RLG00000002550

psbP domain-containing protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009272
Physical Location & Seq
Reverse (-)
36173253 .. 36174933
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002550

Sequence Viewer

Length: 759 bp
ATGGCTTCCGTTGCGTCTTGGCATCCTCTGTTCCTTCGACCTCGCACAAGCCATTTCACCGCAACCTCGAACAACCCAGGCACCGCCATATGTAGAAAGAGCTATCTCCAATGTTGCAACAACAAAAAACAAGAACCACAACTAGAACAAGAAGAAAAACCAGTTTTTGGGATGCAATGCCAAGCCAAGAGAAGACAAGTTTTGCTTGGGACGACTTTTGCTGCATTTTCTTTTCCGGAAATTTATTTAAAAAACATTGCATTGGCCGAGAATGAGGGTTTTCGTGTTTTCACTGATGATGTCAACAAGTTCCAGATATCAATTCCCCTAGACTGGCAAGTAGGCGCAGGAGAACCAAGTGGGTTCAAGTCAGTTACTGCTTTCTACCCGGAAGAGGGTTTTAGCTCAATTAGTGTCGTAATCACAGGGCTTGGTCCGGATTTTACAAAGATGGAATCCTTTGGCAAGGTTGAAGAATTTGCTGAGACTCTGGTCAGCGGACTAGATAGGAGCTGGCAAAGGCCAGCAGGAGTTTCAGCAAAACTCATAGATTGCAAATCATCTAAAGGGCTTTACTACATTGAGTATTCACTGCAAAATCCTGGTGAAAGTATGAAGCACCTCTATTCTGCTCTTGGGATGGCAAGCAACGGCTGGTACAACAGATTATATACCGTCACCGGCCAGTTTGCAGAGGAAGAATCGGATAAGTACAGTTCCAAAATTGAGAAGGCTGTAAAATCCTTTAAGTTCATATGA

Protein Analysis

253

Amino Acids

28.25

Weight (kDa)

