Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002113

Physical Location & Seq

Genomic Coordinates Forward (+)

33429824 .. 33438342

Gene Structure 8519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1278400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3564 bp

ATGCCTCAACCTTTCGTTGCGAGCGGATGGACGTACGTCAATGAAGTCGGACAAATGTGCGGTCCGTACATTCAAGAGCAACTGTATGAGGGTTTATCCTCTGGGTTCCTCCCCGATGAGCTTCCTGTGTACCCTCTGGTCAATGGCACCTTGATCGCCCCAGTTCCATTGAAGTACTTCAAGCAGTTTCCTGATCATGTCGCCACCGGGTTCGCGTATCTCTCTATTGGCATCTCAACCGCCGCATCCACACCCACATCCACCGATTCTTTTCCATCTTCTCACGGCGGCGATTTGCCTATCCGCGACACACCTGCTCCTGGACCGACACCTTCACCTGCTCCTGTTGTTTATCCTGGTTCCCAGTTCAATTCTGCTTTCCATGCCAATTCCAATCAGCCCATGTCACTGCCAAATGAAGAGTCTTGTTGGTTGTATGTGGATGGTGAAGGGCACAAACGCGGGCCGCATACTCTTTATGAATTATACTCGTGGTATCGATATGGATATCTTCAGGATTCGGTCATGATTTATCATGTTGAGAATAAGTGTGCGCCCTTCACCCTATTATCTGTTGCAAATGCTTGGAAACCTGGAACTGAAACTGTCGCCAACTCTGATGCCAAAAGCAATGGCACTGGGTCTTCTGTAAGCTTTATATCTGAAATTTCTGAGGGAGTTTCTAGCCAACTGCACCATGGAATTTTGAAGGCAGCTCGCAGGGTTGTCTTAGATGAGATTATCAGCAATGTCATTAATGAGTTTTTTACCACAAAAAAAAATCAAAGGGTTAATCAGGCCGTGAAGGCTTGTTCCTCGTATAGCAAAATGTCTGAGATTGCTGGAGATATGAAGAACTGTACTGCTGTTTTGTGTGAGGCTGCAGCTTCCGACTCTGTTGCTGATGAGACATGTATCAATCAAGATTACAGCGAACCTCCACCAAGCACGAAATCTGTTGGAAGCATTGAAAACTTTTGGGAGTCGTATGCAGTTGTTTGTAGAATGCTTTTTGATTATTGTATGCAAGTCATGTGGAATGCTGTTTTCTATGATTCAGTGGCAGAGTACTCCTCTTCTTGGAGGAGGAGGAAACTTTGGTCTGGTTCTCCAGTGTGGAGGATACCTTCTAGTGAAGATGCTGAGAAGATTGATAAGTTACCTCATGAAGCTTTACTACCCGGGCAAGATTCTGATGCTTATGATGGTGATTACCCGCCTGGTTTTGAAGTCATGGCAAAGGAATTAGTTGATCATGCACATCCATCAATTATCTCTTCATTGGATCTTAATGGAGGAAATTCATCTAAACAGAAAAGTCCCTCATATGAAGACATGAACTGCATTGTAGAATATGTAGAAAACGAGCTCCAGTTGTCTGCAAAGAATGCTTTGACTGAGTTTGTTGGATCTTTTGTTGATGAGGAGGTCGGGAAATTAGTTACTTCGTCTAAACAAGAAAATTTAATGAAGGAGAATGTCGGCTCTTCTCAGTGTCCCAGCAATAGCATTGGTGGATCTTCAGACTCATGTGATGAATTGAGGATTTCAAGTACAAAATCTACAGAGATGAATCCATCTGATGTATCCCCCCAATCTCCATCGCAAGTAGCACAGCCTGTTGATCATTCTGTACCTGAAATTCAGATGTCCAATTTGTTGGAAAATGCTTTTAAGGAATTATGTTCTCATGTAGATGATATGTCTGTTGACCAAGACATAAATGAGCCATTGCCCCCTGGACTTGTAGACAAAGCTAAAGCTGTTGTGCCATCACACACTTGCAAATTCCGACCTTCAAAGTCAGATGAATGTATTCCTAAGATTGGAGAATATACTGCCACAGCAATGTGCCGGAAAAAACTACATGATTATGTCATTAGAGATTGGAAATCATTGTTTATTGACTGTTCTCTTCAACAGTTTCTTGCATCATGGCACACTTCAAAGAAGACCCATGCTTATAAGGAAAAAGCATTTACTAGGAATAAAGACCATCTCGAAAAACATGAGAAAGAATCAAAGCATTGTGACAATTCTGGCACCGCAGGACTTCCTCCAATGATTGGTAAATATACGTATCACCGCAAGAAGTTGTTGCGGAAAAAGTCAGGGTCTTCACCGTCTGTAACGTTAGGTGATACTGGGTTACAGAATGAAATAGTGGAAAAGTCAAAGAAATTACATGTTACTGGAGATGTGCCTGAGAAATCAGAGCTAAAAATTGCTACTGTGATTCCTAAGAAGAGAAGACAATGCAAATCCCAAACTGAATCGCATGTTGGATCCCCATATTTGCAAGCTGGAGATGTGCCTGAGAAAACAGAACTAAAATTTTCTACTGTGATTCCTAAGAAGCAAAGACAAAGTAAATCCCAAACTGAATTGTATGGTGGCACCATGTCTTTGCAAGCTGGAGGTATGCCTGAGAAAGCAGAACTAAAAATTGCTTCCGTGATTCCTAAGAAGAGAAGCCAAAGCAAACCCCAAACTGAATCGTCTGTTGGCGCCACATCATTGCAAGCCATTGCTAAGAATTCTAGTAGTAGCAAACTATTGAAGGTTTCCCATGCAGTGAAAAGTAGCAAGCCCATGGAAGGCACTCCTAAACCTAGTAAAAAGATGGTTTCAGCTCACGAAGGGGACCACAATAATGTTGAGAAAGTTGTGAATAGCAATGGTCATGATGTTAGGCTTATAGGAGAGCCTTTAACTAAGCCATCAAAGCTGAAAAGGTATCGCGCAATGGATGATTTGAAATTGTCATGTCCCGAAAAGATCTTGAAAGTAGCCAATGGTGCTCCCAAGAAAGCAGCATGTAAGCCAGTTGCAGCTAGAAATATACAGTCCGGTAAATCCAAGAAACTAAATCCTTGCCCTAAATCTTCTGGATGCGCCCGGGCGTCCATTAATGGCTGGGAATGGCATAGATGGTCACAAAACGCAAGTCCTGCTGAAAGAGCCCGTGTTAGGGGAATTAAATATGTTAATGCTGAGTATCAACGTTCTGATATTAATACATCACAGTGGTCAAATGGCAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAGATGCGCAATCTTGCTGCTGCTGCTGATGGGGCTGACCTTCTGAAAGCTACTCAATTAAAGGCGAGGAAAAAGCTTCTACAATTCCAGAGAAGCAAGATACATGATTGGGGTCTTGTTGCATTGGAGCCAATTGAGGCAGAAGACTTTGTTATTGAATATGTTGGAGAACTGATTCGTCCCAGGATATCTGATATCCGTGAGCGTCATTACGAGAAGATAGGAATTGGCAGCAGTTATCTTTTTAGGCTTGATGATGGTTATGTGGTTGATGCTACAAAACGTGGAGGAGTTGCTAGATTTATAAACCATTCTTGTGAGCCTAACTGCTACACCAAAGTTATCAGTGTTGATGGTCACAAACGAATCTTCATTTACGCAAAACGGCATATAGCTGTTGGTGAAGAAATTACTTACAATTATAAGTTTCCTTTGGAGGAGAAGAAGATTCCTTGCAACTGTGGTTCGAAAAAGTGTCGTGGATCTTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009909 GO:0009987 GO:0010228 GO:0010452 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0051568 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

1188

Amino Acids

131.15

Weight (kDa)

8.66

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GYF	PF02213	144 - 187	1.9e-07	GYF domain
SET	PF00856	1060 - 1165	1.9e-27	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400
fragaria_vesca	FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810
malus_domestica	MD02G1278400.v1.1 MD07G1046400.v1.1 MD07G1046500.v1.1
prunus_persica	Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1
pyrus_communis	pycom02g23860
rosa_chinensis	RchiOBHm_Chr7g0217731
rosa_laevigata	RLG00000002444
rosa_multiflora	Rmu_co8471317.1_g000001 Rmu_sc0000202.1_g000011
rosa_roxburghii	Rroxscaffold_3G00241740
rosa_rugosa	Rorug07G0170800 Rorug07G0170800
