Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002113

Physical Location & Seq

Genomic Coordinates Reverse (-)

36364591 .. 36376750

Gene Structure 12160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG330300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3582 bp

ATGGAGATGAGCTGCCAGTCAAATGGCAATTCTAGTGATATTCAACAGCTCTGTAACTCTGGGTACCAGGACAAGACTTACTCGGGCTATATGCCTCCTCCTCCTCCTCCTTTTGTGAGCGGATGGATGTATGTTAATGAACAAGGACAAATGTGCGGCCCGTATATTCAGCAGCAGTTATTTGAAGGTTTATCTACTGGTTTTTTGCCAGATGAGCTTCCTGTATATCCTGTGGTAAATGGGGCATTAATAAACCCAATACCATTGAAGTATTTCAAGCAGTTCCCTGATCATGTTGCTACTGGGTTTGCATATCTGAGTCTGGGCAGCATCTCGAGCACAAGCACGCCTACAAATTCTCTTAAATCTTGCAATGGGGATTTGGCTACATGTAGTATACCTACACCGGTTGCTACCGGTTATCCTGATTTACAGTATGACTCCACTTCACAGGCCAGCTACGACACTAGTGTTTCCAATAAGCTGATATTGAACTCCAAAGCACCTAATCAAGTTACTTCAAATCAGTCACTGTCAAGTAAAGATTCTTGCTGGTTGTATGAGGATGAGGAAGGGAAGAGAAATGGGCCATATTCTCTTTTCGAATTAAATTCTTGGCATCGATATGGATATCTTCGGGATTCACTGACGATTTATCATGTCAAGAACAAGTGTAAACCTTTCACGCTGTCATCGGTTCTCAATTCATGGAAACTTGATGGACCTGAAACCATCACCAAATTTGATGCCAAATGTAATGAGTCTGGCCCATTGGTAAGCATTATATCTGAAGTCACAGAGGGAGTTTCTTCCCAACTGCACTATGGAATTATGAAATCAGCTCGTAGAGTTGTTTTAGATGAGATAATCAGTAATGTGATTGCTGAGTTTGTTACCACCACGAAAGCTCAGAGACTTAACCAGGATATGAAGACCTGGTCCTTGGATGCAAAAAAGTCTGAAATTGACTGTGAGGCTGGAGTTTCCGACTATGTTGCTGAAAGGACATGTATCAATCAAGATTTGCCTTCACCAATGACTAAATCTGTTGGAAGCATTCAGAACTTTTGGGATTCTTATGCAGTTGTTTGTAGAATGCTCTTTGATTATTGCATGGAAGTCACGTGGAATGCTGTCTTCTATGATTCAGTGGCAGAATATTCATCTGCTTGGAGGAGAAGGAAACTATGGACTGGCTCTCCATTGTTGTGGAGACCTCCTAAAAGATGTGGTGACTGGGTGGAAAAGATCACAAAATTACCTCATGAAATTTTATCTGATAATGATGATGATCGTCCCCCTGGTTTTGAACTGTTGGGAGCTGAGTTAGGGCGTCATGCTCAGCCATCATTGAGCTCTTCATTGGTTCTAATGGAGGAAAAACCACCTAAACAGATAGGTCCCTCATACGAAGACATGAAGTACATTGTAGAGCATATAGAAAATGAACTTCAATTGTCTGCAAAGAGTTCCTTGACCGAGTATGTTGGATGCTTTGTTGATGAGGAAGTGAGTAAACTAGTTAATTCGTCCACAGAAGAGAATTCAATAAAGGAGAATATTGACTGTTCCCCGAGGAGCATTGGTGGCTCATCTGACCCATGTGACAATTTGAGGACTTCAAATAACACATCTGCAGAAATTATTCTGTCTGAGATATCCCCAACTCCAGAAGTAGAAAAACCCTTCCATAGTTCTTTTTCTGAAAATCATATGTCTAATTTTCTGGCAAGTGCTTTTAAGGAAGTCTGTTATCATGTTGATGATCTTGATGGTGACCAAGAAGTAAATGAACCATCACCCCCTGGACTCATAGCCAATGTTAAAACTCTTGGACAGTCACCTATTTGCAAATTCCGACCTTCAAGGTCAGAAGAATGTATTCCTAAGATTGGAGCATATGTTGCTACAGCAATGTTGCGGAAGAAACTCCATGATGATGTTATTGGAGAATGGAAATCATCATTTATTGATCTGGCTCTTAATAAGTTTCTTGCATCATGGCGAACTTCAAGGAAGAACCATGTCCGTAATGAGGAAAAAGCATGCAACACCAATAAAGAAGAATTAAAGCATTGTCACAGTTCTATCACTGCAGAAGTATCTCCAGTGATCGATGAATATAAATATCAGCGCAAGAGGTTGCGGAAAAAGTCAGGTTCTTCTGGACTTGTAACTGTAATTGATACTGGGTTAAAGAGTGAAACAGTGGAAAAGGCAAAGAAGCTACACGTTGCTAGAAATGTGCCGAAGAATGCTACTGTGATTCCTAGAAACAGATGTCTAAGCAAACCCCAAACTGAATCATCTGTTGATGCCATATCTGGGAAAGTTAATTCTAAAAGGCTTTCATCAACTGATAAGTCAGCAGCTAAGAATGCTAGTAGTCGGAAGCCATTGAAGGGTTCTCATGAACAAAGTTGTAAGCCCATTGACGATGTTATTGATGGCATCAGCTCAGTTAGGGGATCCCAAACTGAATTATCTGTTGGTGCCATTGCCTTGCAAGCCATTGATAAGAGGTGTTCATCCACTGATACATTAGTAGCTAATAATGCTATTAGTCGGAAACGATTGAAGGTTTCTCATGCAGTTAAAGGTAGTGAACCCATGGAGTGCACTCCTAAACCTAGTAAAGGGATGGTTTCAGCTCATGTCCAGGATGACAATGATATTGAGAATGTTGTAAATAGCCATGGTCGAGATGATCGGCTTAAAGGAGAGCCTTTAACTAAGGTGTCGAAGCTGAAAAGGGAGCGTCCAGTTGGCGGTTCACAATTGCCACATCCCAAAAAGGTCTTGAAAGTAGCCAATGATGTTCTCAAGCAAGCAGCAAATATCCCAGTCGCAGTAAGAAAGGCCCGGTCCAGTAAGTCAAAGACGTCAAATCCTTGCCCTAAATCTGATGGATGTGCCCGTGCTTCAATTAATGGCTGGGAATGGCATAGATGGTCACTAAATGCAACTCCTGCTGAAAGAGCTCGTGGTAGGGGAATCAAATATGTTAATGCCCAGTACCGGACTTCTGACACTAATACATCACAGTGGTCAAATGGCAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAGATGCGCAGTCTTCTTGCTGCTGCTGAGGGTGCTGACCTTTTGAAAGCCACTCAATTAAAGGCAAGGAAAAAGCGTCTACGTTTCCAGCGGAGCAAGATACATGATTGGGGTCTTATTGCCTTGGAGCCAATCGAGGCAGAAGACTTTGTTATTGAATATGTTGGAGAATTGATTCGTCCCCAGATATCTGATATACGCGAGCGTCATTACGAGAAGATGGGAATTGGCAGCAGTTATTTGTTTAGGATTGATGATGGTTATGTGGTTGATGCTACAAAACGTGGAGGAATTGCTAGATTCATAAACCATTCTTGTGAGCCTAACTGCTACACCAAGGTTATAAGTGTTGAGGGTGAGAAAAAGATTTTCATTTATGCAAAACGACATATAGCTGCTGGTGAAGAAATTACTTACAATTATAAGTTCCCATTAGAGGAGAAAAAGATTCCATGCAATTGTGGTTCGAAAAGGTGCCGTGGATCATTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009909 GO:0009987 GO:0010228 GO:0010452 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0051568 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

1193

Amino Acids

132.75

Weight (kDa)

8.66

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GYF	PF02213	185 - 223	7.4e-06	GYF domain
SET	PF00856	1066 - 1171	1.2e-27	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400
fragaria_vesca	FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810
malus_domestica	MD02G1278400.v1.1 MD07G1046400.v1.1 MD07G1046500.v1.1
prunus_persica	Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1
pyrus_communis	pycom02g23860
rosa_chinensis	RchiOBHm_Chr7g0217731
rosa_laevigata	RLG00000002444
rosa_multiflora	Rmu_co8471317.1_g000001 Rmu_sc0000202.1_g000011
rosa_roxburghii	Rroxscaffold_3G00241740
rosa_rugosa	Rorug07G0170800 Rorug07G0170800
rosa_samantha	Rh7AG311300 Rh7BG303200 Rh7CG330300 Rh7DG311100
rosa_wichuraiana	Rw7G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	3431, 3510
