATG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 82
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 676
PfeI GAWTC 1 cut(s) 455
PflMI CCANNNNNTGG 1 cut(s) 167
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PshAI GACNNNNGTC 1 cut(s) 491
Psp6I CCWGG 3 cut(s) 76, 601, 684
PspGI CCWGG 3 cut(s) 76, 601, 684
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
SatI GCNGC 1 cut(s) 222
Sau96I GGNCC 1 cut(s) 434
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 4 cut(s) 78, 389, 603, 686
SetI ASST 8 cut(s) 43, 104, 407, 471, 515, 624, 634, 690
SfaNI GCATC 2 cut(s) 31, 162
SinI GGWCC 1 cut(s) 434
Sse9I AATT 4 cut(s) 240, 321, 408, 476
SsiI CCGC 3 cut(s) 60, 84, 498
SspMI CTAG 3 cut(s) 143, 329, 503
StyD4I CCNGG 4 cut(s) 76, 387, 601, 684
TaaI ACNGT 1 cut(s) 676
TaqI TCGA 2 cut(s) 37, 68
TasI AATT 4 cut(s) 240, 321, 408, 476
TfiI GAWTC 1 cut(s) 455
TscAI CASTG 1 cut(s) 597
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 1 cut(s) 629
TspRI CASTG 1 cut(s) 597
Van91I CCANNNNNTGG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 2 cut(s) 240, 476
XspI CTAG 3 cut(s) 143, 329, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.