Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002113

Physical Location & Seq

Genomic Coordinates Forward (+)

34302715 .. 34309519

Gene Structure 6805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002444

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3585 bp

ATGGAGATGAGTTGCCAGTCAAATGGCAATTCTAGTGATATTCAACAGCTCTGTAACTCTGGGGGGACCTCATACCAGGACAAGACTTACTCGGGCTATATGCCTCCTCCTCCTTTTGTGAGCGGATGGATGTATGTTAATGAACAAGGACAAATGTGTGGCCCGTATATTCAGCAGCAGTTATTTGAAGGTTTATCTACTGGTTTTTTGCCAGATGAGCTTCCAGTATATCCTGTGGTAAATGGGGCATTAATAAACCCAATACCATTGAAGTATTTCAAGCAGTTCCCTGATCATGTTGCTACTGGGTTTGCATATCTGAGTCTGGGCAGCATCTCAAGCACAAGCACGCCTACAAATTCTCTTACATCTTGCAATGGGGATTTGGCTACATGTAGTATACCTACACCGGTTGCTACCGGTTATCCTGATTTACAGTATGACTCCACTTCACAGGCCAGCTACGACACTAGTGTTTCCAATAAGTTGATATTGAACTCCAAAGCACCTAATCAAGTTACTTCAAATCAGTCACTGTCAAGTAAAGATTCTTGCTGGTTGTATGAGGATGAGGAAGGGAAGAGAAATGGGCCATATTCTCTTTTCGAATTAAATTCTTGGCATCAATATGGATATCTTCGGGATTCGCTGACGATTTATCATGTCAAGAACAAGTGTAAACCGTTCACACTGTCATCGGTTCTCAATTCATGGAAACTTGATGGACCTCAAACCATCACCAAATTTGATGCCAAATGTAATGAGTCTGGCCCATTGGTAAGCATTATATCTGAAGTCACAGAGGGAGTTTCTTCCCAACTGCACTACGGAATCATGAAATCAGCTCGTAGAGTTGTTTTAGATGAGATAATCAGCAATGTGATTGCTGAGTTTGTTACCATCGCGAAAGCTCAGAGACTTAACCAGGATATGAAGACCTGTTCCTTGGATGCAAAAAAGTCTGAAATTGACGGTGAGGCCGGAGTTTCCGACTGTGTTGCTGAAAGGACATGTATCAATCAAGATTCGCCTTCACCAATGACTAAATCTGTTGGAAGCATTCAGAACTTTTGGGATTCTTATGCAGTTGTTTGTAGAATGCTCTTTGATTATTGCATGGAAGTCATGTGGAATGCTGTCTTCTATGATTCAGTGGCAGAATATTCATCTGCTTGGAGGAGAAGGAAACTATGGACTGGCTCTCCATTGTTGTGGAGACCTCCTAATAGATGTGGTGACTGGGTGGAAAAGATCACAAAATTACCTCATGAAATTTTATCTGATAATGATGATGATCGTCCCCCTGGTTTTGAACTGTTGGGAGCTGAGTTAGGGCGTCATGCTCAGCCATCATTGAGCTCTTCATTGGTTCTAATGGAGGAAAAACCACCTAAACAGATAGGTCCCTCATACGAAGACATGAAGTACATTGTAGAGCATATAGAAAATGAACTTCAATTGTCTGCAAAAAGTTCCTTGACCGAGTATGTTGGATGCTTTGTTGATGAGGAAGTGAGTAAACTAGTTAATTTGTCCACAGAAGAGAATTCAATAAAGGAGAATATTGACTGTTCCCCGAGGAGCATAGGTGGCTCATCTGACCTATGTGACAATTTGAGGAATTCAAATAACACATCTGCAGAAATTATTCTGTCTGAGATATCCCTAACTACAGAAGTAGAAAAACCCTTCCATAGTTCTTTTCCTGAAAATCGTATGTCTAATTTTCTGGCAAGTGCTTTTAAGGAAGTCTGTTCTCATGTTGATGATCTTGATGGTGACCAAGAAGTAAATGAACCATTACCCCCTGGACTCATAGCCGATGTTAAAACTCTTGGACAGTCACCTATTTGCAAATTCCGACCTTCAAGGTCAGAAGAATGTATTCCTAAGATTGGAGCATATGTTGCTACAGCAATGTTGCGGAAGAAACTCCATGATGATGTTATTGGAGAATGGAAATCATTATTTATTGATCTGGCTCTTAAGAAGTTTCTTGCATCATGGCGAACTTCAAGGAAGAACCATATGCGTAATGAGGAAAAAGCATGCAACACCAATAAAGAAGAATTAAAGCATTGTCACAGTTCTATCACTGCAGAAGTATCTCCAGTGATCGATGAATTTACATATCAGCGCAAGAGGTTGCGGAAAAAGTCGGGTTCTTCTGGACTTGTAACTGTAATTGATACTGGGTTAAAGAGTGAAACAGTGGAAAAAGCAAAGAAGCTACATGTTGCTAGAAATGTGCCAAAGAATGCTACTGTGATTCCTAGAAAAAGAGGTCTAAGCAAACCCCAAACTGAATCATCTGTTGATGCCATATCTGTGAAAGTTAATTCTAAAAGGCTTTCATCAACTGATAAGTCAGCAGCTAAGAATGCTAGTTGTCGGAAGCCATTGAAGGGTTCTCATGAACTAAGTTGTGAGCCCATTGACGATGTTATTGATGGCATCAGCTCAGTTAGGGGATCCCAAACTGAATTATCTGTTGGTGCCATTGCCTTGCAAGCCATTGATACGAGGTGTTCATCCACTGGTACATTAGTAGCTAATAATGCTATTAGTCGGAAACGATTGAAGGTTTCTCATGCAGTTAAAGGTAGTGAACCCATGGAGTGCACTCCTAAACCTAGTAAAAGGATGATTTCAGCTCATGTCCAGGATCACAATGATATTGAGAATGTTGTAAATAGCCATGGTCGTGATGATCAGCTTAAAGGAGAGCCTTTAACTAAGGTGTCGAAGCTGAAAAGGGAGCGTCCAGTTGGCGGTTCACAATTGCCACATCCCAAAAAGGTCTTGAAAGTAGCCAATGATGTTCTCAAGCAAGCAGCAAATATCCCAGTCGCAGTAAGAAAGGCCCGGTCCAGTAAGTCAAAGACATCAAATCCTTGGCCTAAATCTGATGGATGTGCCCGTGCTTCAATTAATGGCTGGGAATGGCATAGATGGTCACTAAATGCAACTCCTGCTGAAAGAGCTCGTGTTAGGGGAATCAAATATGTTAATGCCCAGTACCGGACTTCTGACACCAATACATCACAGTGGTCAAATGGCAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAGATGCGCAGTCTTCTTGCTGCTGCTGAGGGTGCTGACCTTTTGAAAGCCACTCAATTAAAGGCAAGGAAAAAGCGTCTACGTTTCCAGCGGAGCAAGATACATGATTGGGGCCTTATTGCCTTGGAGCCAATCGAGGCAGAAGACTTTGTTATTGAATATGTTGGAGAATTGATTCGTCCCCAGATATCTGATATACGCGAGCGTCATTACGAGAAGATGGGAATTGGCAGCAGTTATTTGTTTAGGATTGATGATGGTTATGTGGTTGATGCTACAAAACGTGGAGGAATTGCTAGATTCATAAACCATTCTTGTGAGCCTAACTGCTACACCAAGGTTATAAGTGTTGAGGGTGAGAAAAAGATTTTCATTTATGCAAAAAGACATATAGCTGCTGGTGAAGAAATTACTTACAATTATAAGTTCCCATTAGAGGAGAAAAAGATTCCATGCAATTGTGGTTCGAAAAGGTGTCGTGGATCATTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009909 GO:0009987 GO:0010228 GO:0010452 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0051568 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

1195

Amino Acids

132.78

Weight (kDa)

8.6

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GYF	PF02213	186 - 224	5.2e-06	GYF domain
SET	PF00856	1067 - 1172	1.2e-27	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400
fragaria_vesca	FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810
malus_domestica	MD02G1278400.v1.1 MD07G1046400.v1.1 MD07G1046500.v1.1
prunus_persica	Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1
pyrus_communis	pycom02g23860
rosa_chinensis	RchiOBHm_Chr7g0217731
rosa_laevigata	RLG00000002444
rosa_multiflora	Rmu_co8471317.1_g000001 Rmu_sc0000202.1_g000011
rosa_roxburghii	Rroxscaffold_3G00241740
rosa_rugosa	Rorug07G0170800 Rorug07G0170800