AatII	GACGTC	1 cut(s)	2885
Acc16I	TGCGCA	1 cut(s)	3095
Acc65I	GGTACC	1 cut(s)	63
AccB1I	GGYRCC	3 cut(s)	63, 2492, 3561
AccBSI	CCGCTC	1 cut(s)	120
AccI	GTMKAC	2 cut(s)	397, 3166
AccII	CGCG	1 cut(s)	3288
AciI	CCGC	6 cut(s)	120, 156, 1921, 2146, 2769, 3178
AclWI	GGATC	3 cut(s)	2463, 2476, 3577
AcsI	RAATTY	6 cut(s)	355, 610, 740, 1269, 1543, 1853
AcuI	CTGAAG	1 cut(s)	810
AcvI	CACGTG	1 cut(s)	1125
AcyI	GRCGYC	2 cut(s)	1333, 2882
AfaI	GTAC	3 cut(s)	65, 1424, 3017
AfiI	CCNNNNNNNGG	8 cut(s)	1892, 2035, 2325, 2402, 2636, 2768, 3018, 3523
AflIII	ACRYGT	3 cut(s)	389, 1007, 2230
AgeI	ACCGGT	2 cut(s)	406, 416
AhlI	ACTAGT	2 cut(s)	467, 1519
AjnI	CCWGG	6 cut(s)	66, 921, 935, 1300, 1804, 2658
AjuI	GAANNNNNNNTTGG	2 cut(s)	2472, 2504
Alw21I	GWGCWC	4 cut(s)	341, 1358, 2621, 2983
Alw26I	GTCTC	2 cut(s)	907, 1207
Alw44I	GTGCAC	1 cut(s)	2617
AlwI	GGATC	3 cut(s)	2463, 2476, 3577
AlwNI	CAGNNNCTG	1 cut(s)	532
Ama87I	CYCGRG	3 cut(s)	82, 334, 1573
AoxI	GGCC	5 cut(s)	157, 453, 587, 766, 2859
ApaLI	GTGCAC	1 cut(s)	2617
ApeKI	GCWGC	9 cut(s)	12, 172, 327, 2369, 2831, 3107, 3110, 3318, 3482
ApoI	RAATTY	6 cut(s)	355, 610, 740, 1269, 1543, 1853
AseI	ATTAAT	2 cut(s)	248, 2928
AsiGI	ACCGGT	2 cut(s)	406, 416
Asp700I	GAANNNNTTC	4 cut(s)	272, 1644, 1881, 3261
Asp718I	GGTACC	1 cut(s)	63
AspLEI	GCGC	2 cut(s)	2136, 3096
AspS9I	GGNCC	8 cut(s)	158, 587, 722, 767, 939, 1400, 2860, 2865
AsuC2I	CCSGG	1 cut(s)	2863
AsuHPI	GGTGA	9 cut(s)	727, 1023, 1244, 1787, 1791, 1833, 3097, 3455, 3500
AsuII	TTCGAA	2 cut(s)	603, 3554
AvaI	CYCGRG	3 cut(s)	82, 334, 1573
AvaII	GGWCC	4 cut(s)	722, 939, 1400, 2865
BaeGI	GKGCMC	2 cut(s)	2621, 2917
BaeI	ACNNNNGTAYC	2 cut(s)	2529, 2562
BamHI	GGATCC	1 cut(s)	2468
BanI	GGYRCC	3 cut(s)	63, 2492, 3561
BanII	GRGCYC	2 cut(s)	1358, 2983
BauI	CACGAG	1 cut(s)	2982
BbrPI	CACGTG	1 cut(s)	1125
BbsI	GAAGAC	5 cut(s)	938, 1129, 1419, 3092, 3237
Bbv12I	GWGCWC	4 cut(s)	341, 1358, 2621, 2983
BbvCI	CCTCAGC	1 cut(s)	3114
BbvI	GCAGC	8 cut(s)	184, 339, 2381, 2843, 3094, 3097, 3330, 3469
BceAI	ACGGC	1 cut(s)	3549
BcgI	CGANNNNNNTGC	2 cut(s)	977, 1011
BciT130I	CCWGG	6 cut(s)	68, 923, 937, 1302, 1806, 2660
BclI	TGATCA	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	2863
BcoDI	GTCTC	2 cut(s)	907, 1207
BcuI	ACTAGT	2 cut(s)	467, 1519
BfaI	CTAG	8 cut(s)	33, 468, 1520, 2238, 2271, 2382, 2631, 3384
BfmI	CTRYAG	3 cut(s)	1635, 1908, 2094
BlpI	GCTNAGC	1 cut(s)	1341
Bme1390I	CCNGG	7 cut(s)	68, 923, 937, 1302, 1806, 2660, 2863
Bme18I	GGWCC	4 cut(s)	722, 939, 1400, 2865
