Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002113

Physical Location & Seq

Genomic Coordinates Reverse (-)

18185383 .. 18201920

Gene Structure 16538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26810.t15

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3300 bp

ATGGAGATGAGCTGCCAGTCGAATGGCAATTCGAGTGATATTCAACCGGTCTGTAATTCTGGGGGGACATCGTACCAGGACAAGAGTTACTCGGGGTATATGCCTCCTTCTCCTTCTTTTGTGAGTGGATGGATGTATGTTAATGAACAAGGACAAATGTGCGGTCCGTATATTCAGCAGCAGTTGTATGAAGGTTTATCTACTGGCTTTTTGCCAGACGAGCTTCCTGTCTATCCTGTGGTAAATGGGGCATTAATAAACCCAATACCATTGAAGTACTTCAAGCTGTTTCCTAATCATGTTACTACTGGGTTTGCATATCTGAGTCTGGCCAGCATCTCAAGCGCAAGCACGCCTACGAATTCTCTTAAATCTTGCAATGGGGATTTGGCTACATCTAGTATACCTACACCCATTGCTACTAGTTATCCTGATTTACAGAATGATTCCACTTCACAGGCCAACAGCAACACTGATTTTTCCAGTAAGCTGATATTGAAATCCGAAGCACCTAACCAAGATACCTCATATCAGTCACTGTCAAGTAAAGAGTCTTGCTGGTTGTATGAGGATGAGGAAGGGAAGAGAAATGGGCCATATTCTCTTTTCGAATTAAATTCTTGGCATCAATATGGATATCTTCGGGATACACTGATGATTTATCACGTCAAGAATAAGTGTAAACCCTTCACACTGTCATCTGTTAAATGTTCATGGAAACTTGATGGATCTGAAACCATCACCAAATTTGATACCAAATGTAATCAGTCTGGCTCATTTGTAAGCATTATATCTGAAGTTGCGGAGGATGTTTCTTCCCAACTGCACTACGGAATTTTGAAATCAGCTCGTAGAGTTGTTTTAGACGAGATAATCAGCAATGTGATTGCTGAGTTTGTTACCACAACTAAAGCTCAGAGACTTAACCAGAGTATGAAGACCTGCTCCTTGGATGCAAAAAGGTCCGAAATTGATGGTGAGAACCCAGCTCTTTCAAGTGAGGCCGGAGCTGCCGACTGTGTTGCTCAAAGGACATTTATCAATCAAGTTTCTCCAGAGCCTTTGCCGAACACTAAATCTGTTGGAAGCATTCATACCTATTGGGATTCTTATGCAGTTGTTTGTGGAATGCTCTTCAATCATTGCATGGAAGTCATGTGGAATGCTGTCTTTTATGATTCAGTGGCGGAATATTCATCTGCTTGGAGGAGAAGGAAACTATGGACTGGCTCTCCGTCATTCTGGATACCTCCTAATAGATGTGGTGACAGGGTGGAGAAGGTCACAGTATTACCTCATGAAAATTTATCTGATGGTTATGATGATGACTGTCCCCCTGGTTTCGAACTGTTGGGAACTGAGTTGGGGTGTCATGCTCAGCCATCATTGATGTCTTCATCGGTTCTAATGGTGGAAAAGCCGACTAAAAAGATAGGTCCCTCATACGAAGACATGAAGTACATTGTAGAGCATATTGAAAATGAACTCCATTTGTCTGCAAAGAGTTCATTGACTGAGTATGTTGGATCCATTGTTGATGAGGAAGTGAGTAAACGAGTTAATTCGTCCAAAGAAGAGAATTCAATGAAGGACACTGTGGTCTGTTCCCCAAGGAACATGGGTGGTTCATCTGACCTATGCCACAAATTGAAGACTTCAAATAACACATCTGCAGAAATAATTCTGGCTGATTCCCTAACTCCACAAGCAGAAAAACCTTTCCATAATTCTTTGCCTGAAAATCGAATGTCTAATTTTCTGGTAAGTGCTTTTAAGGAAGTATGTTCTTATGTTGATGATGCTGTTGTGGACCAAGAAGTAAATGAACCATCACCCCATGGACTGATAGCCAATGTTAAAACTCTTGGACAATCACCTGTCTGCAAATTCCGACCTTCAAGGTCAGAAGAATCTATTCCTAAGATTGGAGCATATGTTGCTACAGCAATGTTGCGGAAGAAACTCCATGATGATATTATTAGAGAACTGAAATCTTTCATTGATTTGGCTCTTAATAAGTTTCTTGCATCATGGCGAACTTCAAGGAAGAACCATATCTGTAATGAGGAAAAAGCATGCAACACTAATAAAAAAGAATCAAAGCATCGTCTCAGTTCTGTCACTGCAGAAGTATCTCCAGTGATGGATGAATATACATATCAACGCAAGAGGTTGTTGCGGAAGAAGTCGGATTCTTCTGGACTTGTAACTGTAGGGTTAAAGAGCGGCGAGACAGTTGAAAAGTCAAAGAAGCTACATGTTGCTAGAGATGTTCTGAATAATGCTACTCTGATTTCTAAAAAAAGAAGTCTAAGTAAACCTCAAACTGAATCATCTGTTGATGCCGTATCTGTAAAAGTCAATTCTAAAAGGGTTTCATCAACTGATAAATCAGCATCTAAGAATGCTAGTATTCGGAAGCCATTGAGGGGTTATTATGAACAAAGTTGTGAGCCCATTAACGATGTTATTGATGGCATCAGCTCTATTAGGGGACCTCAAATTGAATTATCGATTGGTGCCATTGCCTTGCAAGCCATCGATACGAGTTGTTCATCTGCTGATACGGTAGCAGCTAATAATGCTAGTAGTCAGAAACGATTGAAGGTTTCTCTTGCAGTTGAAGGTATTGAACCCATGAAATGCATGCCTAAACCTAGTAAAAGGATGGTCTCAGCTCATGTTAACAATGATATTGAGAAAGTTGTAAATAGCCATGGTCATAATGGTCAGCTTAAAGGAGAGCCTCTACCTAAGGTGTTGAAGCAGAAAAGAGAGCGTCCAGTTGGTGGCTCACAATTGCCACATCCCAAAAAGGTCTTGAAAGTAGCTGATGATGTTCTCAAGCAAGCAGCAAACATCCCAGGTTCAGTAAGAAAGGCCCGGTCCACTAAGTCAAAGACATCAAATCCTTGCCCTAAATCTGATGGATGTGCCCGTGCTTCAATTAATGGCTGGGAATGGCATAGGTGGTCACTAAACGCAAGTCCTGCTGAAAGAGCTCGTGTTAGGGGAATCAAATATGTTAACACCCAGCAACTGACTTCTGAAACTAATACACCACAGTTGTCAAATGGCAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAGATGCGTAGTCTTCTTGCTGCTGCTGACGGAGCTGACCTTTTGAAAAGCACTCAATTAAAGGCAAGGAAAAAGCTTTTACGTTTCCAGCGGAGCAAGATACATGATTGGGGTCTTATAGCCTTGGAGCCAATTGAGGCAGAAGATTTTGTTATTGAATATGTTGGAGAATTGATTCGTCCCCAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009909 GO:0009987 GO:0010228 GO:0010452 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0051568 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

1100

Amino Acids

121.33

Weight (kDa)

8.72

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GYF	PF02213	187 - 225	1.6e-06	GYF domain
SET	PF00856	1073 - 1178	1.2e-27	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400
fragaria_vesca	FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810
malus_domestica	MD02G1278400.v1.1 MD07G1046400.v1.1 MD07G1046500.v1.1
prunus_persica	Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1
pyrus_communis	pycom02g23860
rosa_chinensis	RchiOBHm_Chr7g0217731
rosa_laevigata	RLG00000002444
rosa_multiflora	Rmu_co8471317.1_g000001 Rmu_sc0000202.1_g000011
rosa_roxburghii	Rroxscaffold_3G00241740
rosa_rugosa	Rorug07G0170800 Rorug07G0170800
rosa_samantha	Rh7AG311300 Rh7BG303200 Rh7CG330300 Rh7DG311100
rosa_wichuraiana	Rw7G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1598
Acc36I	ACCTGC	1 cut(s)	950
AccB1I	GGYRCC	1 cut(s)	2519
AccB7I	CCANNNNNTGG	1 cut(s)	2789
AccBSI	CCGCTC	1 cut(s)	2226
AccI	GTMKAC	1 cut(s)	403
AciI	CCGC	7 cut(s)	162, 803, 1187, 1954, 2179, 2226, 3199
AclWI	GGATC	3 cut(s)	736, 1521, 1534
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	7 cut(s)	361, 616, 746, 834, 1303, 1579, 1886
AcuI	CTGAAG	1 cut(s)	816
AfaI	GTAC	3 cut(s)	74, 278, 1460
AfiI	CCNNNNNNNGG	3 cut(s)	1925, 2429, 2789
AflIII	ACRYGT	1 cut(s)	2257
AgeI	ACCGGT	1 cut(s)	46
AhlI	ACTAGT	1 cut(s)	422
AjiI	CACGTC	1 cut(s)	667
AjnI	CCWGG	4 cut(s)	75, 1336, 2863, 3291
AjuI	GAANNNNNNNTTGG	2 cut(s)	2499, 2531
Alw21I	GWGCWC	1 cut(s)	3004
Alw26I	GTCTC	4 cut(s)	913, 2114, 2225, 2677
AlwI	GGATC	3 cut(s)	736, 1521, 1534
AlwNI	CAGNNNCTG	2 cut(s)	538, 3040
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	5 cut(s)	330, 459, 593, 1002, 2880
ApeKI	GCWGC	7 cut(s)	12, 178, 1010, 2573, 2852, 3128, 3131
ApoI	RAATTY	7 cut(s)	361, 616, 746, 834, 1303, 1579, 1886
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
AseI	ATTAAT	2 cut(s)	254, 2949
AsiGI	ACCGGT	1 cut(s)	46
Asp700I	GAANNNNTTC	5 cut(s)	278, 1680, 1914, 1994, 3282
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	8 cut(s)	164, 593, 963, 1436, 1810, 2495, 2881, 2886
AsuC2I	CCSGG	1 cut(s)	2884
AsuHPI	GGTGA	6 cut(s)	733, 989, 1277, 1824, 1866, 3118
AsuII	TTCGAA	2 cut(s)	609, 1344
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	6 cut(s)	164, 963, 1436, 1810, 2495, 2886
AxyI	CCTNAGG	1 cut(s)	2754
BaeGI	GKGCMC	1 cut(s)	2938
BalI	TGGCCA	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	1526
BanI	GGYRCC	1 cut(s)	2519
BanII	GRGCYC	2 cut(s)	2457, 3004
BarI	GAAGNNNNNNTAC	2 cut(s)	1078, 1110
BauI	CACGAG	1 cut(s)	3003
BbsI	GAAGAC	5 cut(s)	944, 1386, 1455, 1658, 3113
Bbv12I	GWGCWC	1 cut(s)	3004
BbvI	GCAGC	6 cut(s)	190, 997, 2585, 2864, 3115, 3118
BceAI	ACGGC	1 cut(s)	2330
BcgI	CGANNNNNNTGC	2 cut(s)	1004, 1038
BciT130I	CCWGG	4 cut(s)	77, 1338, 2865, 3293
BciVI	GTATCC	2 cut(s)	640, 1239
BcnI	CCSGG	1 cut(s)	2884
BcoDI	GTCTC	4 cut(s)	913, 2114, 2225, 2677
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	6 cut(s)	399, 423, 2265, 2409, 2586, 2658
BfmI	CTRYAG	4 cut(s)	1671, 1941, 2124, 2211
BfuAI	ACCTGC	1 cut(s)	950
BfuI	GTATCC	2 cut(s)	640, 1239
BisI	GCNGC	8 cut(s)	13, 179, 1011, 2227, 2574, 2853, 3129, 3132
BlpI	GCTNAGC	1 cut(s)	1377
BlsI	GCNGC	8 cut(s)	14, 180, 1012, 2228, 2575, 2854, 3130, 3133
