Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000117.1

Orthogroup ID

OG0009272

Physical Location & Seq

Genomic Coordinates Forward (+)

48121 .. 49793

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000117.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atggcttccgttgcgtcttggcatcctctgttccttcgacctcgcacaagccatttcaccgcaacctcgaacaacccaggcaccgccatatgtagaaagagctatctccaatgttgcaacaacaaaaaacaagaaccacaactagaacaagaagaaaaaccagtttttgggatgcaatgccaagccaagagaagacaagttttgcttgggacgacttttgctgcattttcttttccggaaatttattcaaaagacattgcattggccgagaatgatggttttcgtgttttcaccgatgatgtcaacaagttccagatatcaattcctctagactggcaagtaggcgcaggagaaccaagtgggttcaagtcagttactgctttctacccggaagagggttttagctcaattagtgtcgtaatcacggggcttggtccggattttacaaagattgaatcctttggcaaggttgaagaatttgctgagactctggtcagcggactagataggagctggcaaaggccagcaggagtttcagcgaaactcatagattgcaaatcatctaaagggctttactacattgagtattcactgcaaaatcctggtgaaagtatgaagcacctctattcagctcttgggatggcaaccaacggctggtacaacagattatacactgtcaccggccagtttgcagaggaagaatcggataagtacagttccaaaattgagaaggctgtaaaatcctttaagttcatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

252

Amino Acids

28.21

Weight (kDa)