BmeT110I	CYCGRG	3 cut(s)	82, 334, 1573
BmgT120I	GGNCC	8 cut(s)	158, 587, 722, 767, 939, 1400, 2860, 2865
BmiI	GGNNCC	6 cut(s)	65, 1402, 2470, 2494, 3216, 3563
BmrFI	CCNGG	7 cut(s)	68, 923, 937, 1302, 1806, 2660, 2863
BmrI	ACTGGG	5 cut(s)	312, 1246, 2199, 2837, 3007
BmuI	ACTGGG	5 cut(s)	312, 1246, 2199, 2837, 3007
BpiI	GAAGAC	5 cut(s)	938, 1129, 1419, 3092, 3237
BpmI	CTGGAG	3 cut(s)	999, 1653, 2091
Bpu10I	CCTNAGC	1 cut(s)	3114
Bpu1102I	GCTNAGC	1 cut(s)	1341
Bpu14I	TTCGAA	2 cut(s)	603, 3554
BpuEI	CTTGAG	1 cut(s)	2807
BpuMI	CCSGG	1 cut(s)	2863
Bsa29I	ATCGAT	2 cut(s)	622, 2115
BsaAI	YACGTR	1 cut(s)	1125
BsaBI	GATNNNNATC	1 cut(s)	1290
BsaHI	GRCGYC	2 cut(s)	1333, 2882
BsaI	GGTCTC	1 cut(s)	1207
BsaJI	CCNNGG	9 cut(s)	942, 1300, 1574, 1804, 2610, 2695, 3210, 3423, 3565
BsaWI	WCCGGW	3 cut(s)	406, 416, 3018
BsaXI	ACNNNNNCTCC	6 cut(s)	1183, 1213, 1570, 1600, 1887, 1917
Bsc4I	CCNNNNNNNGG	8 cut(s)	1892, 2035, 2325, 2402, 2636, 2768, 3018, 3523
Bse118I	RCCGGY	2 cut(s)	406, 416
Bse3DI	GCAATG	3 cut(s)	379, 1920, 2496
Bse8I	GATNNNNATC	1 cut(s)	1290
BseBI	CCWGG	6 cut(s)	68, 923, 937, 1302, 1806, 2660
BseCI	ATCGAT	2 cut(s)	622, 2115
BseDI	CCNNGG	9 cut(s)	942, 1300, 1574, 1804, 2610, 2695, 3210, 3423, 3565
BseJI	GATNNNNATC	1 cut(s)	1290
BseLI	CCNNNNNNNGG	8 cut(s)	1892, 2035, 2325, 2402, 2636, 2768, 3018, 3523
BseMI	GCAATG	3 cut(s)	379, 1920, 2496
BseMII	CTCAG	8 cut(s)	308, 876, 923, 1314, 1355, 1644, 2472, 3105
BseRI	GAGGAG	7 cut(s)	87, 90, 93, 96, 1189, 1591, 3539
BseSI	GKGCMC	2 cut(s)	2621, 2917
BseXI	GCAGC	8 cut(s)	184, 339, 2381, 2843, 3094, 3097, 3330, 3469
BseYI	CCCAGC	1 cut(s)	2934
BsgI	GTGCAG	1 cut(s)	803
Bsh1236I	CGCG	1 cut(s)	3288
BshFI	GGCC	5 cut(s)	159, 455, 589, 768, 2861
BshNI	GGYRCC	3 cut(s)	63, 2492, 3561
BshTI	ACCGGT	2 cut(s)	406, 416
BshVI	ATCGAT	2 cut(s)	622, 2115
BsiHKAI	GWGCWC	4 cut(s)	341, 1358, 2621, 2983
BsiHKCI	CYCGRG	3 cut(s)	82, 334, 1573
BsiSI	CCGG	4 cut(s)	407, 417, 2863, 3019
BslFI	GGGAC	3 cut(s)	1281, 1386, 3252
BslI	CCNNNNNNNGG	8 cut(s)	1892, 2035, 2325, 2402, 2636, 2768, 3018, 3523
BsmAI	GTCTC	2 cut(s)	907, 1207
BsmFI	GGGAC	3 cut(s)	1281, 1386, 3252
BsmI	GAATGC	5 cut(s)	1056, 1101, 1135, 2260, 2383
BsnI	GGCC	5 cut(s)	159, 455, 589, 768, 2861
Bso31I	GGTCTC	1 cut(s)	1207
BsoBI	CYCGRG	3 cut(s)	82, 334, 1573
Bsp119I	TTCGAA	2 cut(s)	603, 3554
Bsp1286I	GDGCHC	5 cut(s)	341, 1358, 2621, 2917, 2983
Bsp143I	GATC	9 cut(s)	289, 1248, 1291, 1765, 1972, 2112, 2468, 2707, 3569
Bsp1720I	GCTNAGC	1 cut(s)	1341
Bsp19I	CCATGG	2 cut(s)	2610, 2695