rosa_samantha	Rh7AG311300 Rh7BG303200 Rh7CG330300 Rh7DG311100
rosa_wichuraiana	Rw7G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1965, 3374, 3492
AarI	CACCTGC	2 cut(s)	322, 346
Acc16I	TGCGCA	1 cut(s)	3077
Acc36I	ACCTGC	2 cut(s)	322, 346
AccB1I	GGYRCC	4 cut(s)	146, 2042, 2396, 2507
AccB7I	CCANNNNNTGG	1 cut(s)	2066
AccBSI	CCGCTC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	1749
AccII	CGCG	4 cut(s)	215, 306, 462, 2742
AclI	AACGTT	2 cut(s)	2132, 3004
AclWI	GGATC	6 cut(s)	1293, 1417, 1525, 2280, 2293, 3559
AcsI	RAATTY	8 cut(s)	666, 702, 1300, 1462, 1641, 1787, 2333, 2536
AcuI	CTGAAG	2 cut(s)	497, 1506
AcyI	GRCGYC	2 cut(s)	2508, 2903
AfaI	GTAC	8 cut(s)	35, 68, 131, 176, 862, 1070, 1555, 1635
AfiI	CCNNNNNNNGG	7 cut(s)	320, 1080, 1826, 2066, 2597, 2970, 2971
AflIII	ACRYGT	2 cut(s)	911, 2185
AjnI	CCWGG	6 cut(s)	319, 355, 592, 1219, 1738, 3251
AjuI	GAANNNNNNNTTGG	4 cut(s)	2265, 2297, 2487, 2519
Alw21I	GWGCWC	2 cut(s)	1371, 2803
Alw26I	GTCTC	1 cut(s)	902
AlwI	GGATC	6 cut(s)	1293, 1417, 1525, 2280, 2293, 3559
Ama87I	CYCGRG	2 cut(s)	1181, 2898
AoxI	GGCC	2 cut(s)	464, 798
ApeKI	GCWGC	9 cut(s)	713, 881, 884, 2813, 2831, 3086, 3089, 3092, 3300
ApoI	RAATTY	8 cut(s)	666, 702, 1300, 1462, 1641, 1787, 2333, 2536
ArsI	GACNNNNNNTTYG	6 cut(s)	46, 78, 407, 439, 2932, 2964
AseI	ATTAAT	3 cut(s)	756, 2910, 3015
Asp700I	GAANNNNTTC	3 cut(s)	176, 1815, 3243
AspLEI	GCGC	5 cut(s)	556, 2510, 2744, 2897, 3078
AspS9I	GGNCC	4 cut(s)	62, 323, 464, 2644
AsuC2I	CCSGG	5 cut(s)	208, 1182, 1183, 2899, 2900
AsuHPI	GGTGA	9 cut(s)	327, 458, 553, 1220, 2075, 2112, 2150, 3079, 3482
AsuII	TTCGAA	1 cut(s)	3536
AvaI	CYCGRG	2 cut(s)	1181, 2898
AvaII	GGWCC	3 cut(s)	62, 323, 2644
BaeGI	GKGCMC	1 cut(s)	456
BamHI	GGATCC	1 cut(s)	2285
BanI	GGYRCC	4 cut(s)	146, 2042, 2396, 2507
BanII	GRGCYC	2 cut(s)	1371, 2965
BarI	GAAGNNNNNNTAC	2 cut(s)	1161, 1193
BauI	CACGAG	1 cut(s)	490
BbsI	GAAGAC	6 cut(s)	636, 1338, 1958, 2109, 2257, 3219
Bbv12I	GWGCWC	2 cut(s)	1371, 2803
BbvI	GCAGC	9 cut(s)	725, 868, 896, 2825, 2843, 3073, 3076, 3079, 3312
BceAI	ACGGC	3 cut(s)	301, 785, 3470
BcgI	CGANNNNNNTGC	6 cut(s)	136, 170, 296, 330, 881, 915
BciT130I	CCWGG	6 cut(s)	321, 357, 594, 1221, 1740, 3253
BciVI	GTATCC	2 cut(s)	1116, 1597
BclI	TGATCA	3 cut(s)	193, 1252, 1624
BcnI	CCSGG	5 cut(s)	208, 1182, 1183, 2899, 2900
BcoDI	GTCTC	1 cut(s)	902
BfaI	CTAG	7 cut(s)	684, 1131, 1983, 2541, 2613, 2835, 3366
BfmI	CTRYAG	2 cut(s)	882, 1563