rosa_samantha	Rh7AG311300 Rh7BG303200 Rh7CG330300 Rh7DG311100
rosa_wichuraiana	Rw7G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	3434, 3513
Acc16I	TGCGCA	1 cut(s)	3098
AccB1I	GGYRCC	1 cut(s)	2495
AccBSI	CCGCTC	1 cut(s)	123
AccI	GTMKAC	2 cut(s)	400, 3169
AccII	CGCG	2 cut(s)	905, 3291
AciI	CCGC	5 cut(s)	123, 1924, 2149, 2772, 3181
AclWI	GGATC	4 cut(s)	2466, 2479, 2673, 3580
AcsI	RAATTY	8 cut(s)	358, 613, 743, 1272, 1546, 1621, 1856, 2123
AcuI	CTGAAG	1 cut(s)	813
AcyI	GRCGYC	1 cut(s)	1336
AfaI	GTAC	3 cut(s)	1427, 2542, 3020
AfiI	CCNNNNNNNGG	5 cut(s)	1895, 2405, 2771, 3021, 3526
AflII	CTTAAG	1 cut(s)	1985
AflIII	ACRYGT	3 cut(s)	392, 1010, 2233
AgeI	ACCGGT	2 cut(s)	409, 419
AhlI	ACTAGT	2 cut(s)	470, 1522
AjnI	CCWGG	5 cut(s)	75, 924, 1303, 1807, 2661
AjuI	GAANNNNNNNTTGG	2 cut(s)	2475, 2507
Alw21I	GWGCWC	3 cut(s)	1361, 2624, 2986
Alw26I	GTCTC	2 cut(s)	910, 1210
Alw44I	GTGCAC	1 cut(s)	2620
AlwI	GGATC	4 cut(s)	2466, 2479, 2673, 3580
AlwNI	CAGNNNCTG	1 cut(s)	535
Ama87I	CYCGRG	2 cut(s)	91, 1576
AoxI	GGCC	8 cut(s)	160, 456, 590, 769, 978, 2862, 2897, 3202
ApaLI	GTGCAC	1 cut(s)	2620
ApeKI	GCWGC	8 cut(s)	175, 330, 2372, 2834, 3110, 3113, 3321, 3485
ApoI	RAATTY	8 cut(s)	358, 613, 743, 1272, 1546, 1621, 1856, 2123
AseI	ATTAAT	2 cut(s)	251, 2931
AsiGI	ACCGGT	2 cut(s)	409, 419
Asp700I	GAANNNNTTC	4 cut(s)	275, 1647, 1884, 3264
AspLEI	GCGC	2 cut(s)	2139, 3099
AspS9I	GGNCC	9 cut(s)	66, 161, 590, 725, 770, 1403, 2863, 2868, 3202
AsuC2I	CCSGG	1 cut(s)	2866
AsuHPI	GGTGA	9 cut(s)	730, 986, 1026, 1247, 1790, 1836, 3100, 3458, 3503
AsuII	TTCGAA	2 cut(s)	606, 3557
AvaI	CYCGRG	2 cut(s)	91, 1576
AvaII	GGWCC	4 cut(s)	66, 725, 1403, 2868
BaeGI	GKGCMC	2 cut(s)	2624, 2920
BaeI	ACNNNNGTAYC	2 cut(s)	2532, 2565
BamHI	GGATCC	1 cut(s)	2471
BanI	GGYRCC	1 cut(s)	2495
BanII	GRGCYC	3 cut(s)	1361, 2433, 2986
BauI	CACGAG	1 cut(s)	2985
BbsI	GAAGAC	5 cut(s)	941, 1132, 1422, 3095, 3240
Bbv12I	GWGCWC	3 cut(s)	1361, 2624, 2986
BbvCI	CCTCAGC	1 cut(s)	3117
BbvI	GCAGC	8 cut(s)	187, 342, 2384, 2846, 3097, 3100, 3333, 3472
BcgI	CGANNNNNNTGC	2 cut(s)	980, 1014
BciT130I	CCWGG	5 cut(s)	77, 926, 1305, 1809, 2663
BclI	TGATCA	2 cut(s)	292, 2710
BcnI	CCSGG	1 cut(s)	2866
BcoDI	GTCTC	2 cut(s)	910, 1210
BcuI	ACTAGT	2 cut(s)	470, 1522
BfaI	CTAG	8 cut(s)	33, 471, 1523, 2241, 2274, 2385, 2634, 3387
BfmI	CTRYAG	4 cut(s)	1638, 1671, 1911, 2097
BfrI	CTTAAG	1 cut(s)	1985
BisI	GCNGC	8 cut(s)	176, 331, 2373, 2835, 3111, 3114, 3322, 3486