BspACI	CCGC	6 cut(s)	120, 156, 1921, 2146, 2769, 3178
BspANI	GGCC	5 cut(s)	159, 455, 589, 768, 2861
BspCNI	CTCAG	8 cut(s)	309, 877, 922, 1315, 1354, 1645, 2471, 3106
BspDI	ATCGAT	2 cut(s)	622, 2115
BspFNI	CGCG	1 cut(s)	3288
BspHI	TCATGA	2 cut(s)	1264, 2410
BspLI	GGNNCC	6 cut(s)	65, 1402, 2470, 2494, 3216, 3563
BspMAI	CTGCAG	2 cut(s)	1639, 2098
BspPI	GGATC	3 cut(s)	2463, 2476, 3577
BspQI	GCTCTTC	1 cut(s)	1363
BspT104I	TTCGAA	2 cut(s)	603, 3554
BspT107I	GGYRCC	3 cut(s)	63, 2492, 3561
BspTNI	GGTCTC	1 cut(s)	1207
BsrBI	CCGCTC	1 cut(s)	120
BsrDI	GCAATG	3 cut(s)	379, 1920, 2496
BsrFI	RCCGGY	2 cut(s)	406, 416
BssAI	RCCGGY	2 cut(s)	406, 416
BssECI	CCNNGG	9 cut(s)	942, 1300, 1574, 1804, 2610, 2695, 3210, 3423, 3565
BssMI	GATC	9 cut(s)	289, 1248, 1291, 1765, 1972, 2112, 2468, 2707, 3569
BssNAI	GTATAC	1 cut(s)	398
BssNI	GRCGYC	2 cut(s)	1333, 2882
BssSI	CACGAG	1 cut(s)	2982
BssT1I	CCWWGG	5 cut(s)	942, 2610, 2695, 3210, 3423
Bst1107I	GTATAC	1 cut(s)	398
Bst2BI	CACGAG	1 cut(s)	2982
Bst2UI	CCWGG	6 cut(s)	68, 923, 937, 1302, 1806, 2660
Bst6I	CTCTTC	3 cut(s)	572, 1363, 1533
BstACI	GRCGYC	2 cut(s)	1333, 2882
BstAPI	GCANNNNNTGC	2 cut(s)	1904, 2969
BstBAI	YACGTR	1 cut(s)	1125
BstBI	TTCGAA	2 cut(s)	603, 3554
BstC8I	GCNNGC	6 cut(s)	347, 457, 2047, 2508, 2829, 3290
BstDSI	CCRYGG	3 cut(s)	2610, 2695, 3565
BstEII	GGTNACC	1 cut(s)	1775
BstENI	CCTNNNNNAGG	1 cut(s)	2634
BstFNI	CGCG	1 cut(s)	3288
BstHHI	GCGC	2 cut(s)	2136, 3096
BstKTI	GATC	9 cut(s)	292, 1251, 1294, 1768, 1975, 2115, 2471, 2710, 3572
BstMAI	GTCTC	2 cut(s)	907, 1207
BstMBI	GATC	9 cut(s)	289, 1248, 1291, 1765, 1972, 2112, 2468, 2707, 3569
BstNI	CCWGG	6 cut(s)	68, 923, 937, 1302, 1806, 2660
BstNSI	RCATGY	3 cut(s)	393, 1011, 2049
BstPI	GGTNACC	1 cut(s)	1775
BstSCI	CCNGG	7 cut(s)	66, 921, 935, 1300, 1804, 2658, 2861
BstSFI	CTRYAG	3 cut(s)	1635, 1908, 2094
BstSLI	GKGCMC	2 cut(s)	2621, 2917
BstUI	CGCG	1 cut(s)	3288
BstV1I	GCAGC	8 cut(s)	184, 339, 2381, 2843, 3094, 3097, 3330, 3469
BstV2I	GAAGAC	5 cut(s)	938, 1129, 1419, 3092, 3237
BstX2I	RGATCY	1 cut(s)	2468
BstXI	CCANNNNNNTGG	2 cut(s)	23, 1209
BstYI	RGATCY	1 cut(s)	2468
BstZ17I	GTATAC	1 cut(s)	398
Bsu15I	ATCGAT	2 cut(s)	622, 2115
BsuRI	GGCC	5 cut(s)	159, 455, 589, 768, 2861
BsuTUI	ATCGAT	2 cut(s)	622, 2115
BtgI	CCRYGG	3 cut(s)	2610, 2695, 3565
BtsI	GCAGTG	1 cut(s)	2091
BtsIMutI	CAGTG	8 cut(s)	530, 644, 1155, 2091, 2115, 2214, 2532, 3050
Cac8I	GCNNGC	6 cut(s)	347, 457, 2047, 2508, 2829, 3290
CaiI	CAGNNNCTG	1 cut(s)	532
CciI	TCATGA	2 cut(s)	1264, 2410