BfoI	RGCGCY	1 cut(s)	2511
BfuAI	ACCTGC	2 cut(s)	322, 346
BfuI	GTATCC	2 cut(s)	1116, 1597
BglI	GCCNNNNNGGC	1 cut(s)	806
BglII	AGATCT	1 cut(s)	2778
BmcAI	AGTACT	2 cut(s)	176, 1070
Bme18I	GGWCC	3 cut(s)	62, 323, 2644
BmeT110I	CYCGRG	2 cut(s)	1181, 2898
BmgT120I	GGNCC	4 cut(s)	62, 323, 464, 2644
BmiI	GGNNCC	9 cut(s)	107, 148, 361, 2044, 2287, 2398, 2509, 2645, 3198
BmrI	ACTGGG	4 cut(s)	155, 358, 648, 2154
BmsI	GCATC	9 cut(s)	240, 254, 610, 1129, 1186, 1940, 2882, 3063, 3331
BmuI	ACTGGG	4 cut(s)	155, 358, 648, 2154
BoxI	GACNNNNGTC	1 cut(s)	35
BpiI	GAAGAC	6 cut(s)	636, 1338, 1958, 2109, 2257, 3219
BplI	GAGNNNNNCTC	2 cut(s)	1058, 1090
BpmI	CTGGAG	6 cut(s)	864, 1095, 1355, 2214, 2325, 2436
Bpu14I	TTCGAA	1 cut(s)	3536
BpuMI	CCSGG	5 cut(s)	208, 1182, 1183, 2899, 2900
Bsa29I	ATCGAT	1 cut(s)	499
BsaAI	YACGTR	1 cut(s)	2079
BsaHI	GRCGYC	2 cut(s)	2508, 2903
BsaJI	CCNNGG	6 cut(s)	697, 1181, 1738, 2592, 2898, 3251
BsaWI	WCCGGW	1 cut(s)	2849
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	7 cut(s)	320, 1080, 1826, 2066, 2597, 2970, 2971
Bse1I	ACTGG	8 cut(s)	161, 364, 643, 1112, 1372, 2149, 2197, 2825
Bse3DI	GCAATG	8 cut(s)	637, 754, 1730, 1854, 2516, 2526, 2683, 2751
BseBI	CCWGG	6 cut(s)	321, 357, 594, 1221, 1740, 3253
BseCI	ATCGAT	1 cut(s)	499
BseDI	CCNNGG	6 cut(s)	697, 1181, 1738, 2592, 2898, 3251
BseGI	GGATG	7 cut(s)	32, 245, 257, 448, 1261, 2755, 2897
BseLI	CCNNNNNNNGG	7 cut(s)	320, 1080, 1826, 2066, 2597, 2970, 2971
BseMI	GCAATG	8 cut(s)	637, 754, 1730, 1854, 2516, 2526, 2683, 2751
BseMII	CTCAG	9 cut(s)	663, 825, 1134, 1389, 1505, 2196, 2307, 2418, 2985
BseNI	ACTGG	8 cut(s)	161, 364, 643, 1112, 1372, 2149, 2197, 2825
BseRI	GAGGAG	6 cut(s)	1063, 1099, 1102, 1439, 3372, 3521
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	9 cut(s)	725, 868, 896, 2825, 2843, 3073, 3076, 3079, 3312
BseYI	CCCAGC	2 cut(s)	1499, 2916
BsgI	GTGCAG	1 cut(s)	677
Bsh1236I	CGCG	4 cut(s)	215, 306, 462, 2742
BshFI	GGCC	2 cut(s)	466, 800
BshNI	GGYRCC	4 cut(s)	146, 2042, 2396, 2507
BshVI	ATCGAT	1 cut(s)	499
BsiHKAI	GWGCWC	2 cut(s)	1371, 2803
BsiHKCI	CYCGRG	2 cut(s)	1181, 2898
BsiSI	CCGG	5 cut(s)	207, 1182, 1855, 2850, 2899
BsiWI	CGTACG	1 cut(s)	33
BslFI	GGGAC	5 cut(s)	1305, 1482, 2657, 2754, 3234
BslI	CCNNNNNNNGG	7 cut(s)	320, 1080, 1826, 2066, 2597, 2970, 2971
BsmAI	GTCTC	1 cut(s)	902
BsmFI	GGGAC	5 cut(s)	1305, 1482, 2657, 2754, 3234
BsmI	GAATGC	3 cut(s)	1011, 1045, 1393