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	5 cut(s)	77, 1338, 2865, 2884, 3293
Bme18I	GGWCC	6 cut(s)	164, 963, 1436, 1810, 2495, 2886
BmeT110I	CYCGRG	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	667
BmgT120I	GGNCC	8 cut(s)	164, 593, 963, 1436, 1810, 2495, 2881, 2886
BmiI	GGNNCC	5 cut(s)	1438, 1528, 2496, 2521, 3237
BmrFI	CCNGG	5 cut(s)	77, 1338, 2865, 2884, 3293
BmrI	ACTGGG	1 cut(s)	318
BmuI	ACTGGG	1 cut(s)	318
BpiI	GAAGAC	5 cut(s)	944, 1386, 1455, 1658, 3113
BpmI	CTGGAG	2 cut(s)	1038, 2121
Bpu1102I	GCTNAGC	1 cut(s)	1377
Bpu14I	TTCGAA	2 cut(s)	609, 1344
BpuEI	CTTGAG	2 cut(s)	325, 2828
BpuMI	CCSGG	1 cut(s)	2884
Bsa29I	ATCGAT	2 cut(s)	2513, 2541
BsaI	GGTCTC	1 cut(s)	2677
BsaJI	CCNNGG	8 cut(s)	948, 1336, 1610, 1837, 2716, 2863, 3231, 3291
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	4 cut(s)	1216, 1246, 1920, 1950
Bsc4I	CCNNNNNNNGG	3 cut(s)	1925, 2429, 2789
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	7 cut(s)	16, 208, 313, 483, 1231, 2138, 2783
Bse21I	CCTNAGG	1 cut(s)	2754
Bse3DI	GCAATG	6 cut(s)	385, 414, 886, 1141, 1953, 2523
BseBI	CCWGG	4 cut(s)	77, 1338, 2865, 3293
BseCI	ATCGAT	2 cut(s)	2513, 2541
BseDI	CCNNGG	8 cut(s)	948, 1336, 1610, 1837, 2716, 2863, 3231, 3291
BseLI	CCNNNNNNNGG	3 cut(s)	1925, 2429, 2789
BseMI	GCAATG	6 cut(s)	385, 414, 886, 1141, 1953, 2523
BseMII	CTCAG	8 cut(s)	314, 882, 929, 1350, 1391, 1506, 2125, 2688
BseNI	ACTGG	7 cut(s)	16, 208, 313, 483, 1231, 2138, 2783
BseRI	GAGGAG	1 cut(s)	1222
BseSI	GKGCMC	1 cut(s)	2938
BseXI	GCAGC	6 cut(s)	190, 997, 2585, 2864, 3115, 3118
BseYI	CCCAGC	3 cut(s)	985, 2955, 3033
BsgI	GTGCAG	1 cut(s)	809
BshFI	GGCC	5 cut(s)	332, 461, 595, 1004, 2882
BshNI	GGYRCC	1 cut(s)	2519
BshTI	ACCGGT	1 cut(s)	46
BshVI	ATCGAT	2 cut(s)	2513, 2541
BsiHKAI	GWGCWC	1 cut(s)	3004
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	3 cut(s)	47, 1005, 2884
BslFI	GGGAC	5 cut(s)	79, 1317, 1422, 2508, 3273
BslI	CCNNNNNNNGG	3 cut(s)	1925, 2429, 2789
BsmAI	GTCTC	4 cut(s)	913, 2114, 2225, 2677
BsmBI	CGTCTC	1 cut(s)	2114
BsmFI	GGGAC	5 cut(s)	79, 1317, 1422, 2508, 3273
BsmI	GAATGC	4 cut(s)	1089, 1134, 1168, 2410
BsnI	GGCC	5 cut(s)	332, 461, 595, 1004, 2882
Bso31I	GGTCTC	1 cut(s)	2677
BsoBI	CYCGRG	1 cut(s)	91
Bsp119I	TTCGAA	2 cut(s)	609, 1344
Bsp1286I	GDGCHC	3 cut(s)	2457, 2938, 3004
Bsp143I	GATC	2 cut(s)	728, 1526
Bsp1720I	GCTNAGC	1 cut(s)	1377
Bsp19I	CCATGG	2 cut(s)	1837, 2716
