Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002113

Physical Location & Seq

Genomic Coordinates Forward (+)

3948032 .. 3948911

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1046500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGATGCACTCCTAAACCTAGTAAAAAGATTGTTTCAGCTGATGTAGGGAACCAGAATAATGTTGAGAAAGTTGTCAATAGCAATGGTCATGATGTGGGGCGTAAAATAGAGCCTTTAACTAAGCAATCAAAGCTGAAAAAGGATCTCCCAATGGATGATTTGAAATTGTCACGTCCCAAGAAGATCTTGAAAGTAGCCAATGGTGCTCCCAAGAAAGCAACATGTAGGCCAGTTGCAGCTGGACATGTACAGTTCGGCAAATCCAAGAAACTAAATCCCTGCCCTAAATCTTCTGGATGCGCCCGAGTGTCAATTAATGGCTGGGAATGGCAAAGATGGTCACAAAATGCAAGTCCTGCTGAAAGAGCCCGTGTTAGGGGAATTACATATGTTAATGCAGAGTATCAATGTTTTGATATTAATACATCACAGTGGTCAAATGGCAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAGATGCGCAATCTTGCTGCTGCTGCTGATGGGGCTGACCTTCTGAAAGCTACTCAGTTAAAGGCGAGGAAAAAACTACTACAATTCCAGCGAAGCAAGATACATGATTGGGGTCTTGTTGCATTGCAGCCAATTGAGGCAGAAGACTTTGTTATTGAATATGTTGGAGAACTGATTCGTCCCAGGGTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009909 GO:0009987 GO:0010228 GO:0010452 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0051568 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

224

Amino Acids

24.77

Weight (kDa)

10.07

Isoelectric Point (pI)