BsnI	GGCC	2 cut(s)	466, 800
BsoBI	CYCGRG	2 cut(s)	1181, 2898
Bsp119I	TTCGAA	1 cut(s)	3536
Bsp1286I	GDGCHC	4 cut(s)	456, 1371, 2803, 2965
Bsp19I	CCATGG	2 cut(s)	697, 2592
BspANI	GGCC	2 cut(s)	466, 800
BspCNI	CTCAG	9 cut(s)	664, 826, 1135, 1390, 1504, 2197, 2308, 2419, 2986
BspDI	ATCGAT	1 cut(s)	499
BspFNI	CGCG	4 cut(s)	215, 306, 462, 2742
BspHI	TCATGA	3 cut(s)	525, 1165, 2683
BspLI	GGNNCC	9 cut(s)	107, 148, 361, 2044, 2287, 2398, 2509, 2645, 3198
BspMAI	CTGCAG	1 cut(s)	886
BspMI	ACCTGC	2 cut(s)	322, 346
BspPI	GGATC	6 cut(s)	1293, 1417, 1525, 2280, 2293, 3559
BspQI	GCTCTTC	1 cut(s)	1492
BspT104I	TTCGAA	1 cut(s)	3536
BspT107I	GGYRCC	4 cut(s)	146, 2042, 2396, 2507
BsrBI	CCGCTC	1 cut(s)	24
BsrDI	GCAATG	8 cut(s)	637, 754, 1730, 1854, 2516, 2526, 2683, 2751
BsrI	ACTGG	8 cut(s)	161, 364, 643, 1112, 1372, 2149, 2197, 2825
BssECI	CCNNGG	6 cut(s)	697, 1181, 1738, 2592, 2898, 3251
BssNI	GRCGYC	2 cut(s)	2508, 2903
BssSI	CACGAG	1 cut(s)	490
BssT1I	CCWWGG	2 cut(s)	697, 2592
Bst2BI	CACGAG	1 cut(s)	490
Bst2UI	CCWGG	6 cut(s)	321, 357, 594, 1221, 1740, 3253
Bst6I	CTCTTC	7 cut(s)	414, 1081, 1282, 1492, 1920, 2240, 2462
BstACI	GRCGYC	2 cut(s)	2508, 2903
BstAPI	GCANNNNNTGC	2 cut(s)	1388, 2951
BstBAI	YACGTR	1 cut(s)	2079
BstBI	TTCGAA	1 cut(s)	3536
BstC8I	GCNNGC	7 cut(s)	22, 464, 718, 2301, 2412, 2523, 2588
BstDSI	CCRYGG	2 cut(s)	697, 2592
BstF5I	GGATG	7 cut(s)	32, 245, 257, 448, 1261, 2755, 2897
BstFNI	CGCG	4 cut(s)	215, 306, 462, 2742
BstH2I	RGCGCY	1 cut(s)	2511
BstHHI	GCGC	5 cut(s)	556, 2510, 2744, 2897, 3078
BstMAI	GTCTC	1 cut(s)	902
BstMWI	GCNNNNNNNGC	9 cut(s)	383, 806, 1388, 2725, 2798, 2951, 2960, 3092, 3101
BstNI	CCWGG	6 cut(s)	321, 357, 594, 1221, 1740, 3253
BstNSI	RCATGY	4 cut(s)	915, 2189, 2282, 2820
BstPAI	GACNNNNGTC	1 cut(s)	35
BstSFI	CTRYAG	2 cut(s)	882, 1563
BstSLI	GKGCMC	1 cut(s)	456
BstSNI	TACGTA	1 cut(s)	2079
BstUI	CGCG	4 cut(s)	215, 306, 462, 2742
BstV1I	GCAGC	9 cut(s)	725, 868, 896, 2825, 2843, 3073, 3076, 3079, 3312
BstV2I	GAAGAC	6 cut(s)	636, 1338, 1958, 2109, 2257, 3219
BstX2I	RGATCY	6 cut(s)	1285, 1409, 1517, 2285, 2778, 3551
BstXI	CCANNNNNNTGG	1 cut(s)	1660
BstYI	RGATCY	6 cut(s)	1285, 1409, 1517, 2285, 2778, 3551
Bsu15I	ATCGAT	1 cut(s)	499
BsuI	GTATCC	2 cut(s)	1116, 1597
BsuRI	GGCC	2 cut(s)	466, 800
BsuTUI	ATCGAT	1 cut(s)	499
BtgI	CCRYGG	2 cut(s)	697, 2592
BtgZI	GCGATG	1 cut(s)	1587
BtsCI	GGATG	7 cut(s)	32, 245, 257, 448, 1261, 2755, 2897
BtsI	GCAGTG	2 cut(s)	407, 2580