BlpI	GCTNAGC	1 cut(s)	1344
BlsI	GCNGC	8 cut(s)	177, 332, 2374, 2836, 3112, 3115, 3323, 3487
Bme1390I	CCNGG	6 cut(s)	77, 926, 1305, 1809, 2663, 2866
Bme18I	GGWCC	4 cut(s)	66, 725, 1403, 2868
BmeT110I	CYCGRG	2 cut(s)	91, 1576
BmgT120I	GGNCC	9 cut(s)	66, 161, 590, 725, 770, 1403, 2863, 2868, 3202
BmiI	GGNNCC	6 cut(s)	67, 1405, 2473, 2497, 3203, 3219
BmrFI	CCNGG	6 cut(s)	77, 926, 1305, 1809, 2663, 2866
BmrI	ACTGGG	5 cut(s)	315, 1249, 2202, 2840, 3010
BmuI	ACTGGG	5 cut(s)	315, 1249, 2202, 2840, 3010
BpiI	GAAGAC	5 cut(s)	941, 1132, 1422, 3095, 3240
BpmI	CTGGAG	1 cut(s)	2094
Bpu10I	CCTNAGC	1 cut(s)	3117
Bpu1102I	GCTNAGC	1 cut(s)	1344
Bpu14I	TTCGAA	2 cut(s)	606, 3557
BpuEI	CTTGAG	2 cut(s)	322, 2810
BpuMI	CCSGG	1 cut(s)	2866
Bsa29I	ATCGAT	1 cut(s)	2118
BsaBI	GATNNNNATC	1 cut(s)	1293
BsaHI	GRCGYC	1 cut(s)	1336
BsaI	GGTCTC	1 cut(s)	1210
BsaJI	CCNNGG	9 cut(s)	945, 1303, 1577, 1807, 2613, 2698, 2894, 3213, 3426
BsaWI	WCCGGW	3 cut(s)	409, 419, 3021
BsaXI	ACNNNNNCTCC	6 cut(s)	1186, 1216, 1573, 1603, 1890, 1920
Bsc4I	CCNNNNNNNGG	5 cut(s)	1895, 2405, 2771, 3021, 3526
Bse118I	RCCGGY	2 cut(s)	409, 419
Bse3DI	GCAATG	4 cut(s)	382, 883, 1923, 2499
Bse8I	GATNNNNATC	1 cut(s)	1293
BseBI	CCWGG	5 cut(s)	77, 926, 1305, 1809, 2663
BseCI	ATCGAT	1 cut(s)	2118
BseDI	CCNNGG	9 cut(s)	945, 1303, 1577, 1807, 2613, 2698, 2894, 3213, 3426
BseGI	GGATG	9 cut(s)	131, 135, 574, 955, 1499, 2531, 2649, 2788, 2918
BseJI	GATNNNNATC	1 cut(s)	1293
BseLI	CCNNNNNNNGG	5 cut(s)	1895, 2405, 2771, 3021, 3526
BseMI	GCAATG	4 cut(s)	382, 883, 1923, 2499
BseMII	CTCAG	8 cut(s)	311, 879, 926, 1317, 1358, 1647, 2475, 3108
BseRI	GAGGAG	5 cut(s)	96, 99, 1192, 1594, 3542
BseSI	GKGCMC	2 cut(s)	2624, 2920
BseXI	GCAGC	8 cut(s)	187, 342, 2384, 2846, 3097, 3100, 3333, 3472
BseYI	CCCAGC	1 cut(s)	2937
BsgI	GTGCAG	1 cut(s)	806
Bsh1236I	CGCG	2 cut(s)	905, 3291
BshFI	GGCC	8 cut(s)	162, 458, 592, 771, 980, 2864, 2899, 3204
BshNI	GGYRCC	1 cut(s)	2495
BshTI	ACCGGT	2 cut(s)	409, 419
BshVI	ATCGAT	1 cut(s)	2118
BsiHKAI	GWGCWC	3 cut(s)	1361, 2624, 2986
BsiHKCI	CYCGRG	2 cut(s)	91, 1576
BsiSI	CCGG	5 cut(s)	410, 420, 981, 2866, 3022
BslFI	GGGAC	4 cut(s)	79, 1284, 1389, 3255
BslI	CCNNNNNNNGG	5 cut(s)	1895, 2405, 2771, 3021, 3526
BsmAI	GTCTC	2 cut(s)	910, 1210
BsmFI	GGGAC	4 cut(s)	79, 1284, 1389, 3255
BsmI	GAATGC	5 cut(s)	1059, 1104, 1138, 2263, 2386
BsnI	GGCC	8 cut(s)	162, 458, 592, 771, 980, 2864, 2899, 3204