BspACI	CCGC	7 cut(s)	162, 803, 1187, 1954, 2179, 2226, 3199
BspANI	GGCC	5 cut(s)	332, 461, 595, 1004, 2882
BspCNI	CTCAG	8 cut(s)	315, 883, 928, 1351, 1390, 1507, 2124, 2687
BspDI	ATCGAT	2 cut(s)	2513, 2541
BspHI	TCATGA	1 cut(s)	1297
BspLI	GGNNCC	5 cut(s)	1438, 1528, 2496, 2521, 3237
BspMAI	CTGCAG	2 cut(s)	1675, 2128
BspMI	ACCTGC	1 cut(s)	950
BspPI	GGATC	3 cut(s)	736, 1521, 1534
BspQI	GCTCTTC	1 cut(s)	1139
BspT104I	TTCGAA	2 cut(s)	609, 1344
BspT107I	GGYRCC	1 cut(s)	2519
BspTNI	GGTCTC	1 cut(s)	2677
BsrBI	CCGCTC	1 cut(s)	2226
BsrDI	GCAATG	6 cut(s)	385, 414, 886, 1141, 1953, 2523
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	7 cut(s)	16, 208, 313, 483, 1231, 2138, 2783
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	8 cut(s)	948, 1336, 1610, 1837, 2716, 2863, 3231, 3291
BssMI	GATC	2 cut(s)	728, 1526
BssNAI	GTATAC	1 cut(s)	404
BssSI	CACGAG	1 cut(s)	3003
BssT1I	CCWWGG	5 cut(s)	948, 1610, 1837, 2716, 3231
Bst1107I	GTATAC	1 cut(s)	404
Bst2BI	CACGAG	1 cut(s)	3003
Bst2UI	CCWGG	4 cut(s)	77, 1338, 2865, 3293
Bst6I	CTCTTC	3 cut(s)	578, 1139, 1569
BstAPI	GCANNNNNTGC	2 cut(s)	1937, 2990
BstBI	TTCGAA	2 cut(s)	609, 1344
BstC8I	GCNNGC	7 cut(s)	334, 349, 353, 2077, 2535, 2648, 2850
BstDSI	CCRYGG	2 cut(s)	1837, 2716
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	2 cut(s)	731, 1529
BstMAI	GTCTC	4 cut(s)	913, 2114, 2225, 2677
BstMBI	GATC	2 cut(s)	728, 1526
BstMWI	GCNNNNNNNGC	9 cut(s)	220, 342, 1010, 1937, 2534, 2582, 2990, 2999, 3140
BstNI	CCWGG	4 cut(s)	77, 1338, 2865, 3293
BstNSI	RCATGY	3 cut(s)	2079, 2261, 2650
BstSCI	CCNGG	5 cut(s)	75, 1336, 2863, 2882, 3291
BstSFI	CTRYAG	4 cut(s)	1671, 1941, 2124, 2211
BstSLI	GKGCMC	1 cut(s)	2938
BstV1I	GCAGC	6 cut(s)	190, 997, 2585, 2864, 3115, 3118
BstV2I	GAAGAC	5 cut(s)	944, 1386, 1455, 1658, 3113
BstX2I	RGATCY	2 cut(s)	728, 1526
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstYI	RGATCY	2 cut(s)	728, 1526
BstZ17I	GTATAC	1 cut(s)	404
Bsu15I	ATCGAT	2 cut(s)	2513, 2541
Bsu36I	CCTNAGG	1 cut(s)	2754
BsuI	GTATCC	2 cut(s)	640, 1239
BsuRI	GGCC	5 cut(s)	332, 461, 595, 1004, 2882
BsuTUI	ATCGAT	2 cut(s)	2513, 2541
BtgI	CCRYGG	2 cut(s)	1837, 2716
BtrI	CACGTC	1 cut(s)	667
BtsI	GCAGTG	1 cut(s)	2121
BtsIMutI	CAGTG	8 cut(s)	471, 536, 650, 692, 1188, 1593, 2121, 2145
BveI	ACCTGC	1 cut(s)	950
Cac8I	GCNNGC	7 cut(s)	334, 349, 353, 2077, 2535, 2648, 2850
CaiI	CAGNNNCTG	2 cut(s)	538, 3040
CciI	TCATGA	1 cut(s)	1297
