Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002113

Physical Location & Seq

Genomic Coordinates Reverse (-)

34978638 .. 34985084

Gene Structure 6447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG311300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3588 bp

ATGGAGATGAGCTGCCAGTCAAATGGCAATTCTAGTGATATTCAACAGCTCTGTAACTCTGGGGGGACCCCATACCAGGACAAGACTTACTCGGGCTATATGCCTCCTCCTCCTCCTTTTGTGAGCGGATGGATGTATGTTAATGAACAAGGACAAATGTGCGGCCCGTATATTCAGCAGCAGTTATTTGAAGGTTTATCTACTGGTTTTTTGCCAGATGAGCTTCCTGTATATCCTGTGGTAAATGGGGCATTAATAAACCCAATACCATTGAAGTATTTCAAGCAGTTCCCTGATCATGTTGCTACTGGGTTTGCATATCTGAGTCTGGGCAGCATCTCGAGCACAAGCACGCCTACAAATTCTCTTAAATCTTGCAATGGGGATTTGGCTACATGTAGTATACCTACACCGGTTGCTACCGGTTATCCTGATTTACAGTATGACTCCACTTCACAGGCCAGCTACGACACTAGTGTTTCCAATAAGCTGATATTGAACTCCAAAGCACCTAATCAAGTTACTTCAAATCAGTCACTGTCAAGTAAAGATTCTTGCTGGTTGTATGAGGATGAGGTAGGGAAGAGAAATGGGCCATATTCTCTTTTCGAATTAAATTCTTGGCATCGATATGGATATCTTCGGGATTCACTGACGATTTATCATGTCAAGAACAAGTGTAAACCTTTCACGCTGTCATCGGTTCTCAATTCATGGAAACTTGATGGACCTGAAACCATCACCAAATTTGATGCCAAATGTAATGAGTCTGGCCCATTGGTAAGCATTATATCTGAAGTCACAGAGGGAGTTTCTTCCCAACTGCACTATGGAATTATGAAATCAGCTCGTAGAGTTGTTTTAGATGAGATAATCAGCAATGTGATTGCTGAGTTTGTTACCACCACGAAAGCTCAGAGACTTAACCAGGATATGAAGACCTGGTCCTTGGATGCAAAAAAGTCTGAAATTGACTGTGAGGCTGGAGTTTCCGACTATGTTGCTGAAAGGACATGTATCAATCAAGATTTGCCTTCACCAATGACTAAATCTGTTGGAAGCATTCAGAACTTTTGGGATTCTTATGCAGTTGTTTGTAGAATGCTCTTTGATTATTGCATGGAAGTCACGTGGAATGCTGTCTTCTATGATTCAGTGGCAGAATATTCATCTGCTTGGAGGAGAAGGAAACTATGGACTGGCTCTCCATTGTTGTGGAGACCTCCTAAAAGATGTGGTGACTGGGTGGAAAAGATCACAAAATTACCTCATGAAATTTTATCTGATAATGATGATGATCGTCCCCCTGGTTTTGAACTGTTGGGAGCTGAGTTAGGGCGTCATGCTCAGCCATCATTGAGCTCTTCATTGGTTCTAATGGAGGAAAAACCACCTAAACAGATAGGTCCCTCATACGAAGACATGAAGTACATTGTAGAGCATATAGAAAATGAACTTCAATTGTCTGCAAAGAGTTCCTTGACCGAGTATGTTGGATGCTTTGTTGATGAGGAAGTGAGTAAACTAGTTAATTCGTCCACAGAAGAGAATTCAATAAAGGAGAATATTGACTGTTCCCCAAGGAGCATTGGTGGCTCATCTGACCCATGTGACAATTTGAGGACTTCAAATAACACATCTGCAGAAATTATTCTGTCTGAGATATCCCTTACTCCAGAAGTAGAAAAACCCTTCCATAGTTCTTTTTCTGAAAATCGTATGTCTAATTTTCTGGCAAGTGCTTTTAAGGAAGTCTGTTCTCATGTTGATGATCTTGATGGTGACCAAGAAGTAAATGAACCATCACCCCCTGGACTCATAGCCAATGTTAAAACTCTTGGACAGTCACCTATTTGCAAATTCCGACCTTCAAGGTCAGAAGAATGTATTCCTAAGATTGGAGCATATGTTGCTACAGCAATGTTGCGGAAGAAACTCCATGATGATGTTATTGGAGAATGGAAATCATCATTTATTGATCTGGCTCTTAATAAGTTTTTTGCATCATGGCGAACTTCAAGGAAGAACCATGTCCGTAATGAGGAAAAAGCATGCAACACCAATAAAGAAGAATTAAAGCATTGTCACAGTTCTATCACTGCAGAAGTATCTCCAATGATCGATGAATATAAATATCAGCGCAAGAGGTTGCGGAAAAAGTCAGGTTCTTCTGGACTTGTAACTGTAATTGATACTGGGTTAAAGAGTGAAACAGTGGAAAAGGCAAAGAAGCTACACGTTGCTAGAAATGTGCCGAAGAATGCTACTGTGATTCCTAGAAACAGATGTCTAAGCAAACCCCAAACTGAATCATCTGTTGATGCCATATCTGTGAAAGTTAATTCTAAAAGGCTTTCATCAACTGATAAGTCAGCAGCTAAGAATGCTAGTAGTCGGAAGCCATTGAAGGGTTCTCATGAACAAAGTTGTAAGCCCATTGACGATGTTATTGATGGCATCAGCTCAGTTAGGGGATCCCAAACTGAATTATCTGTTGGTGCCATTGCCTTGCAAGCCATTGATAAGAGGTGTTCATCCACTGATACATTAGTAGCTAATAATGCTATTAGTCGGAAACGATTGAAGGTTTCTCATGCAGTTAAAGGTAGTGAACCCATGGAGTGCACTCCTAAACCTAGTAAAAGGATGGTTTCAGCTCATGTCCAGGATGACAATGATATTGAGAATGTTGTAAATAGCCATGGTCGAGATGATCGGCTTAAAGGAGAGCCTTTAACTAAGGTGTCGAAGCTGAAAAGGGAGCGTCCAGTTGGCGGTTCACAATTGCCACATCCCAAAAAGGTCTTGAAAGTAGCCAATGATGTTCTCAAGCAAGCAGCAAATATCCCGGTCGCAGTAAGAAAGGCCCGGTCCAGTAAGTCAAAGACGTCAAATCCTTGCCCTAAATCTGATGGATGTGCCCGTGCTTCAATTAATGGCTGGGAATGGCATAGATGGTCACTAAATGCAACTCCTGCTGAAAGAGCTCGTGGTAGGGGAATCAAATATGTTAATGCCCAGTACCGGACTTCTGACACTAATACATCACAGTGGTCAAATGGCAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAGATGCGCAGTCTTCTTGCCGCTGCTGAGGGTGCTGACCTTTTGAAAGCCACTCAATTAAAGGCAAGGAAAAAGCGTCTACGTTTCCAGCGGAGCAAGATACATGATTGGGGTCTTATTGCCTTGGAGCCAATCGAGGCAGAAGACTTTGTTATTGAATATGTTGGAGAATTGATTCGTCCCCAGATATCTGATATACGCGAGCGTCATTACGAGAAGATGGGAATTGGCAGCAGTTATTTGTTTAGGATTGATGATGGTTATGTGGTTGATGCTACAAAACGTGGAGGAATTGCTAGATTCATAAACCATTCTTGTGAGCCTAACTGCTACACCAAGGTTATAAGTGTTGAGGGTGAGAAAAAGATTTTCATTTATGCAAAACGACATATAGCTGCTGGTGAAGAAATTACTTACAATTATAAGTTCCCATTAGAGGAGAAAAAGATTCCATGCAATTGTGGTTCGAAAAGGTGCCGTGGATCATTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009909 GO:0009987 GO:0010228 GO:0010452 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0051568 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

1195

Amino Acids

133.05

Weight (kDa)

8.76

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	1068 - 1173	1.2e-27	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400
fragaria_vesca	FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810
malus_domestica	MD02G1278400.v1.1 MD07G1046400.v1.1 MD07G1046500.v1.1
prunus_persica	Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1
pyrus_communis	pycom02g23860
rosa_chinensis	RchiOBHm_Chr7g0217731
rosa_laevigata	RLG00000002444
rosa_multiflora	Rmu_co8471317.1_g000001 Rmu_sc0000202.1_g000011
rosa_roxburghii	Rroxscaffold_3G00241740
rosa_rugosa	Rorug07G0170800 Rorug07G0170800
rosa_samantha	Rh7AG311300 Rh7BG303200 Rh7CG330300 Rh7DG311100
rosa_wichuraiana	Rw7G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	3437, 3516
AatII	GACGTC	1 cut(s)	2891
Acc16I	TGCGCA	1 cut(s)	3101
AccB1I	GGYRCC	2 cut(s)	2498, 3567
AccBSI	CCGCTC	1 cut(s)	126
AccI	GTMKAC	2 cut(s)	403, 3172
AccII	CGCG	1 cut(s)	3294
AciI	CCGC	7 cut(s)	126, 162, 1927, 2152, 2775, 3114, 3184
AclWI	GGATC	3 cut(s)	2469, 2482, 3583
AcsI	RAATTY	6 cut(s)	361, 616, 746, 1275, 1549, 1859
AcuI	CTGAAG	1 cut(s)	816
AcvI	CACGTG	1 cut(s)	1131
AcyI	GRCGYC	2 cut(s)	1339, 2888
AfaI	GTAC	2 cut(s)	1430, 3023
AfiI	CCNNNNNNNGG	7 cut(s)	76, 1898, 2041, 2408, 2774, 3024, 3529
AflIII	ACRYGT	3 cut(s)	395, 1013, 2236
AgeI	ACCGGT	2 cut(s)	412, 422
AhlI	ACTAGT	2 cut(s)	473, 1525
AjnI	CCWGG	6 cut(s)	75, 927, 941, 1306, 1810, 2664
AjuI	GAANNNNNNNTTGG	2 cut(s)	2478, 2510
Alw21I	GWGCWC	4 cut(s)	347, 1364, 2627, 2989
Alw26I	GTCTC	2 cut(s)	913, 1213
Alw44I	GTGCAC	1 cut(s)	2623
AlwI	GGATC	3 cut(s)	2469, 2482, 3583
AlwNI	CAGNNNCTG	1 cut(s)	538
Ama87I	CYCGRG	2 cut(s)	91, 340
AoxI	GGCC	5 cut(s)	163, 459, 593, 772, 2865
ApaLI	GTGCAC	1 cut(s)	2623
ApeKI	GCWGC	8 cut(s)	12, 178, 333, 2375, 2837, 3116, 3324, 3488
ApoI	RAATTY	6 cut(s)	361, 616, 746, 1275, 1549, 1859
AseI	ATTAAT	2 cut(s)	254, 2934
AsiGI	ACCGGT	2 cut(s)	412, 422
Asp700I	GAANNNNTTC	4 cut(s)	278, 1650, 1887, 3267
AspLEI	GCGC	2 cut(s)	2142, 3102
AspS9I	GGNCC	9 cut(s)	66, 164, 593, 728, 773, 945, 1406, 2866, 2871
AsuC2I	CCSGG	2 cut(s)	2849, 2869
AsuHPI	GGTGA	9 cut(s)	733, 1029, 1250, 1793, 1797, 1839, 3103, 3461, 3506
AsuII	TTCGAA	2 cut(s)	609, 3560
AvaI	CYCGRG	2 cut(s)	91, 340
AvaII	GGWCC	5 cut(s)	66, 728, 945, 1406, 2871
BaeGI	GKGCMC	2 cut(s)	2627, 2923
BaeI	ACNNNNGTAYC	2 cut(s)	2535, 2568
BamHI	GGATCC	1 cut(s)	2474
BanI	GGYRCC	2 cut(s)	2498, 3567
BanII	GRGCYC	2 cut(s)	1364, 2989