Bso31I	GGTCTC	1 cut(s)	1210
BsoBI	CYCGRG	2 cut(s)	91, 1576
Bsp119I	TTCGAA	2 cut(s)	606, 3557
Bsp1286I	GDGCHC	5 cut(s)	1361, 2433, 2624, 2920, 2986
Bsp1720I	GCTNAGC	1 cut(s)	1344
Bsp19I	CCATGG	2 cut(s)	2613, 2698
Bsp68I	TCGCGA	1 cut(s)	905
BspACI	CCGC	5 cut(s)	123, 1924, 2149, 2772, 3181
BspANI	GGCC	8 cut(s)	162, 458, 592, 771, 980, 2864, 2899, 3204
BspCNI	CTCAG	8 cut(s)	312, 880, 925, 1318, 1357, 1648, 2474, 3109
BspDI	ATCGAT	1 cut(s)	2118
BspFNI	CGCG	2 cut(s)	905, 3291
BspHI	TCATGA	3 cut(s)	834, 1267, 2413
BspLI	GGNNCC	6 cut(s)	67, 1405, 2473, 2497, 3203, 3219
BspMAI	CTGCAG	2 cut(s)	1642, 2101
BspPI	GGATC	4 cut(s)	2466, 2479, 2673, 3580
BspQI	GCTCTTC	1 cut(s)	1366
BspT104I	TTCGAA	2 cut(s)	606, 3557
BspT107I	GGYRCC	1 cut(s)	2495
BspTI	CTTAAG	1 cut(s)	1985
BspTNI	GGTCTC	1 cut(s)	1210
BsrBI	CCGCTC	1 cut(s)	123
BsrDI	GCAATG	4 cut(s)	382, 883, 1923, 2499
BsrFI	RCCGGY	2 cut(s)	409, 419
BssAI	RCCGGY	2 cut(s)	409, 419
BssECI	CCNNGG	9 cut(s)	945, 1303, 1577, 1807, 2613, 2698, 2894, 3213, 3426
BssNAI	GTATAC	1 cut(s)	401
BssNI	GRCGYC	1 cut(s)	1336
BssSI	CACGAG	1 cut(s)	2985
BssT1I	CCWWGG	6 cut(s)	945, 2613, 2698, 2894, 3213, 3426
Bst1107I	GTATAC	1 cut(s)	401
Bst2BI	CACGAG	1 cut(s)	2985
Bst2UI	CCWGG	5 cut(s)	77, 926, 1305, 1809, 2663
Bst6I	CTCTTC	3 cut(s)	575, 1366, 1536
BstACI	GRCGYC	1 cut(s)	1336
BstAFI	CTTAAG	1 cut(s)	1985
BstAPI	GCANNNNNTGC	2 cut(s)	1907, 2972
BstBI	TTCGAA	2 cut(s)	606, 3557
BstC8I	GCNNGC	6 cut(s)	350, 460, 2050, 2511, 2832, 3293
BstDSI	CCRYGG	2 cut(s)	2613, 2698
BstEII	GGTNACC	1 cut(s)	1778
BstF5I	GGATG	9 cut(s)	131, 135, 574, 955, 1499, 2531, 2649, 2788, 2918
BstFNI	CGCG	2 cut(s)	905, 3291
BstHHI	GCGC	2 cut(s)	2139, 3099
BstMAI	GTCTC	2 cut(s)	910, 1210
BstNI	CCWGG	5 cut(s)	77, 926, 1305, 1809, 2663
BstNSI	RCATGY	4 cut(s)	396, 1014, 2052, 2237
BstPI	GGTNACC	1 cut(s)	1778
BstSCI	CCNGG	6 cut(s)	75, 924, 1303, 1807, 2661, 2864
BstSFI	CTRYAG	4 cut(s)	1638, 1671, 1911, 2097
BstSLI	GKGCMC	2 cut(s)	2624, 2920
BstUI	CGCG	2 cut(s)	905, 3291
BstV1I	GCAGC	8 cut(s)	187, 342, 2384, 2846, 3097, 3100, 3333, 3472
BstV2I	GAAGAC	5 cut(s)	941, 1132, 1422, 3095, 3240
BstX2I	RGATCY	1 cut(s)	2471
BstXI	CCANNNNNNTGG	2 cut(s)	23, 1212
BstYI	RGATCY	1 cut(s)	2471
BstZ17I	GTATAC	1 cut(s)	401
Bsu15I	ATCGAT	1 cut(s)	2118
BsuRI	GGCC	8 cut(s)	162, 458, 592, 771, 980, 2864, 2899, 3204
BsuTUI	ATCGAT	1 cut(s)	2118
BtgI	CCRYGG	2 cut(s)	2613, 2698