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	8 cut(s)	164, 593, 963, 1436, 1810, 2495, 2881, 2886
ClaI	ATCGAT	2 cut(s)	2513, 2541
CpoI	CGGWCCG	1 cut(s)	164
CseI	GACGC	1 cut(s)	2768
Csp6I	GTAC	3 cut(s)	73, 277, 1459
CspAI	ACCGGT	1 cut(s)	46
CspI	CGGWCCG	1 cut(s)	164
CviQI	GTAC	3 cut(s)	73, 277, 1459
DpnI	GATC	2 cut(s)	730, 1528
DpnII	GATC	2 cut(s)	728, 1526
DrdI	GACNNNNNNGTC	1 cut(s)	1598
DseDI	GACNNNNNNGTC	1 cut(s)	1598
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	3 cut(s)	578, 1139, 1569
EarI	CTCTTC	3 cut(s)	578, 1139, 1569
EciI	GGCGGA	1 cut(s)	1202
Ecl136II	GAGCTC	1 cut(s)	3002
Eco130I	CCWWGG	5 cut(s)	948, 1610, 1837, 2716, 3231
Eco24I	GRGCYC	2 cut(s)	2457, 3004
Eco31I	GGTCTC	1 cut(s)	2677
Eco32I	GATATC	1 cut(s)	638
Eco47I	GGWCC	6 cut(s)	164, 963, 1436, 1810, 2495, 2886
Eco53kI	GAGCTC	1 cut(s)	3002
Eco57I	CTGAAG	1 cut(s)	816
Eco81I	CCTNAGG	1 cut(s)	2754
Eco88I	CYCGRG	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	3002
EcoO109I	RGGNCCY	2 cut(s)	1436, 2495
EcoRI	GAATTC	2 cut(s)	361, 1579
EcoRII	CCWGG	4 cut(s)	75, 1336, 2863, 3291
EcoRV	GATATC	1 cut(s)	638
EcoT14I	CCWWGG	5 cut(s)	948, 1610, 1837, 2716, 3231
EcoT22I	ATGCAT	1 cut(s)	2648
EcoT38I	GRGCYC	2 cut(s)	2457, 3004
ErhI	CCWWGG	5 cut(s)	948, 1610, 1837, 2716, 3231
Esp3I	CGTCTC	1 cut(s)	2114
FaqI	GGGAC	5 cut(s)	79, 1317, 1422, 2508, 3273
FauNDI	CATATG	1 cut(s)	1933
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	8 cut(s)	13, 179, 1011, 2227, 2574, 2853, 3129, 3132
FriOI	GRGCYC	2 cut(s)	2457, 3004
Fsp4HI	GCNGC	8 cut(s)	13, 179, 1011, 2227, 2574, 2853, 3129, 3132
FspBI	CTAG	6 cut(s)	399, 423, 2265, 2409, 2586, 2658
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	8 cut(s)	13, 179, 1011, 2227, 2574, 2853, 3129, 3132
GsaI	CCCAGC	3 cut(s)	989, 2959, 3037
GsuI	CTGGAG	2 cut(s)	1038, 2121
HaeIII	GGCC	5 cut(s)	332, 461, 595, 1004, 2882
HapII	CCGG	3 cut(s)	47, 1005, 2884
HgaI	GACGC	1 cut(s)	2768
HhaI	GCGC	1 cut(s)	347
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	2 cut(s)	2686, 3028
HindII	GTYRAC	2 cut(s)	2686, 3028
HindIII	AAGCTT	1 cut(s)	3182
HpaI	GTTAAC	2 cut(s)	2686, 3028
HpaII	CCGG	3 cut(s)	47, 1005, 2884
HphI	GGTGA	6 cut(s)	733, 989, 1277, 1824, 1866, 3118
Hpy166II	GTNNAC	8 cut(s)	404, 683, 1553, 1810, 2318, 2686, 2889, 3028
Hpy188III	TCNNGA	8 cut(s)	431, 644, 670, 1055, 1243, 1298, 2199, 2821
