Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002113

Physical Location & Seq

Genomic Coordinates Reverse (-)

13865995 .. 13867479

Gene Structure 1485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0170800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGTCATCGTCAACTATAAAGATCAGGAGCATCGGACCCAACCCGTAGTATGTCATGGGACAGATCCAGAGTGGAATGAGCAACTTCTTTTCACCATAGCTGATTCAGTTGAAGATGTCAGGCTTCGGGTCCATGACGGGGATTACGTTACTGATGAAGAAGTTGGACATTCCTCTATTCCATTAAACACCCTACTTGAGTCGGGGTACGAAGCGCAAATCGAGGCCCATCCATATGATGTATCCAGGGGAGGTGACACCTATGGAGAAATTATCGTTGCCCTCCATTTTCATCCAGAGCCCGGCCATGATAAAGATCAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009909 GO:0009987 GO:0010228 GO:0010452 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0051568 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

108

Amino Acids

12.24

Weight (kDa)

4.47

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	2 - 69	3.9e-09	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400
fragaria_vesca	FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810
malus_domestica	MD02G1278400.v1.1 MD07G1046400.v1.1 MD07G1046500.v1.1
prunus_persica	Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1
pyrus_communis	pycom02g23860
rosa_chinensis	RchiOBHm_Chr7g0217731
rosa_laevigata	RLG00000002444
rosa_multiflora	Rmu_co8471317.1_g000001 Rmu_sc0000202.1_g000011
rosa_roxburghii	Rroxscaffold_3G00241740
rosa_rugosa	Rorug07G0170800 Rorug07G0170800
rosa_samantha	Rh7AG311300 Rh7BG303200 Rh7CG330300 Rh7DG311100
rosa_wichuraiana	Rw7G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	304
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	139, 302
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	245
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	2 cut(s)	225, 304
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	3 cut(s)	36, 130, 226
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	2 cut(s)	85, 266
AvaII	GGWCC	2 cut(s)	36, 130
BanII	GRGCYC	1 cut(s)	303
BccI	CCATC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	247
BciVI	GTATCC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	303
BfuI	GTATCC	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	247, 303
Bme18I	GGWCC	2 cut(s)	36, 130
BmgT120I	GGNCC	3 cut(s)	36, 130, 226
BmiI	GGNNCC	2 cut(s)	38, 131
BmrFI	CCNGG	2 cut(s)	247, 303
BmsI	GCATC	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 302
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	229, 292
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	139, 302
BshFI	GGCC	2 cut(s)	227, 306
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	139, 302
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	227, 306
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	22, 64, 316
BspANI	GGCC	2 cut(s)	227, 306
BspLI	GGNNCC	2 cut(s)	38, 131
BspPI	GGATC	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	3 cut(s)	22, 64, 316
Bst2UI	CCWGG	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	229, 292
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	3 cut(s)	25, 67, 319
BstMBI	GATC	3 cut(s)	22, 64, 316
BstNI	CCWGG	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	245, 301
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	227, 306
BtsCI	GGATG	2 cut(s)	229, 292
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	3 cut(s)	36, 130, 226
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	56, 134, 308
CviJI	RGCY	5 cut(s)	101, 124, 227, 301, 306
CviKI_1	RGCY	5 cut(s)	101, 124, 227, 301, 306
CviQI	GTAC	1 cut(s)	208
DpnI	GATC	3 cut(s)	24, 66, 318
DpnII	GATC	3 cut(s)	22, 64, 316
EaeI	YGGCCR	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	36, 130
EcoRII	CCWGG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	3 cut(s)	59, 137, 311
FaiI	YATR	9 cut(s)	18, 52, 57, 98, 135, 235, 237, 264, 309
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	3 cut(s)	55, 133, 307
FauNDI	CATATG	1 cut(s)	235
FokI	GGATG	2 cut(s)	216, 279
FriOI	GRGCYC	1 cut(s)	303
GlaI	GCGC	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	227, 306
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	3 cut(s)	59, 137, 311
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	104, 200
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	2 cut(s)	85, 266
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	4 cut(s)	26, 68, 296, 320
Hpy8I	GTNNAC	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	59, 137, 311
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	3 cut(s)	22, 64, 316
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	7 cut(s)	11, 81, 106, 232, 259, 309, 316
LweI	GCATC	1 cut(s)	40
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	148, 254
MalI	GATC	3 cut(s)	24, 66, 318
MboI	GATC	3 cut(s)	22, 64, 316
MboII	GAAGA	2 cut(s)	125, 170
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	4 cut(s)	184, 217, 245, 293
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	234
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	2 cut(s)	247, 303
MvaI	CCWGG	1 cut(s)	247
NciI	CCSGG	1 cut(s)	303
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	3 cut(s)	22, 64, 316
NlaIII	CATG	3 cut(s)	59, 137, 311
NlaIV	GGNNCC	2 cut(s)	38, 131
NmuCI	GTSAC	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	104
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	2 cut(s)	38, 131
PspPI	GGNCC	3 cut(s)	36, 130, 226
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	185
Sau3AI	GATC	3 cut(s)	22, 64, 316
Sau96I	GGNCC	3 cut(s)	36, 130, 226
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	247, 303
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	4 cut(s)	103, 150, 256, 263
SfaNI	GCATC	1 cut(s)	40
SinI	GGWCC	2 cut(s)	36, 130
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	270
StyD4I	CCNGG	2 cut(s)	245, 301
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	171, 281
VpaK11BI	GGWCC	2 cut(s)	36, 130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.