BtgZI	GCGATG	1 cut(s)	886
BtsCI	GGATG	9 cut(s)	131, 135, 574, 955, 1499, 2531, 2649, 2788, 2918
BtsI	GCAGTG	1 cut(s)	2094
BtsIMutI	CAGTG	8 cut(s)	533, 689, 1158, 2094, 2118, 2217, 2535, 3053
BtuMI	TCGCGA	1 cut(s)	905
Cac8I	GCNNGC	6 cut(s)	350, 460, 2050, 2511, 2832, 3293
CaiI	CAGNNNCTG	1 cut(s)	535
CciI	TCATGA	3 cut(s)	834, 1267, 2413
CfoI	GCGC	2 cut(s)	2139, 3099
Cfr10I	RCCGGY	2 cut(s)	409, 419
Cfr13I	GGNCC	9 cut(s)	66, 161, 590, 725, 770, 1403, 2863, 2868, 3202
ClaI	ATCGAT	1 cut(s)	2118
CseI	GACGC	4 cut(s)	1325, 2750, 3155, 3284
Csp6I	GTAC	3 cut(s)	1426, 2541, 3019
CspAI	ACCGGT	2 cut(s)	409, 419
CviQI	GTAC	3 cut(s)	1426, 2541, 3019
Eam1104I	CTCTTC	3 cut(s)	575, 1366, 1536
EarI	CTCTTC	3 cut(s)	575, 1366, 1536
Ecl136II	GAGCTC	2 cut(s)	1359, 2984
Eco130I	CCWWGG	6 cut(s)	945, 2613, 2698, 2894, 3213, 3426
Eco24I	GRGCYC	3 cut(s)	1361, 2433, 2986
Eco31I	GGTCTC	1 cut(s)	1210
Eco32I	GATATC	3 cut(s)	635, 1662, 3279
Eco47I	GGWCC	4 cut(s)	66, 725, 1403, 2868
Eco53kI	GAGCTC	2 cut(s)	1359, 2984
Eco57I	CTGAAG	1 cut(s)	813
Eco88I	CYCGRG	2 cut(s)	91, 1576
Eco91I	GGTNACC	1 cut(s)	1778
EcoICRI	GAGCTC	2 cut(s)	1359, 2984
EcoO109I	RGGNCCY	3 cut(s)	66, 1403, 3202
EcoO65I	GGTNACC	1 cut(s)	1778
EcoRI	GAATTC	2 cut(s)	1546, 1621
EcoRII	CCWGG	5 cut(s)	75, 924, 1303, 1807, 2661
EcoRV	GATATC	3 cut(s)	635, 1662, 3279
EcoT14I	CCWWGG	6 cut(s)	945, 2613, 2698, 2894, 3213, 3426
EcoT38I	GRGCYC	3 cut(s)	1361, 2433, 2986
ErhI	CCWWGG	6 cut(s)	945, 2613, 2698, 2894, 3213, 3426
FaqI	GGGAC	4 cut(s)	79, 1284, 1389, 3255
FauNDI	CATATG	2 cut(s)	1903, 2028
FbaI	TGATCA	2 cut(s)	292, 2710
FblI	GTMKAC	2 cut(s)	400, 3169
Fnu4HI	GCNGC	8 cut(s)	176, 331, 2373, 2835, 3111, 3114, 3322, 3486
FokI	GGATG	9 cut(s)	138, 142, 581, 962, 1506, 2518, 2656, 2775, 2925
FriOI	GRGCYC	3 cut(s)	1361, 2433, 2986
Fsp4HI	GCNGC	8 cut(s)	176, 331, 2373, 2835, 3111, 3114, 3322, 3486
FspBI	CTAG	8 cut(s)	33, 471, 1523, 2241, 2274, 2385, 2634, 3387
FspI	TGCGCA	1 cut(s)	3098
GlaI	GCGC	2 cut(s)	2138, 3098
GluI	GCNGC	8 cut(s)	176, 331, 2373, 2835, 3111, 3114, 3322, 3486
GsaI	CCCAGC	1 cut(s)	2941
GsuI	CTGGAG	1 cut(s)	2094
HaeIII	GGCC	8 cut(s)	162, 458, 592, 771, 980, 2864, 2899, 3204
HapII	CCGG	5 cut(s)	410, 420, 981, 2866, 3022
HgaI	GACGC	4 cut(s)	1325, 2750, 3155, 3284
HhaI	GCGC	2 cut(s)	2139, 3099
Hin1I	GRCGYC	1 cut(s)	1336
Hin6I	GCGC	2 cut(s)	2137, 3097
HinP1I	GCGC	2 cut(s)	2137, 3097
HpaII	CCGG	5 cut(s)	410, 420, 981, 2866, 3022