Hpy8I	GTNNAC	8 cut(s)	404, 683, 1553, 1810, 2318, 2686, 2889, 3028
HpyCH4IV	ACGT	2 cut(s)	666, 3190
HpyF10VI	GCNNNNNNNGC	9 cut(s)	220, 342, 1010, 1937, 2534, 2582, 2990, 2999, 3140
HpySE526I	ACGT	2 cut(s)	666, 3190
HspAI	GCGC	1 cut(s)	345
KspAI	GTTAAC	2 cut(s)	2686, 3028
Kzo9I	GATC	2 cut(s)	728, 1526
LguI	GCTCTTC	1 cut(s)	1139
LmnI	GCTCC	6 cut(s)	950, 1007, 1928, 3140, 3201, 3235
Lsp1109I	GCAGC	6 cut(s)	190, 997, 2585, 2864, 3115, 3118
MaeI	CTAG	6 cut(s)	399, 423, 2265, 2409, 2586, 2658
MaeII	ACGT	2 cut(s)	666, 3190
MaeIII	GTNAC	9 cut(s)	86, 301, 534, 898, 1265, 1282, 2119, 2206, 2973
MalI	GATC	2 cut(s)	730, 1528
MbiI	CCGCTC	1 cut(s)	2226
MboI	GATC	2 cut(s)	728, 1526
MfeI	CAATTG	2 cut(s)	2798, 3240
MflI	RGATCY	2 cut(s)	728, 1526
MhlI	GDGCHC	3 cut(s)	2457, 2938, 3004
MlsI	TGGCCA	1 cut(s)	332
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	334, 560
MmeI	TCCRAC	5 cut(s)	1063, 1504, 1915, 2169, 3253
Mox20I	TGGCCA	1 cut(s)	332
Mph1103I	ATGCAT	1 cut(s)	2648
MroXI	GAANNNNTTC	5 cut(s)	278, 1680, 1914, 1994, 3282
MscI	TGGCCA	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	630
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	3199
MspI	CCGG	3 cut(s)	47, 1005, 2884
MspR9I	CCNGG	5 cut(s)	77, 1338, 2865, 2884, 3293
MunI	CAATTG	2 cut(s)	2798, 3240
Mva1269I	GAATGC	4 cut(s)	1089, 1134, 1168, 2410
MvaI	CCWGG	4 cut(s)	77, 1338, 2865, 3293
MwoI	GCNNNNNNNGC	9 cut(s)	220, 342, 1010, 1937, 2534, 2582, 2990, 2999, 3140
NciI	CCSGG	1 cut(s)	2884
NcoI	CCATGG	2 cut(s)	1837, 2716
NdeI	CATATG	1 cut(s)	1933
NdeII	GATC	2 cut(s)	728, 1526
NlaIV	GGNNCC	5 cut(s)	1438, 1528, 2496, 2521, 3237
NmuCI	GTSAC	5 cut(s)	534, 1265, 1282, 2119, 2973
NsiI	ATGCAT	1 cut(s)	2648
NspI	RCATGY	3 cut(s)	2079, 2261, 2650
NspV	TTCGAA	2 cut(s)	609, 1344
PaeI	GCATGC	2 cut(s)	2079, 2650
PagI	TCATGA	1 cut(s)	1297
PciI	ACATGT	1 cut(s)	2257
PciSI	GCTCTTC	1 cut(s)	1139
PctI	GAATGC	4 cut(s)	1089, 1134, 1168, 2410
PdmI	GAANNNNTTC	5 cut(s)	278, 1680, 1914, 1994, 3282
PflMI	CCANNNNNTGG	1 cut(s)	2789
PinAI	ACCGGT	1 cut(s)	46
PkrI	GCNGC	8 cut(s)	14, 180, 1012, 2228, 2575, 2854, 3130, 3133
PleI	GAGTC	2 cut(s)	333, 559
PpsI	GAGTC	2 cut(s)	333, 559
PpuMI	RGGWCCY	2 cut(s)	1436, 2495
PscI	ACATGT	1 cut(s)	2257
PshBI	ATTAAT	2 cut(s)	254, 2949
Psp124BI	GAGCTC	1 cut(s)	3004
Psp5II	RGGWCCY	2 cut(s)	1436, 2495
Psp6I	CCWGG	4 cut(s)	75, 1336, 2863, 3291
PspFI	CCCAGC	3 cut(s)	985, 2955, 3033