BtsIMutI	CAGTG	8 cut(s)	407, 636, 1065, 1119, 1499, 2580, 3032, 3421
BveI	ACCTGC	2 cut(s)	322, 346
Cac8I	GCNNGC	7 cut(s)	22, 464, 718, 2301, 2412, 2523, 2588
CciI	TCATGA	3 cut(s)	525, 1165, 2683
CfoI	GCGC	5 cut(s)	556, 2510, 2744, 2897, 3078
Cfr13I	GGNCC	4 cut(s)	62, 323, 464, 2644
Cfr9I	CCCGGG	2 cut(s)	1181, 2898
ClaI	ATCGAT	1 cut(s)	499
CpoI	CGGWCCG	1 cut(s)	62
CseI	GACGC	2 cut(s)	2892, 3263
Csp6I	GTAC	8 cut(s)	34, 67, 130, 175, 861, 1069, 1554, 1634
CspCI	CAANNNNNGTGG	2 cut(s)	1016, 1051
CspI	CGGWCCG	1 cut(s)	62
CviQI	GTAC	8 cut(s)	34, 67, 130, 175, 861, 1069, 1554, 1634
DinI	GGCGCC	1 cut(s)	2509
Eam1104I	CTCTTC	7 cut(s)	414, 1081, 1282, 1492, 1920, 2240, 2462
EarI	CTCTTC	7 cut(s)	414, 1081, 1282, 1492, 1920, 2240, 2462
Ecl136II	GAGCTC	1 cut(s)	1369
Eco105I	TACGTA	1 cut(s)	2079
Eco130I	CCWWGG	2 cut(s)	697, 2592
Eco24I	GRGCYC	2 cut(s)	1371, 2965
Eco32I	GATATC	3 cut(s)	509, 3258, 3265
Eco47I	GGWCC	3 cut(s)	62, 323, 2644
Eco53kI	GAGCTC	1 cut(s)	1369
Eco57I	CTGAAG	2 cut(s)	497, 1506
Eco88I	CYCGRG	2 cut(s)	1181, 2898
EcoICRI	GAGCTC	1 cut(s)	1369
EcoRI	GAATTC	1 cut(s)	2536
EcoRII	CCWGG	6 cut(s)	319, 355, 592, 1219, 1738, 3251
EcoRV	GATATC	3 cut(s)	509, 3258, 3265
EcoT14I	CCWWGG	2 cut(s)	697, 2592
EcoT38I	GRGCYC	2 cut(s)	1371, 2965
EgeI	GGCGCC	1 cut(s)	2509
EheI	GGCGCC	1 cut(s)	2509
ErhI	CCWWGG	2 cut(s)	697, 2592
FaqI	GGGAC	5 cut(s)	1305, 1482, 2657, 2754, 3234
FauI	CCCGC	2 cut(s)	455, 1224
FauNDI	CATATG	1 cut(s)	1327
FbaI	TGATCA	3 cut(s)	193, 1252, 1624
FblI	GTMKAC	1 cut(s)	1749
FokI	GGATG	7 cut(s)	39, 232, 244, 455, 1248, 2762, 2904
FriOI	GRGCYC	2 cut(s)	1371, 2965
FspBI	CTAG	7 cut(s)	684, 1131, 1983, 2541, 2613, 2835, 3366
FspI	TGCGCA	1 cut(s)	3077
GlaI	GCGC	5 cut(s)	555, 2509, 2743, 2896, 3077
GsaI	CCCAGC	2 cut(s)	1503, 2920
GsuI	CTGGAG	6 cut(s)	864, 1095, 1355, 2214, 2325, 2436
HaeII	RGCGCY	1 cut(s)	2511
HaeIII	GGCC	2 cut(s)	466, 800
HapII	CCGG	5 cut(s)	207, 1182, 1855, 2850, 2899
HgaI	GACGC	2 cut(s)	2892, 3263
HhaI	GCGC	5 cut(s)	556, 2510, 2744, 2897, 3078
Hin1I	GRCGYC	2 cut(s)	2508, 2903
Hin6I	GCGC	5 cut(s)	554, 2508, 2742, 2895, 3076
HinP1I	GCGC	5 cut(s)	554, 2508, 2742, 2895, 3076
HincII	GTYRAC	1 cut(s)	1711
HindII	GTYRAC	1 cut(s)	1711
HindIII	AAGCTT	3 cut(s)	652, 1170, 3143
HpaII	CCGG	5 cut(s)	207, 1182, 1855, 2850, 2899
HphI	GGTGA	9 cut(s)	327, 458, 553, 1220, 2075, 2112, 2150, 3079, 3482
Hpy166II	GTNNAC	3 cut(s)	130, 1711, 1750