7.58

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 92 - 251 2.8e-29 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AccB7I CCANNNNNTGG 1 cut(s) 167
AccIII TCCGGA 2 cut(s) 235, 436
AciI CCGC 3 cut(s) 60, 84, 498
AcoI YGGCCR 2 cut(s) 264, 682
AcsI RAATTY 2 cut(s) 240, 476
AfaI GTAC 2 cut(s) 659, 713
AfiI CCNNNNNNNGG 4 cut(s) 167, 333, 394, 395
AgsI TTSAA 2 cut(s) 367, 473
AjnI CCWGG 2 cut(s) 76, 601
AluBI AGCT 3 cut(s) 102, 405, 513
AluI AGCT 3 cut(s) 102, 405, 513
Alw26I GTCTC 1 cut(s) 479
AlwNI CAGNNNCTG 1 cut(s) 377
Aor13HI TCCGGA 2 cut(s) 235, 436
AoxI GGCC 3 cut(s) 264, 521, 682
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 2 cut(s) 240, 476
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 434
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 3 cut(s) 49, 617, 670
AvaII GGWCC 1 cut(s) 434
BanI GGYRCC 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 445, 634
BceAI ACGGC 1 cut(s) 667
BciT130I CCWGG 2 cut(s) 78, 603
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 3 cut(s) 143, 329, 503
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 3 cut(s) 78, 389, 603
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 3 cut(s) 78, 389, 603
BmsI GCATC 2 cut(s) 31, 162
BoxI GACNNNNGTC 1 cut(s) 491
BpiI GAAGAC 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 389
BsaJI CCNNGG 1 cut(s) 76
BsaWI WCCGGW 2 cut(s) 235, 436
Bsc4I CCNNNNNNNGG 4 cut(s) 167, 333, 394, 395
Bse118I RCCGGY 1 cut(s) 680
Bse1I ACTGG 3 cut(s) 161, 338, 685
Bse3DI GCAATG 2 cut(s) 182, 255
BseAI TCCGGA 2 cut(s) 235, 436
BseBI CCWGG 2 cut(s) 78, 603
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 3 cut(s) 22, 177, 645
BseLI CCNNNNNNNGG 4 cut(s) 167, 333, 394, 395
BseMI GCAATG 2 cut(s) 182, 255
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 3 cut(s) 161, 338, 685
BseXI GCAGC 1 cut(s) 208
BshFI GGCC 3 cut(s) 266, 523, 684
BshNI GGYRCC 1 cut(s) 80
BsiSI CCGG 4 cut(s) 236, 389, 437, 681
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 4 cut(s) 167, 333, 394, 395
BsmAI GTCTC 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 3 cut(s) 266, 523, 684
Bsp13I TCCGGA 2 cut(s) 235, 436
BspACI CCGC 3 cut(s) 60, 84, 498
BspANI GGCC 3 cut(s) 266, 523, 684
BspCNI CTCAG 1 cut(s) 475
BspEI TCCGGA 2 cut(s) 235, 436
BspLI GGNNCC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 80
BsrDI GCAATG 2 cut(s) 182, 255
BsrFI RCCGGY 1 cut(s) 680
BsrI ACTGG 3 cut(s) 161, 338, 685
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 78, 603
Bst4CI ACNGT 2 cut(s) 676, 716
Bst6I CTCTTC 1 cut(s) 387
BstC8I GCNNGC 3 cut(s) 515, 525, 646
BstDEI CTNAG 1 cut(s) 483
BstF5I GGATG 3 cut(s) 22, 177, 645
BstHHI GCGC 1 cut(s) 347
BstMAI GTCTC 1 cut(s) 479
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 78, 603
BstPAI GACNNNNGTC 1 cut(s) 491
BstSCI CCNGG 3 cut(s) 76, 387, 601
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 199
BsuRI GGCC 3 cut(s) 266, 523, 684
BtsCI GGATG 3 cut(s) 22, 177, 645
BtsI GCAGTG 1 cut(s) 590
BtsIMutI CAGTG 2 cut(s) 291, 590
Cac8I GCNNGC 3 cut(s) 515, 525, 646
CaiI CAGNNNCTG 1 cut(s) 377
CfoI GCGC 1 cut(s) 347
Cfr10I RCCGGY 1 cut(s) 680
Cfr13I GGNCC 1 cut(s) 434
CseI GACGC 1 cut(s) 3
Csp6I GTAC 2 cut(s) 658, 712
CviQI GTAC 2 cut(s) 658, 712
DdeI CTNAG 1 cut(s) 483
DraI TTTAAA 1 cut(s) 249
EaeI YGGCCR 2 cut(s) 264, 682
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco32I GATATC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 434
EcoRII CCWGG 2 cut(s) 76, 601
EcoRV GATATC 1 cut(s) 318
FaiI YATR 8 cut(s) 89, 91, 548, 614, 670, 672, 755, 757
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 1 cut(s) 223
FauNDI CATATG 2 cut(s) 89, 755
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 3 cut(s) 9, 184, 652
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 3 cut(s) 143, 329, 503
GlaI GCGC 1 cut(s) 346
GluI GCNGC 1 cut(s) 222
HaeIII GGCC 3 cut(s) 266, 523, 684
HapII CCGG 4 cut(s) 236, 389, 437, 681
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 347
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 3 cut(s) 455, 487, 701
HpaII CCGG 4 cut(s) 236, 389, 437, 681
HphI GGTGA 3 cut(s) 49, 617, 670
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 706
Hpy188III TCNNGA 3 cut(s) 236, 313, 437
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 2 cut(s) 44, 724
HpyCH4III ACNGT 2 cut(s) 676, 716
HpyCH4V TGCA 7 cut(s) 117, 175, 224, 260, 555, 595, 692
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 483
HspAI GCGC 1 cut(s) 345
Kpn2I TCCGGA 2 cut(s) 235, 436
LmnI GCTCC 1 cut(s) 510
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 2 cut(s) 31, 162
MaeI CTAG 3 cut(s) 143, 329, 503
MaeIII GTNAC 2 cut(s) 373, 676
MboII GAAGA 5 cut(s) 164, 204, 404, 485, 710
MluCI AATT 5 cut(s) 240, 321, 408, 476, 723
MlyI GAGTC 1 cut(s) 481
MnlI CCTC 7 cut(s) 36, 51, 76, 268, 388, 632, 688
MroI TCCGGA 2 cut(s) 235, 436
MseI TTAA 2 cut(s) 248, 747
MspA1I CMGCKG 1 cut(s) 498
MspI CCGG 4 cut(s) 236, 389, 437, 681
MspR9I CCNGG 3 cut(s) 78, 389, 603
MvaI CCWGG 2 cut(s) 78, 603
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 389
NdeI CATATG 2 cut(s) 89, 755
NlaIV GGNNCC 1 cut(s) 82
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 676
PfeI GAWTC 2 cut(s) 455, 701
PflMI CCANNNNNTGG 1 cut(s) 167
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PshAI GACNNNNGTC 1 cut(s) 491
Psp6I CCWGG 2 cut(s) 76, 601
PspGI CCWGG 2 cut(s) 76, 601
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 377
RsaI GTAC 2 cut(s) 659, 713
RsaNI GTAC 2 cut(s) 658, 712
SaqAI TTAA 2 cut(s) 248, 747
SatI GCNGC 1 cut(s) 222
Sau96I GGNCC 1 cut(s) 434
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 3 cut(s) 78, 389, 603
SetI ASST 7 cut(s) 43, 68, 104, 407, 471, 515, 624
SfaNI GCATC 2 cut(s) 31, 162
SinI GGWCC 1 cut(s) 434
Sse9I AATT 5 cut(s) 240, 321, 408, 476, 723
SsiI CCGC 3 cut(s) 60, 84, 498
SspMI CTAG 3 cut(s) 143, 329, 503
StyD4I CCNGG 3 cut(s) 76, 387, 601
TaaI ACNGT 2 cut(s) 676, 716
TaqI TCGA 2 cut(s) 37, 68
TasI AATT 5 cut(s) 240, 321, 408, 476, 723
TatI WGTACW 1 cut(s) 711
TfiI GAWTC 2 cut(s) 455, 701
Tru1I TTAA 2 cut(s) 248, 747
Tru9I TTAA 2 cut(s) 248, 747
TscAI CASTG 2 cut(s) 298, 597
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 2 cut(s) 629, 742
TspRI CASTG 2 cut(s) 298, 597
Van91I CCANNNNNTGG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 2 cut(s) 240, 476
XspI CTAG 3 cut(s) 143, 329, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.