HphI	GGTGA	9 cut(s)	730, 986, 1026, 1247, 1790, 1836, 3100, 3458, 3503
Hpy166II	GTNNAC	9 cut(s)	401, 680, 687, 1520, 1536, 2609, 2622, 2777, 3170
Hpy8I	GTNNAC	9 cut(s)	401, 680, 687, 1520, 1536, 2609, 2622, 2777, 3170
HpyAV	CCTTC	8 cut(s)	182, 569, 1041, 1176, 1699, 1875, 2398, 2575
HpyCH4IV	ACGT	2 cut(s)	3172, 3373
HpySE526I	ACGT	2 cut(s)	3172, 3373
Hsp92I	GRCGYC	1 cut(s)	1336
HspAI	GCGC	2 cut(s)	2137, 3097
Ksp22I	TGATCA	2 cut(s)	292, 2710
LguI	GCTCTTC	1 cut(s)	1366
LmnI	GCTCC	6 cut(s)	1322, 1581, 1898, 2758, 3183, 3217
Lsp1109I	GCAGC	8 cut(s)	187, 342, 2384, 2846, 3097, 3100, 3333, 3472
MaeI	CTAG	8 cut(s)	33, 471, 1523, 2241, 2274, 2385, 2634, 3387
MaeII	ACGT	2 cut(s)	3172, 3373
MbiI	CCGCTC	1 cut(s)	123
MfeI	CAATTG	3 cut(s)	1457, 2780, 3547
MflI	RGATCY	1 cut(s)	2471
MhlI	GDGCHC	5 cut(s)	1361, 2433, 2624, 2920, 2986
MlyI	GAGTC	4 cut(s)	331, 437, 773, 1806
MmeI	TCCRAC	7 cut(s)	1014, 1033, 1471, 1885, 2372, 2549, 3235
MroXI	GAANNNNTTC	4 cut(s)	275, 1647, 1884, 3264
MslI	CAYNNNNRTG	8 cut(s)	627, 1210, 1764, 1941, 2327, 2703, 3046, 3405
MspA1I	CMGCKG	1 cut(s)	3181
MspCI	CTTAAG	1 cut(s)	1985
MspI	CCGG	5 cut(s)	410, 420, 981, 2866, 3022
MspR9I	CCNGG	6 cut(s)	77, 926, 1305, 1809, 2663, 2866
MunI	CAATTG	3 cut(s)	1457, 2780, 3547
Mva1269I	GAATGC	5 cut(s)	1059, 1104, 1138, 2263, 2386
MvaI	CCWGG	5 cut(s)	77, 926, 1305, 1809, 2663
MvnI	CGCG	2 cut(s)	905, 3291
NciI	CCSGG	1 cut(s)	2866
NcoI	CCATGG	2 cut(s)	2613, 2698
NdeI	CATATG	2 cut(s)	1903, 2028
NlaIV	GGNNCC	6 cut(s)	67, 1405, 2473, 2497, 3203, 3219
NmuCI	GTSAC	8 cut(s)	531, 796, 1235, 1607, 1778, 1842, 2081, 2955
NruI	TCGCGA	1 cut(s)	905
NsbI	TGCGCA	1 cut(s)	3098
NspI	RCATGY	4 cut(s)	396, 1014, 2052, 2237
NspV	TTCGAA	2 cut(s)	606, 3557
PaeI	GCATGC	1 cut(s)	2052
PagI	TCATGA	3 cut(s)	834, 1267, 2413
PciI	ACATGT	3 cut(s)	392, 1010, 2233
PciSI	GCTCTTC	1 cut(s)	1366
PctI	GAATGC	5 cut(s)	1059, 1104, 1138, 2263, 2386
PdmI	GAANNNNTTC	4 cut(s)	275, 1647, 1884, 3264
PfoI	TCCNGGA	1 cut(s)	2661
PinAI	ACCGGT	2 cut(s)	409, 419
PkrI	GCNGC	8 cut(s)	177, 332, 2374, 2836, 3112, 3115, 3323, 3487
PleI	GAGTC	4 cut(s)	330, 437, 772, 1806
PpsI	GAGTC	4 cut(s)	330, 437, 772, 1806
PpuMI	RGGWCCY	2 cut(s)	66, 1403
PscI	ACATGT	3 cut(s)	392, 1010, 2233
PshBI	ATTAAT	2 cut(s)	251, 2931
PsiI	TTATAA	2 cut(s)	3434, 3513
Psp124BI	GAGCTC	2 cut(s)	1361, 2986
Psp5II	RGGWCCY	2 cut(s)	66, 1403
Psp6I	CCWGG	5 cut(s)	75, 924, 1303, 1807, 2661