BauI	CACGAG	1 cut(s)	2988
BbrPI	CACGTG	1 cut(s)	1131
BbsI	GAAGAC	5 cut(s)	944, 1135, 1425, 3098, 3243
Bbv12I	GWGCWC	4 cut(s)	347, 1364, 2627, 2989
BbvCI	CCTCAGC	1 cut(s)	3120
BbvI	GCAGC	7 cut(s)	190, 345, 2387, 2849, 3103, 3336, 3475
BceAI	ACGGC	1 cut(s)	3555
BcgI	CGANNNNNNTGC	2 cut(s)	983, 1017
BciT130I	CCWGG	6 cut(s)	77, 929, 943, 1308, 1812, 2666
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	2 cut(s)	2849, 2869
BcoDI	GTCTC	2 cut(s)	913, 1213
BcuI	ACTAGT	2 cut(s)	473, 1525
BfaI	CTAG	8 cut(s)	33, 474, 1526, 2244, 2277, 2388, 2637, 3390
BfmI	CTRYAG	3 cut(s)	1641, 1914, 2100
BlpI	GCTNAGC	1 cut(s)	1347
Bme1390I	CCNGG	8 cut(s)	77, 929, 943, 1308, 1812, 2666, 2849, 2869
Bme18I	GGWCC	5 cut(s)	66, 728, 945, 1406, 2871
BmeT110I	CYCGRG	2 cut(s)	91, 340
BmgT120I	GGNCC	9 cut(s)	66, 164, 593, 728, 773, 945, 1406, 2866, 2871
BmiI	GGNNCC	7 cut(s)	67, 68, 1408, 2476, 2500, 3222, 3569
BmrFI	CCNGG	8 cut(s)	77, 929, 943, 1308, 1812, 2666, 2849, 2869
BmrI	ACTGGG	4 cut(s)	318, 1252, 2205, 3013
BmuI	ACTGGG	4 cut(s)	318, 1252, 2205, 3013
BpiI	GAAGAC	5 cut(s)	944, 1135, 1425, 3098, 3243
BpmI	CTGGAG	2 cut(s)	1005, 1659
Bpu10I	CCTNAGC	1 cut(s)	3120
Bpu1102I	GCTNAGC	1 cut(s)	1347
Bpu14I	TTCGAA	2 cut(s)	609, 3560
BpuEI	CTTGAG	1 cut(s)	2813
BpuMI	CCSGG	2 cut(s)	2849, 2869
Bsa29I	ATCGAT	2 cut(s)	628, 2121
BsaAI	YACGTR	1 cut(s)	1131
BsaBI	GATNNNNATC	1 cut(s)	1296
BsaHI	GRCGYC	2 cut(s)	1339, 2888
BsaI	GGTCTC	1 cut(s)	1213
BsaJI	CCNNGG	9 cut(s)	948, 1306, 1580, 1810, 2616, 2701, 3216, 3429, 3571
BsaWI	WCCGGW	3 cut(s)	412, 422, 3024
BsaXI	ACNNNNNCTCC	6 cut(s)	1189, 1219, 1576, 1606, 1893, 1923
Bsc4I	CCNNNNNNNGG	7 cut(s)	76, 1898, 2041, 2408, 2774, 3024, 3529
Bse118I	RCCGGY	2 cut(s)	412, 422
Bse1I	ACTGG	9 cut(s)	16, 208, 313, 1204, 1247, 2200, 2768, 2874, 3019
Bse3DI	GCAATG	4 cut(s)	385, 886, 1926, 2502
Bse8I	GATNNNNATC	1 cut(s)	1296
BseBI	CCWGG	6 cut(s)	77, 929, 943, 1308, 1812, 2666
BseCI	ATCGAT	2 cut(s)	628, 2121
BseDI	CCNNGG	9 cut(s)	948, 1306, 1580, 1810, 2616, 2701, 3216, 3429, 3571
BseJI	GATNNNNATC	1 cut(s)	1296
BseLI	CCNNNNNNNGG	7 cut(s)	76, 1898, 2041, 2408, 2774, 3024, 3529
BseMI	GCAATG	4 cut(s)	385, 886, 1926, 2502
BseMII	CTCAG	8 cut(s)	314, 882, 929, 1320, 1361, 1650, 2478, 3111
BseNI	ACTGG	9 cut(s)	16, 208, 313, 1204, 1247, 2200, 2768, 2874, 3019
BseRI	GAGGAG	5 cut(s)	96, 99, 102, 1195, 3545
BseSI	GKGCMC	2 cut(s)	2627, 2923
BseXI	GCAGC	7 cut(s)	190, 345, 2387, 2849, 3103, 3336, 3475
BseYI	CCCAGC	1 cut(s)	2940
BsgI	GTGCAG	1 cut(s)	809