27.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400
fragaria_vesca	FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810
malus_domestica	MD02G1278400.v1.1 MD07G1046400.v1.1 MD07G1046500.v1.1
prunus_persica	Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1
pyrus_communis	pycom02g23860
rosa_chinensis	RchiOBHm_Chr7g0217731
rosa_laevigata	RLG00000002444
rosa_multiflora	Rmu_co8471317.1_g000001 Rmu_sc0000202.1_g000011
rosa_roxburghii	Rroxscaffold_3G00241740
rosa_rugosa	Rorug07G0170800 Rorug07G0170800
rosa_samantha	Rh7AG311300 Rh7BG303200 Rh7CG330300 Rh7DG311100
rosa_wichuraiana	Rw7G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	485
AclWI	GGATC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	378, 379
AflIII	ACRYGT	2 cut(s)	224, 247
AgsI	TTSAA	3 cut(s)	166, 193, 635
AjiI	CACGTC	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	659
AluBI	AGCT	4 cut(s)	41, 136, 242, 527
AluI	AGCT	4 cut(s)	41, 136, 242, 527
Alw21I	GWGCWC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	1 cut(s)	230
ApeKI	GCWGC	5 cut(s)	239, 494, 497, 500, 604
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
AseI	ATTAAT	2 cut(s)	318, 423
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	2 cut(s)	305, 486
AsuHPI	GGTGA	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	5 cut(s)	251, 481, 484, 487, 616
BccI	CCATC	2 cut(s)	333, 500
BciT130I	CCWGG	1 cut(s)	661
BfaI	CTAG	1 cut(s)	21
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	5 cut(s)	240, 495, 498, 501, 605
BlsI	GCNGC	5 cut(s)	241, 496, 499, 502, 606
Bme1390I	CCNGG	1 cut(s)	661
BmeT110I	CYCGRG	1 cut(s)	306
BmgBI	CACGTC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	661
BmsI	GCATC	2 cut(s)	290, 471
BpiI	GAAGAC	1 cut(s)	627
BsaJI	CCNNGG	2 cut(s)	659, 660
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 379
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	2 cut(s)	91, 599
BseBI	CCWGG	1 cut(s)	661
BseDI	CCNNGG	2 cut(s)	659, 660
BseGI	GGATG	3 cut(s)	11, 163, 305
BseLI	CCNNNNNNNGG	2 cut(s)	378, 379
BseMI	GCAATG	2 cut(s)	91, 599
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	5 cut(s)	251, 481, 484, 487, 616
BseYI	CCCAGC	1 cut(s)	324
BshFI	GGCC	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	306
BslFI	GGGAC	2 cut(s)	162, 642
BslI	CCNNNNNNNGG	2 cut(s)	378, 379
BsmFI	GGGAC	2 cut(s)	162, 642
BsnI	GGCC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	211, 373
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	145, 186
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	544
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	153
BsrDI	GCAATG	2 cut(s)	91, 599
BsrGI	TGTACA	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	659, 660
BssMI	GATC	2 cut(s)	145, 186
Bst2UI	CCWGG	1 cut(s)	661
Bst4CI	ACNGT	2 cut(s)	255, 435
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstAUI	TGTACA	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	123, 531
BstF5I	GGATG	3 cut(s)	11, 163, 305
BstHHI	GCGC	2 cut(s)	305, 486
BstKTI	GATC	2 cut(s)	148, 189
BstMBI	GATC	2 cut(s)	145, 186
BstMWI	GCNNNNNNNGC	6 cut(s)	133, 206, 359, 368, 500, 509
BstNI	CCWGG	1 cut(s)	661
BstNSI	RCATGY	2 cut(s)	228, 251
BstSCI	CCNGG	1 cut(s)	659
BstV1I	GCAGC	5 cut(s)	251, 481, 484, 487, 616
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	2 cut(s)	145, 186
BstYI	RGATCY	2 cut(s)	145, 186
BsuRI	GGCC	1 cut(s)	232
BtrI	CACGTC	1 cut(s)	176
BtsCI	GGATG	3 cut(s)	11, 163, 305
BtsIMutI	CAGTG	1 cut(s)	440
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	2 cut(s)	305, 486
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	4 cut(s)	92, 225, 248, 581
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	2 cut(s)	123, 531
DpnI	GATC	2 cut(s)	147, 188
DpnII	GATC	2 cut(s)	145, 186
Eco24I	GRGCYC	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	659
EcoT38I	GRGCYC	1 cut(s)	373
FaeI	CATG	4 cut(s)	95, 228, 251, 584
FaiI	YATR	8 cut(s)	93, 226, 249, 391, 393, 582, 639, 667
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	2 cut(s)	162, 642
FatI	CATG	4 cut(s)	91, 224, 247, 580
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	5 cut(s)	240, 495, 498, 501, 605
FokI	GGATG	3 cut(s)	18, 170, 312
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	5 cut(s)	240, 495, 498, 501, 605
FspBI	CTAG	1 cut(s)	21
FspI	TGCGCA	1 cut(s)	485
GlaI	GCGC	2 cut(s)	304, 485
GluI	GCNGC	5 cut(s)	240, 495, 498, 501, 605
GsaI	CCCAGC	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	232
HhaI	GCGC	2 cut(s)	305, 486
Hin1II	CATG	4 cut(s)	95, 228, 251, 584
Hin6I	GCGC	2 cut(s)	303, 484
HinP1I	GCGC	2 cut(s)	303, 484
HinfI	GANTC	1 cut(s)	652
HphI	GGTGA	1 cut(s)	487
Hpy188I	TCNGA	1 cut(s)	522
Hpy188III	TCNNGA	3 cut(s)	92, 190, 297
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	2 cut(s)	255, 435
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	7 cut(s)	9, 239, 353, 401, 461, 599, 604
HpyF10VI	GCNNNNNNNGC	6 cut(s)	133, 206, 359, 368, 500, 509
HpyF3I	CTNAG	2 cut(s)	123, 531
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	4 cut(s)	95, 228, 251, 584
HspAI	GCGC	2 cut(s)	303, 484
Kzo9I	GATC	2 cut(s)	145, 186
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	9 cut(s)	68, 228, 246, 282, 295, 310, 372, 578, 646
Lsp1109I	GCAGC	5 cut(s)	251, 481, 484, 487, 616
LweI	GCATC	2 cut(s)	290, 471
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	2 cut(s)	171, 342
MalI	GATC	2 cut(s)	147, 188
MboI	GATC	2 cut(s)	145, 186
MboII	GAAGA	4 cut(s)	196, 285, 490, 632
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	2 cut(s)	145, 186
MhlI	GDGCHC	2 cut(s)	211, 373
MluCI	AATT	5 cut(s)	167, 315, 384, 560, 609
MmeI	TCCRAC	1 cut(s)	622
MnlI	CCTC	2 cut(s)	537, 607
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	5 cut(s)	119, 318, 396, 423, 536
MslI	CAYNNNNRTG	1 cut(s)	433
MspA1I	CMGCKG	2 cut(s)	41, 242
MspR9I	CCNGG	1 cut(s)	661
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	661
MwoI	GCNNNNNNNGC	6 cut(s)	133, 206, 359, 368, 500, 509
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	2 cut(s)	145, 186
NlaIII	CATG	4 cut(s)	95, 228, 251, 584
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	2 cut(s)	171, 342
NsbI	TGCGCA	1 cut(s)	485
NspI	RCATGY	2 cut(s)	228, 251
PagI	TCATGA	1 cut(s)	91
PasI	CCCWGGG	1 cut(s)	660
PciI	ACATGT	2 cut(s)	224, 247
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	652
PkrI	GCNGC	5 cut(s)	241, 496, 499, 502, 606
PscI	ACATGT	2 cut(s)	224, 247
PshBI	ATTAAT	2 cut(s)	318, 423
Psp6I	CCWGG	1 cut(s)	659
PspFI	CCCAGC	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	659
PspN4I	GGNNCC	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	145, 186
PvuII	CAGCTG	2 cut(s)	41, 242
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	433
SaqAI	TTAA	5 cut(s)	119, 318, 396, 423, 536
SatI	GCNGC	5 cut(s)	240, 495, 498, 501, 605
Sau3AI	GATC	2 cut(s)	145, 186
ScrFI	CCNGG	1 cut(s)	661
SduI	GDGCHC	2 cut(s)	211, 373
SetI	ASST	7 cut(s)	22, 43, 138, 178, 244, 519, 529
SfaNI	GCATC	2 cut(s)	290, 471
SmiMI	CAYNNNNRTG	1 cut(s)	433
Sse9I	AATT	5 cut(s)	167, 315, 384, 560, 609
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	659
TaaI	ACNGT	2 cut(s)	255, 435
TaiI	ACGT	1 cut(s)	178
TasI	AATT	5 cut(s)	167, 315, 384, 560, 609
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	652
Tru1I	TTAA	5 cut(s)	119, 318, 396, 423, 536
Tru9I	TTAA	5 cut(s)	119, 318, 396, 423, 536
TscAI	CASTG	1 cut(s)	440
TseFI	GTSAC	2 cut(s)	171, 342
TseI	GCWGC	5 cut(s)	239, 494, 497, 500, 604
Tsp45I	GTSAC	2 cut(s)	171, 342
TspRI	CASTG	1 cut(s)	440
VspI	ATTAAT	2 cut(s)	318, 423
XceI	RCATGY	2 cut(s)	228, 251
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.