CfoI	GCGC	2 cut(s)	2136, 3096
Cfr10I	RCCGGY	2 cut(s)	406, 416
Cfr13I	GGNCC	8 cut(s)	158, 587, 722, 767, 939, 1400, 2860, 2865
ClaI	ATCGAT	2 cut(s)	622, 2115
CseI	GACGC	4 cut(s)	1322, 2747, 3152, 3281
CsiI	ACCWGGT	1 cut(s)	935
Csp6I	GTAC	3 cut(s)	64, 1423, 3016
CspAI	ACCGGT	2 cut(s)	406, 416
CviQI	GTAC	3 cut(s)	64, 1423, 3016
DpnI	GATC	9 cut(s)	291, 1250, 1293, 1767, 1974, 2114, 2470, 2709, 3571
DpnII	GATC	9 cut(s)	289, 1248, 1291, 1765, 1972, 2112, 2468, 2707, 3569
Eam1104I	CTCTTC	3 cut(s)	572, 1363, 1533
EarI	CTCTTC	3 cut(s)	572, 1363, 1533
Ecl136II	GAGCTC	2 cut(s)	1356, 2981
Eco130I	CCWWGG	5 cut(s)	942, 2610, 2695, 3210, 3423
Eco24I	GRGCYC	2 cut(s)	1358, 2983
Eco31I	GGTCTC	1 cut(s)	1207
Eco32I	GATATC	3 cut(s)	632, 1659, 3276
Eco47I	GGWCC	4 cut(s)	722, 939, 1400, 2865
Eco53kI	GAGCTC	2 cut(s)	1356, 2981
Eco57I	CTGAAG	1 cut(s)	810
Eco72I	CACGTG	1 cut(s)	1125
Eco88I	CYCGRG	3 cut(s)	82, 334, 1573
Eco91I	GGTNACC	1 cut(s)	1775
EcoICRI	GAGCTC	2 cut(s)	1356, 2981
EcoNI	CCTNNNNNAGG	1 cut(s)	2634
EcoO109I	RGGNCCY	1 cut(s)	1400
EcoO65I	GGTNACC	1 cut(s)	1775
EcoRI	GAATTC	1 cut(s)	1543
EcoRII	CCWGG	6 cut(s)	66, 921, 935, 1300, 1804, 2658
EcoRV	GATATC	3 cut(s)	632, 1659, 3276
EcoT14I	CCWWGG	5 cut(s)	942, 2610, 2695, 3210, 3423
EcoT38I	GRGCYC	2 cut(s)	1358, 2983
ErhI	CCWWGG	5 cut(s)	942, 2610, 2695, 3210, 3423
FalI	AAGNNNNNCTT	2 cut(s)	1457, 1489
FaqI	GGGAC	3 cut(s)	1281, 1386, 3252
FauNDI	CATATG	2 cut(s)	1713, 1900
FbaI	TGATCA	1 cut(s)	289
FblI	GTMKAC	2 cut(s)	397, 3166
FriOI	GRGCYC	2 cut(s)	1358, 2983
FspBI	CTAG	8 cut(s)	33, 468, 1520, 2238, 2271, 2382, 2631, 3384
FspI	TGCGCA	1 cut(s)	3095
GlaI	GCGC	2 cut(s)	2135, 3095
GsaI	CCCAGC	1 cut(s)	2938
GsuI	CTGGAG	3 cut(s)	999, 1653, 2091
HaeIII	GGCC	5 cut(s)	159, 455, 589, 768, 2861
HapII	CCGG	4 cut(s)	407, 417, 2863, 3019
HgaI	GACGC	4 cut(s)	1322, 2747, 3152, 3281
HhaI	GCGC	2 cut(s)	2136, 3096
Hin1I	GRCGYC	2 cut(s)	1333, 2882
Hin6I	GCGC	2 cut(s)	2134, 3094
HinP1I	GCGC	2 cut(s)	2134, 3094
HpaII	CCGG	4 cut(s)	407, 417, 2863, 3019
HphI	GGTGA	9 cut(s)	727, 1023, 1244, 1787, 1791, 1833, 3097, 3455, 3500
Hpy166II	GTNNAC	8 cut(s)	398, 677, 1517, 1533, 2606, 2619, 2774, 3167
Hpy8I	GTNNAC	8 cut(s)	398, 677, 1517, 1533, 2606, 2619, 2774, 3167
HpyAV	CCTTC	8 cut(s)	179, 566, 1038, 1173, 1696, 1872, 2395, 2572
HpyCH4IV	ACGT	5 cut(s)	1124, 2232, 2882, 3169, 3370
HpySE526I	ACGT	5 cut(s)	1124, 2232, 2882, 3169, 3370
Hsp92I	GRCGYC	2 cut(s)	1333, 2882
HspAI	GCGC	2 cut(s)	2134, 3094