PspGI	CCWGG	4 cut(s)	75, 1336, 2863, 3291
PspN4I	GGNNCC	5 cut(s)	1438, 1528, 2496, 2521, 3237
PspPI	GGNCC	8 cut(s)	164, 593, 963, 1436, 1810, 2495, 2881, 2886
PspPPI	RGGWCCY	2 cut(s)	1436, 2495
PstI	CTGCAG	2 cut(s)	1675, 2128
PstNI	CAGNNNCTG	2 cut(s)	538, 3040
PsuI	RGATCY	2 cut(s)	728, 1526
RsaI	GTAC	3 cut(s)	74, 278, 1460
RsaNI	GTAC	3 cut(s)	73, 277, 1459
RseI	CAYNNNNRTG	1 cut(s)	630
Rsr2I	CGGWCCG	1 cut(s)	164
RsrII	CGGWCCG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	3004
SapI	GCTCTTC	1 cut(s)	1139
SatI	GCNGC	8 cut(s)	13, 179, 1011, 2227, 2574, 2853, 3129, 3132
Sau3AI	GATC	2 cut(s)	728, 1526
Sau96I	GGNCC	8 cut(s)	164, 593, 963, 1436, 1810, 2495, 2881, 2886
ScaI	AGTACT	1 cut(s)	278
SchI	GAGTC	2 cut(s)	334, 560
ScrFI	CCNGG	5 cut(s)	77, 1338, 2865, 2884, 3293
SduI	GDGCHC	3 cut(s)	2457, 2938, 3004
SfcI	CTRYAG	4 cut(s)	1671, 1941, 2124, 2211
SfuI	TTCGAA	2 cut(s)	609, 1344
SinI	GGWCC	6 cut(s)	164, 963, 1436, 1810, 2495, 2886
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	2 cut(s)	340, 2843
SmoI	CTYRAG	2 cut(s)	340, 2843
SpeI	ACTAGT	1 cut(s)	422
SphI	GCATGC	2 cut(s)	2079, 2650
SsiI	CCGC	7 cut(s)	162, 803, 1187, 1954, 2179, 2226, 3199
SspI	AATATT	1 cut(s)	1193
SspMI	CTAG	6 cut(s)	399, 423, 2265, 2409, 2586, 2658
SstI	GAGCTC	1 cut(s)	3004
StyD4I	CCNGG	5 cut(s)	75, 1336, 2863, 2882, 3291
StyI	CCWWGG	5 cut(s)	948, 1610, 1837, 2716, 3231
TaiI	ACGT	2 cut(s)	669, 3193
TaqI	TCGA	7 cut(s)	20, 32, 609, 1344, 1744, 2513, 2541
TatI	WGTACW	2 cut(s)	276, 1458
TauI	GCSGC	1 cut(s)	2229
TscAI	CASTG	8 cut(s)	478, 543, 657, 699, 1188, 1600, 2128, 2145
TseFI	GTSAC	5 cut(s)	534, 1265, 1282, 2119, 2973
TseI	GCWGC	7 cut(s)	12, 178, 1010, 2573, 2852, 3128, 3131
Tsp45I	GTSAC	5 cut(s)	534, 1265, 1282, 2119, 2973
TspGWI	ACGGA	4 cut(s)	156, 846, 1224, 3153
TspRI	CASTG	8 cut(s)	478, 543, 657, 699, 1188, 1600, 2128, 2145
Van91I	CCANNNNNTGG	1 cut(s)	2789
VpaK11BI	GGWCC	6 cut(s)	164, 963, 1436, 1810, 2495, 2886
VspI	ATTAAT	2 cut(s)	254, 2949
XapI	RAATTY	7 cut(s)	361, 616, 746, 834, 1303, 1579, 1886
XceI	RCATGY	3 cut(s)	2079, 2261, 2650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2723
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	5 cut(s)	278, 1680, 1914, 1994, 3282
XspI	CTAG	6 cut(s)	399, 423, 2265, 2409, 2586, 2658
ZrmI	AGTACT	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	2648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.