Hpy8I	GTNNAC	3 cut(s)	130, 1711, 1750
HpyCH4IV	ACGT	6 cut(s)	32, 36, 2078, 2132, 3004, 3352
HpyF10VI	GCNNNNNNNGC	9 cut(s)	383, 806, 1388, 2725, 2798, 2951, 2960, 3092, 3101
HpySE526I	ACGT	6 cut(s)	32, 36, 2078, 2132, 3004, 3352
Hsp92I	GRCGYC	2 cut(s)	2508, 2903
HspAI	GCGC	5 cut(s)	554, 2508, 2742, 2895, 3076
KasI	GGCGCC	1 cut(s)	2507
Ksp22I	TGATCA	3 cut(s)	193, 1252, 1624
LguI	GCTCTTC	1 cut(s)	1492
LmnI	GCTCC	5 cut(s)	322, 346, 1374, 2806, 3196
Lsp1109I	GCAGC	9 cut(s)	725, 868, 896, 2825, 2843, 3073, 3076, 3079, 3312
LweI	GCATC	9 cut(s)	240, 254, 610, 1129, 1186, 1940, 2882, 3063, 3331
MaeI	CTAG	7 cut(s)	684, 1131, 1983, 2541, 2613, 2835, 3366
MaeII	ACGT	6 cut(s)	32, 36, 2078, 2132, 3004, 3352
MaeIII	GTNAC	9 cut(s)	405, 1158, 1441, 2030, 2128, 2148, 2188, 2934, 3425
MbiI	CCGCTC	1 cut(s)	24
MfeI	CAATTG	1 cut(s)	3201
MflI	RGATCY	6 cut(s)	1285, 1409, 1517, 2285, 2778, 3551
MhlI	GDGCHC	4 cut(s)	456, 1371, 2803, 2965
Mly113I	GGCGCC	1 cut(s)	2508
MlyI	GAGTC	4 cut(s)	431, 887, 992, 1520
MmeI	TCCRAC	8 cut(s)	28, 915, 940, 1387, 1641, 1816, 2263, 3214
MroXI	GAANNNNTTC	3 cut(s)	176, 1815, 3243
MslI	CAYNNNNRTG	6 cut(s)	1695, 1847, 1872, 2652, 3025, 3384
MspI	CCGG	5 cut(s)	207, 1182, 1855, 2850, 2899
MunI	CAATTG	1 cut(s)	3201
Mva1269I	GAATGC	3 cut(s)	1011, 1045, 1393
MvaI	CCWGG	6 cut(s)	321, 357, 594, 1221, 1740, 3253
MvnI	CGCG	4 cut(s)	215, 306, 462, 2742
MwoI	GCNNNNNNNGC	9 cut(s)	383, 806, 1388, 2725, 2798, 2951, 2960, 3092, 3101
NarI	GGCGCC	1 cut(s)	2508
NciI	CCSGG	5 cut(s)	208, 1182, 1183, 2899, 2900
NcoI	CCATGG	2 cut(s)	697, 2592
NdeI	CATATG	1 cut(s)	1327
NlaIV	GGNNCC	9 cut(s)	107, 148, 361, 2044, 2287, 2398, 2509, 2645, 3198
NmuCI	GTSAC	4 cut(s)	405, 2030, 2934, 3425
NsbI	TGCGCA	1 cut(s)	3077
NspI	RCATGY	4 cut(s)	915, 2189, 2282, 2820
NspV	TTCGAA	1 cut(s)	3536
PagI	TCATGA	3 cut(s)	525, 1165, 2683
PaqCI	CACCTGC	2 cut(s)	322, 346
PciI	ACATGT	2 cut(s)	911, 2185
PciSI	GCTCTTC	1 cut(s)	1492
PctI	GAATGC	3 cut(s)	1011, 1045, 1393
PdmI	GAANNNNTTC	3 cut(s)	176, 1815, 3243
Pfl23II	CGTACG	1 cut(s)	33
PflMI	CCANNNNNTGG	1 cut(s)	2066
PfoI	TCCNGGA	1 cut(s)	319
PleI	GAGTC	4 cut(s)	430, 887, 991, 1520
PluTI	GGCGCC	1 cut(s)	2511
PpsI	GAGTC	4 cut(s)	430, 887, 991, 1520
Ppu21I	YACGTR	1 cut(s)	2079
PscI	ACATGT	2 cut(s)	911, 2185
PshAI	GACNNNNGTC	1 cut(s)	35
PshBI	ATTAAT	3 cut(s)	756, 2910, 3015
PsiI	TTATAA	3 cut(s)	1965, 3374, 3492
Psp124BI	GAGCTC	1 cut(s)	1371