PspEI	GGTNACC	1 cut(s)	1778
PspFI	CCCAGC	1 cut(s)	2937
PspGI	CCWGG	5 cut(s)	75, 924, 1303, 1807, 2661
PspN4I	GGNNCC	6 cut(s)	67, 1405, 2473, 2497, 3203, 3219
PspPI	GGNCC	9 cut(s)	66, 161, 590, 725, 770, 1403, 2863, 2868, 3202
PspPPI	RGGWCCY	2 cut(s)	66, 1403
PstI	CTGCAG	2 cut(s)	1642, 2101
PstNI	CAGNNNCTG	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	2471
RruI	TCGCGA	1 cut(s)	905
RsaI	GTAC	3 cut(s)	1427, 2542, 3020
RsaNI	GTAC	3 cut(s)	1426, 2541, 3019
RseI	CAYNNNNRTG	8 cut(s)	627, 1210, 1764, 1941, 2327, 2703, 3046, 3405
SacI	GAGCTC	2 cut(s)	1361, 2986
SapI	GCTCTTC	1 cut(s)	1366
SatI	GCNGC	8 cut(s)	176, 331, 2373, 2835, 3111, 3114, 3322, 3486
Sau96I	GGNCC	9 cut(s)	66, 161, 590, 725, 770, 1403, 2863, 2868, 3202
SchI	GAGTC	4 cut(s)	331, 437, 773, 1806
ScrFI	CCNGG	6 cut(s)	77, 926, 1305, 1809, 2663, 2866
SduI	GDGCHC	5 cut(s)	1361, 2433, 2624, 2920, 2986
SfcI	CTRYAG	4 cut(s)	1638, 1671, 1911, 2097
SfuI	TTCGAA	2 cut(s)	606, 3557
SinI	GGWCC	4 cut(s)	66, 725, 1403, 2868
SmiMI	CAYNNNNRTG	8 cut(s)	627, 1210, 1764, 1941, 2327, 2703, 3046, 3405
SmlI	CTYRAG	3 cut(s)	337, 1985, 2825
SmoI	CTYRAG	3 cut(s)	337, 1985, 2825
SpeI	ACTAGT	2 cut(s)	470, 1522
SphI	GCATGC	1 cut(s)	2052
SsiI	CCGC	5 cut(s)	123, 1924, 2149, 2772, 3181
SspI	AATATT	2 cut(s)	1163, 1564
SspMI	CTAG	8 cut(s)	33, 471, 1523, 2241, 2274, 2385, 2634, 3387
SstI	GAGCTC	2 cut(s)	1361, 2986
StyD4I	CCNGG	6 cut(s)	75, 924, 1303, 1807, 2661, 2864
StyI	CCWWGG	6 cut(s)	945, 2613, 2698, 2894, 3213, 3426
TaiI	ACGT	2 cut(s)	3175, 3376
TaqI	TCGA	5 cut(s)	606, 2118, 2744, 3225, 3557
TaqII	GACCGA	1 cut(s)	1496
TatI	WGTACW	1 cut(s)	1425
TscAI	CASTG	8 cut(s)	540, 696, 1158, 2101, 2118, 2217, 2542, 3053
TseFI	GTSAC	8 cut(s)	531, 796, 1235, 1607, 1778, 1842, 2081, 2955
TseI	GCWGC	8 cut(s)	175, 330, 2372, 2834, 3110, 3113, 3321, 3485
Tsp45I	GTSAC	8 cut(s)	531, 796, 1235, 1607, 1778, 1842, 2081, 2955
TspGWI	ACGGA	1 cut(s)	843
TspRI	CASTG	8 cut(s)	540, 696, 1158, 2101, 2118, 2217, 2542, 3053
Vha464I	CTTAAG	1 cut(s)	1985
VneI	GTGCAC	1 cut(s)	2620
VpaK11BI	GGWCC	4 cut(s)	66, 725, 1403, 2868
VspI	ATTAAT	2 cut(s)	251, 2931
XapI	RAATTY	8 cut(s)	358, 613, 743, 1272, 1546, 1621, 1856, 2123
XceI	RCATGY	4 cut(s)	396, 1014, 2052, 2237
XmiI	GTMKAC	2 cut(s)	400, 3169
XmnI	GAANNNNTTC	4 cut(s)	275, 1647, 1884, 3264
XspI	CTAG	8 cut(s)	33, 471, 1523, 2241, 2274, 2385, 2634, 3387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.