6.84

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76450
fragaria_vesca	FvH4_5g26100 FvH4_5g26100 FvH4_5g26100 FvH4_5g26100 FvH4_5g26100 FvH4_5g26100
malus_domestica	MD16G1283100.v1.1
prunus_persica	Prupe.5G005500_v2.0.a1 Prupe.5G005500_v2.0.a1
pyrus_communis	pycom16g26200
rosa_chinensis	RchiOBHm_Chr7g0216691
rosa_laevigata	RLG00000002550
rosa_multiflora	Rmu_ssc0000117.1_g000013
rosa_roxburghii	Rroxscaffold_3G00243010
rosa_rugosa	Rorug07G0161800 Rorug07G0161900
rosa_samantha	Rh7AG301600 Rh7BG293400 Rh7CG320300 Rh7DG302200
rosa_wichuraiana	Rw7G025590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccB7I	CCANNNNNTGG	2 cut(s)	167, 654
AccIII	TCCGGA	2 cut(s)	235, 436
AciI	CCGC	3 cut(s)	60, 84, 498
AcoI	YGGCCR	2 cut(s)	264, 682
AcsI	RAATTY	2 cut(s)	240, 476
AfaI	GTAC	2 cut(s)	659, 713
AfiI	CCNNNNNNNGG	4 cut(s)	167, 394, 395, 654
AgsI	TTSAA	4 cut(s)	249, 367, 455, 473
AjnI	CCWGG	2 cut(s)	76, 601
AluBI	AGCT	4 cut(s)	102, 405, 513, 632
AluI	AGCT	4 cut(s)	102, 405, 513, 632
Alw26I	GTCTC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	377
Aor13HI	TCCGGA	2 cut(s)	235, 436
AoxI	GGCC	3 cut(s)	264, 521, 682
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	2 cut(s)	240, 476
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	4 cut(s)	49, 283, 617, 670
AvaII	GGWCC	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	2 cut(s)	269, 634
BceAI	ACGGC	1 cut(s)	667
BciT130I	CCWGG	2 cut(s)	78, 603
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	479
BfaI	CTAG	3 cut(s)	143, 329, 503
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	3 cut(s)	78, 389, 603
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	3 cut(s)	78, 389, 603
BmsI	GCATC	2 cut(s)	31, 162
BoxI	GACNNNNGTC	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	76
BsaWI	WCCGGW	2 cut(s)	235, 436
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 394, 395, 654
Bse118I	RCCGGY	1 cut(s)	680
Bse1I	ACTGG	3 cut(s)	161, 338, 685
Bse3DI	GCAATG	2 cut(s)	182, 255
BseAI	TCCGGA	2 cut(s)	235, 436
BseBI	CCWGG	2 cut(s)	78, 603
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	3 cut(s)	22, 177, 645
BseLI	CCNNNNNNNGG	4 cut(s)	167, 394, 395, 654
BseMI	GCAATG	2 cut(s)	182, 255
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	3 cut(s)	161, 338, 685
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	3 cut(s)	266, 523, 684
BshNI	GGYRCC	1 cut(s)	80
BsiSI	CCGG	4 cut(s)	236, 389, 437, 681
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	4 cut(s)	167, 394, 395, 654
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	3 cut(s)	266, 523, 684
Bsp13I	TCCGGA	2 cut(s)	235, 436
BspACI	CCGC	3 cut(s)	60, 84, 498
BspANI	GGCC	3 cut(s)	266, 523, 684
BspCNI	CTCAG	1 cut(s)	475
BspEI	TCCGGA	2 cut(s)	235, 436
BspLI	GGNNCC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	182, 255
BsrFI	RCCGGY	1 cut(s)	680
BsrI	ACTGG	3 cut(s)	161, 338, 685
BssAI	RCCGGY	1 cut(s)	680
BssECI	CCNNGG	1 cut(s)	76
Bst2UI	CCWGG	2 cut(s)	78, 603
Bst4CI	ACNGT	2 cut(s)	676, 716
Bst6I	CTCTTC	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	515, 525
BstDEI	CTNAG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	22, 177, 645
BstHHI	GCGC	1 cut(s)	347
BstMAI	GTCTC	1 cut(s)	479
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	78, 603
BstPAI	GACNNNNGTC	1 cut(s)	491
BstSCI	CCNGG	3 cut(s)	76, 387, 601
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	266, 523, 684
BtsCI	GGATG	3 cut(s)	22, 177, 645
BtsI	GCAGTG	1 cut(s)	590
BtsIMutI	CAGTG	2 cut(s)	590, 672
Cac8I	GCNNGC	2 cut(s)	515, 525
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	680
Cfr13I	GGNCC	1 cut(s)	434
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	2 cut(s)	658, 712
CviQI	GTAC	2 cut(s)	658, 712
DdeI	CTNAG	1 cut(s)	483
EaeI	YGGCCR	2 cut(s)	264, 682
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco32I	GATATC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	434
EcoRII	CCWGG	2 cut(s)	76, 601
EcoRV	GATATC	1 cut(s)	318
FaiI	YATR	7 cut(s)	89, 91, 548, 614, 670, 755, 757
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	223
FauNDI	CATATG	2 cut(s)	89, 755
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	3 cut(s)	9, 184, 652
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	3 cut(s)	143, 329, 503
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	3 cut(s)	266, 523, 684
HapII	CCGG	4 cut(s)	236, 389, 437, 681
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	1 cut(s)	347
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	3 cut(s)	455, 487, 701
HpaII	CCGG	4 cut(s)	236, 389, 437, 681
HphI	GGTGA	4 cut(s)	49, 283, 617, 670
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	706
Hpy188III	TCNNGA	4 cut(s)	236, 313, 329, 437
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	44, 724
HpyCH4III	ACNGT	2 cut(s)	676, 716
HpyCH4V	TGCA	7 cut(s)	117, 175, 224, 260, 555, 595, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	483
HspAI	GCGC	1 cut(s)	345
Kpn2I	TCCGGA	2 cut(s)	235, 436
LmnI	GCTCC	1 cut(s)	510
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	2 cut(s)	31, 162
MaeI	CTAG	3 cut(s)	143, 329, 503
MaeIII	GTNAC	2 cut(s)	373, 676
MboII	GAAGA	5 cut(s)	164, 204, 404, 485, 710
MluCI	AATT	5 cut(s)	240, 321, 408, 476, 723
MlyI	GAGTC	1 cut(s)	481
MnlI	CCTC	7 cut(s)	36, 51, 76, 336, 388, 632, 688
MroI	TCCGGA	2 cut(s)	235, 436
MseI	TTAA	1 cut(s)	747
MspA1I	CMGCKG	1 cut(s)	498
MspI	CCGG	4 cut(s)	236, 389, 437, 681
MspR9I	CCNGG	3 cut(s)	78, 389, 603
MvaI	CCWGG	2 cut(s)	78, 603
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	389
NdeI	CATATG	2 cut(s)	89, 755
NlaIV	GGNNCC	1 cut(s)	82
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	676
PfeI	GAWTC	2 cut(s)	455, 701
PflMI	CCANNNNNTGG	2 cut(s)	167, 654
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PshAI	GACNNNNGTC	1 cut(s)	491
Psp6I	CCWGG	2 cut(s)	76, 601
PspGI	CCWGG	2 cut(s)	76, 601
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	434
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	2 cut(s)	659, 713
RsaNI	GTAC	2 cut(s)	658, 712
SaqAI	TTAA	1 cut(s)	747
SatI	GCNGC	1 cut(s)	222
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	3 cut(s)	78, 389, 603
SetI	ASST	8 cut(s)	43, 68, 104, 407, 471, 515, 624, 634
SfaNI	GCATC	2 cut(s)	31, 162
SinI	GGWCC	1 cut(s)	434
Sse9I	AATT	5 cut(s)	240, 321, 408, 476, 723
SsiI	CCGC	3 cut(s)	60, 84, 498
SspMI	CTAG	3 cut(s)	143, 329, 503
StyD4I	CCNGG	3 cut(s)	76, 387, 601
TaaI	ACNGT	2 cut(s)	676, 716
TaqI	TCGA	2 cut(s)	37, 68
TasI	AATT	5 cut(s)	240, 321, 408, 476, 723
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	2 cut(s)	455, 701
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TscAI	CASTG	2 cut(s)	597, 679
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	2 cut(s)	629, 742
TspRI	CASTG	2 cut(s)	597, 679
Van91I	CCANNNNNTGG	2 cut(s)	167, 654
VpaK11BI	GGWCC	1 cut(s)	434
XapI	RAATTY	2 cut(s)	240, 476
XbaI	TCTAGA	1 cut(s)	328
XspI	CTAG	3 cut(s)	143, 329, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.