Psp1406I	AACGTT	2 cut(s)	2132, 3004
Psp6I	CCWGG	6 cut(s)	319, 355, 592, 1219, 1738, 3251
PspFI	CCCAGC	2 cut(s)	1499, 2916
PspGI	CCWGG	6 cut(s)	319, 355, 592, 1219, 1738, 3251
PspLI	CGTACG	1 cut(s)	33
PspN4I	GGNNCC	9 cut(s)	107, 148, 361, 2044, 2287, 2398, 2509, 2645, 3198
PspPI	GGNCC	4 cut(s)	62, 323, 464, 2644
PstI	CTGCAG	1 cut(s)	886
PsuI	RGATCY	6 cut(s)	1285, 1409, 1517, 2285, 2778, 3551
RsaI	GTAC	8 cut(s)	35, 68, 131, 176, 862, 1070, 1555, 1635
RsaNI	GTAC	8 cut(s)	34, 67, 130, 175, 861, 1069, 1554, 1634
RseI	CAYNNNNRTG	6 cut(s)	1695, 1847, 1872, 2652, 3025, 3384
Rsr2I	CGGWCCG	1 cut(s)	62
RsrII	CGGWCCG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	1371
SapI	GCTCTTC	1 cut(s)	1492
Sau96I	GGNCC	4 cut(s)	62, 323, 464, 2644
ScaI	AGTACT	2 cut(s)	176, 1070
SchI	GAGTC	4 cut(s)	431, 887, 992, 1520
SduI	GDGCHC	4 cut(s)	456, 1371, 2803, 2965
SfaNI	GCATC	9 cut(s)	240, 254, 610, 1129, 1186, 1940, 2882, 3063, 3331
SfcI	CTRYAG	2 cut(s)	882, 1563
SfoI	GGCGCC	1 cut(s)	2509
SfuI	TTCGAA	1 cut(s)	3536
SinI	GGWCC	3 cut(s)	62, 323, 2644
SmaI	CCCGGG	2 cut(s)	1183, 2900
SmiMI	CAYNNNNRTG	6 cut(s)	1695, 1847, 1872, 2652, 3025, 3384
SnaBI	TACGTA	1 cut(s)	2079
SrfI	GCCCGGGC	1 cut(s)	2900
SspDI	GGCGCC	1 cut(s)	2507
SspMI	CTAG	7 cut(s)	684, 1131, 1983, 2541, 2613, 2835, 3366
SstI	GAGCTC	1 cut(s)	1371
StyI	CCWWGG	2 cut(s)	697, 2592
TaiI	ACGT	6 cut(s)	35, 39, 2081, 2135, 3007, 3355
TaqI	TCGA	3 cut(s)	499, 2001, 3536
TaqII	GACCGA	2 cut(s)	340, 511
TatI	WGTACW	4 cut(s)	174, 860, 1068, 1553
TauI	GCSGC	3 cut(s)	245, 291, 469
TscAI	CASTG	8 cut(s)	414, 643, 1065, 1119, 1499, 2580, 3032, 3421
TseFI	GTSAC	4 cut(s)	405, 2030, 2934, 3425
TseI	GCWGC	9 cut(s)	713, 881, 884, 2813, 2831, 3086, 3089, 3092, 3300
Tsp45I	GTSAC	4 cut(s)	405, 2030, 2934, 3425
TspGWI	ACGGA	3 cut(s)	54, 2443, 3257
TspMI	CCCGGG	2 cut(s)	1181, 2898
TspRI	CASTG	8 cut(s)	414, 643, 1065, 1119, 1499, 2580, 3032, 3421
Van91I	CCANNNNNTGG	1 cut(s)	2066
VpaK11BI	GGWCC	3 cut(s)	62, 323, 2644
VspI	ATTAAT	3 cut(s)	756, 2910, 3015
XapI	RAATTY	8 cut(s)	666, 702, 1300, 1462, 1641, 1787, 2333, 2536
XceI	RCATGY	4 cut(s)	915, 2189, 2282, 2820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	695
XmaI	CCCGGG	2 cut(s)	1181, 2898
XmiI	GTMKAC	1 cut(s)	1749
XmnI	GAANNNNTTC	3 cut(s)	176, 1815, 3243
XspI	CTAG	7 cut(s)	684, 1131, 1983, 2541, 2613, 2835, 3366
ZrmI	AGTACT	2 cut(s)	176, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.