KpnI	GGTACC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	9 cut(s)	289, 1248, 1291, 1765, 1972, 2112, 2468, 2707, 3569
LguI	GCTCTTC	1 cut(s)	1363
LmnI	GCTCC	6 cut(s)	1319, 1578, 1895, 2755, 3180, 3214
Lsp1109I	GCAGC	8 cut(s)	184, 339, 2381, 2843, 3094, 3097, 3330, 3469
MabI	ACCWGGT	1 cut(s)	935
MaeI	CTAG	8 cut(s)	33, 468, 1520, 2238, 2271, 2382, 2631, 3384
MaeII	ACGT	5 cut(s)	1124, 2232, 2882, 3169, 3370
MalI	GATC	9 cut(s)	291, 1250, 1293, 1767, 1974, 2114, 2470, 2709, 3571
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	9 cut(s)	289, 1248, 1291, 1765, 1972, 2112, 2468, 2707, 3569
MfeI	CAATTG	3 cut(s)	1454, 2777, 3544
MflI	RGATCY	1 cut(s)	2468
MhlI	GDGCHC	5 cut(s)	341, 1358, 2621, 2917, 2983
MlyI	GAGTC	4 cut(s)	328, 434, 770, 1803
MmeI	TCCRAC	7 cut(s)	1011, 1030, 1468, 1882, 2369, 2546, 3232
MroXI	GAANNNNTTC	4 cut(s)	272, 1644, 1881, 3261
MslI	CAYNNNNRTG	6 cut(s)	624, 1207, 1761, 1938, 3043, 3402
MspA1I	CMGCKG	1 cut(s)	3178
MspI	CCGG	4 cut(s)	407, 417, 2863, 3019
MspR9I	CCNGG	7 cut(s)	68, 923, 937, 1302, 1806, 2660, 2863
MunI	CAATTG	3 cut(s)	1454, 2777, 3544
Mva1269I	GAATGC	5 cut(s)	1056, 1101, 1135, 2260, 2383
MvaI	CCWGG	6 cut(s)	68, 923, 937, 1302, 1806, 2660
MvnI	CGCG	1 cut(s)	3288
NciI	CCSGG	1 cut(s)	2863
NcoI	CCATGG	2 cut(s)	2610, 2695
NdeI	CATATG	2 cut(s)	1713, 1900
NdeII	GATC	9 cut(s)	289, 1248, 1291, 1765, 1972, 2112, 2468, 2707, 3569
NlaIV	GGNNCC	6 cut(s)	65, 1402, 2470, 2494, 3216, 3563
NmuCI	GTSAC	9 cut(s)	528, 793, 1120, 1232, 1604, 1775, 1839, 2078, 2952
NsbI	TGCGCA	1 cut(s)	3095
NspI	RCATGY	3 cut(s)	393, 1011, 2049
NspV	TTCGAA	2 cut(s)	603, 3554
PaeI	GCATGC	1 cut(s)	2049
PaeR7I	CTCGAG	1 cut(s)	334
PagI	TCATGA	2 cut(s)	1264, 2410
PciI	ACATGT	2 cut(s)	389, 1007
PciSI	GCTCTTC	1 cut(s)	1363
PctI	GAATGC	5 cut(s)	1056, 1101, 1135, 2260, 2383
PdmI	GAANNNNTTC	4 cut(s)	272, 1644, 1881, 3261
PflFI	GACNNNGTC	1 cut(s)	937
PfoI	TCCNGGA	1 cut(s)	2658
PinAI	ACCGGT	2 cut(s)	406, 416
PleI	GAGTC	4 cut(s)	327, 434, 769, 1803
PmaCI	CACGTG	1 cut(s)	1125
PmlI	CACGTG	1 cut(s)	1125
PpsI	GAGTC	4 cut(s)	327, 434, 769, 1803
Ppu21I	YACGTR	1 cut(s)	1125
PpuMI	RGGWCCY	1 cut(s)	1400
PscI	ACATGT	2 cut(s)	389, 1007
PshBI	ATTAAT	2 cut(s)	248, 2928
PsiI	TTATAA	2 cut(s)	3431, 3510
Psp124BI	GAGCTC	2 cut(s)	1358, 2983
Psp5II	RGGWCCY	1 cut(s)	1400
Psp6I	CCWGG	6 cut(s)	66, 921, 935, 1300, 1804, 2658
PspCI	CACGTG	1 cut(s)	1125
PspEI	GGTNACC	1 cut(s)	1775
PspFI	CCCAGC	1 cut(s)	2934
PspGI	CCWGG	6 cut(s)	66, 921, 935, 1300, 1804, 2658
PspN4I	GGNNCC	6 cut(s)	65, 1402, 2470, 2494, 3216, 3563
PspPI	GGNCC	8 cut(s)	158, 587, 722, 767, 939, 1400, 2860, 2865
PspPPI	RGGWCCY	1 cut(s)	1400
PstI	CTGCAG	2 cut(s)	1639, 2098
PstNI	CAGNNNCTG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	2468
PsyI	GACNNNGTC	1 cut(s)	937
RsaI	GTAC	3 cut(s)	65, 1424, 3017
RsaNI	GTAC	3 cut(s)	64, 1423, 3016
RseI	CAYNNNNRTG	6 cut(s)	624, 1207, 1761, 1938, 3043, 3402
SacI	GAGCTC	2 cut(s)	1358, 2983
SapI	GCTCTTC	1 cut(s)	1363
Sau3AI	GATC	9 cut(s)	289, 1248, 1291, 1765, 1972, 2112, 2468, 2707, 3569
Sau96I	GGNCC	8 cut(s)	158, 587, 722, 767, 939, 1400, 2860, 2865
SchI	GAGTC	4 cut(s)	328, 434, 770, 1803
ScrFI	CCNGG	7 cut(s)	68, 923, 937, 1302, 1806, 2660, 2863
SduI	GDGCHC	5 cut(s)	341, 1358, 2621, 2917, 2983
SexAI	ACCWGGT	1 cut(s)	935
SfcI	CTRYAG	3 cut(s)	1635, 1908, 2094
Sfr274I	CTCGAG	1 cut(s)	334
SfuI	TTCGAA	2 cut(s)	603, 3554
SinI	GGWCC	4 cut(s)	722, 939, 1400, 2865
SlaI	CTCGAG	1 cut(s)	334
SmiMI	CAYNNNNRTG	6 cut(s)	624, 1207, 1761, 1938, 3043, 3402
SmlI	CTYRAG	2 cut(s)	334, 2822
SmoI	CTYRAG	2 cut(s)	334, 2822
SpeI	ACTAGT	2 cut(s)	467, 1519
SphI	GCATGC	1 cut(s)	2049
SsiI	CCGC	6 cut(s)	120, 156, 1921, 2146, 2769, 3178
SspI	AATATT	2 cut(s)	1160, 1561
SspMI	CTAG	8 cut(s)	33, 468, 1520, 2238, 2271, 2382, 2631, 3384
SstI	GAGCTC	2 cut(s)	1358, 2983
StyD4I	CCNGG	7 cut(s)	66, 921, 935, 1300, 1804, 2658, 2861
StyI	CCWWGG	5 cut(s)	942, 2610, 2695, 3210, 3423
TaiI	ACGT	5 cut(s)	1127, 2235, 2885, 3172, 3373
TaqI	TCGA	8 cut(s)	335, 603, 622, 2115, 2701, 2741, 3222, 3554
TaqII	GACCGA	1 cut(s)	1493
TatI	WGTACW	1 cut(s)	1422
TauI	GCSGC	1 cut(s)	159
TscAI	CASTG	8 cut(s)	537, 651, 1155, 2098, 2115, 2214, 2539, 3050
TseFI	GTSAC	9 cut(s)	528, 793, 1120, 1232, 1604, 1775, 1839, 2078, 2952
TseI	GCWGC	9 cut(s)	12, 172, 327, 2369, 2831, 3107, 3110, 3318, 3482
Tsp45I	GTSAC	9 cut(s)	528, 793, 1120, 1232, 1604, 1775, 1839, 2078, 2952
TspGWI	ACGGA	1 cut(s)	2018
TspRI	CASTG	8 cut(s)	537, 651, 1155, 2098, 2115, 2214, 2539, 3050
Tth111I	GACNNNGTC	1 cut(s)	937
VneI	GTGCAC	1 cut(s)	2617
VpaK11BI	GGWCC	4 cut(s)	722, 939, 1400, 2865
VspI	ATTAAT	2 cut(s)	248, 2928
XagI	CCTNNNNNAGG	1 cut(s)	2634
XapI	RAATTY	6 cut(s)	355, 610, 740, 1269, 1543, 1853
XceI	RCATGY	3 cut(s)	393, 1011, 2049
XcmI	CCANNNNNNNNNTGG	1 cut(s)	821
XhoI	CTCGAG	1 cut(s)	334
XmiI	GTMKAC	2 cut(s)	397, 3166
XmnI	GAANNNNTTC	4 cut(s)	272, 1644, 1881, 3261
XspI	CTAG	8 cut(s)	33, 468, 1520, 2238, 2271, 2382, 2631, 3384
ZraI	GACGTC	1 cut(s)	2883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.