Bsh1236I	CGCG	1 cut(s)	3294
Bsh1285I	CGRYCG	1 cut(s)	2853
BshFI	GGCC	5 cut(s)	165, 461, 595, 774, 2867
BshNI	GGYRCC	2 cut(s)	2498, 3567
BshTI	ACCGGT	2 cut(s)	412, 422
BshVI	ATCGAT	2 cut(s)	628, 2121
BsiEI	CGRYCG	1 cut(s)	2853
BsiHKAI	GWGCWC	4 cut(s)	347, 1364, 2627, 2989
BsiHKCI	CYCGRG	2 cut(s)	91, 340
BsiSI	CCGG	5 cut(s)	413, 423, 2849, 2869, 3025
BslFI	GGGAC	4 cut(s)	79, 1287, 1392, 3258
BslI	CCNNNNNNNGG	7 cut(s)	76, 1898, 2041, 2408, 2774, 3024, 3529
BsmAI	GTCTC	2 cut(s)	913, 1213
BsmFI	GGGAC	4 cut(s)	79, 1287, 1392, 3258
BsmI	GAATGC	5 cut(s)	1062, 1107, 1141, 2266, 2389
BsnI	GGCC	5 cut(s)	165, 461, 595, 774, 2867
Bso31I	GGTCTC	1 cut(s)	1213
BsoBI	CYCGRG	2 cut(s)	91, 340
Bsp119I	TTCGAA	2 cut(s)	609, 3560
Bsp1286I	GDGCHC	5 cut(s)	347, 1364, 2627, 2923, 2989
Bsp143I	GATC	9 cut(s)	295, 1254, 1297, 1771, 1978, 2118, 2474, 2713, 3575
Bsp1720I	GCTNAGC	1 cut(s)	1347
Bsp19I	CCATGG	2 cut(s)	2616, 2701
BspACI	CCGC	7 cut(s)	126, 162, 1927, 2152, 2775, 3114, 3184
BspANI	GGCC	5 cut(s)	165, 461, 595, 774, 2867
BspCNI	CTCAG	8 cut(s)	315, 883, 928, 1321, 1360, 1651, 2477, 3112
BspDI	ATCGAT	2 cut(s)	628, 2121
BspFNI	CGCG	1 cut(s)	3294
BspHI	TCATGA	2 cut(s)	1270, 2416
BspLI	GGNNCC	7 cut(s)	67, 68, 1408, 2476, 2500, 3222, 3569
BspMAI	CTGCAG	2 cut(s)	1645, 2104
BspPI	GGATC	3 cut(s)	2469, 2482, 3583
BspQI	GCTCTTC	1 cut(s)	1369
BspT104I	TTCGAA	2 cut(s)	609, 3560
BspT107I	GGYRCC	2 cut(s)	2498, 3567
BspTNI	GGTCTC	1 cut(s)	1213
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	4 cut(s)	385, 886, 1926, 2502
BsrFI	RCCGGY	2 cut(s)	412, 422
BsrI	ACTGG	9 cut(s)	16, 208, 313, 1204, 1247, 2200, 2768, 2874, 3019
BssAI	RCCGGY	2 cut(s)	412, 422
BssECI	CCNNGG	9 cut(s)	948, 1306, 1580, 1810, 2616, 2701, 3216, 3429, 3571
BssMI	GATC	9 cut(s)	295, 1254, 1297, 1771, 1978, 2118, 2474, 2713, 3575
BssNAI	GTATAC	1 cut(s)	404
BssNI	GRCGYC	2 cut(s)	1339, 2888
BssSI	CACGAG	1 cut(s)	2988
BssT1I	CCWWGG	6 cut(s)	948, 1580, 2616, 2701, 3216, 3429
Bst1107I	GTATAC	1 cut(s)	404
Bst2BI	CACGAG	1 cut(s)	2988
Bst2UI	CCWGG	6 cut(s)	77, 929, 943, 1308, 1812, 2666
Bst6I	CTCTTC	3 cut(s)	578, 1369, 1539
BstACI	GRCGYC	2 cut(s)	1339, 2888
BstAPI	GCANNNNNTGC	2 cut(s)	1910, 2975
BstBAI	YACGTR	1 cut(s)	1131
BstBI	TTCGAA	2 cut(s)	609, 3560
BstC8I	GCNNGC	6 cut(s)	353, 463, 2053, 2514, 2835, 3296
BstDSI	CCRYGG	3 cut(s)	2616, 2701, 3571
BstEII	GGTNACC	1 cut(s)	1781
BstFNI	CGCG	1 cut(s)	3294
BstHHI	GCGC	2 cut(s)	2142, 3102
BstKTI	GATC	9 cut(s)	298, 1257, 1300, 1774, 1981, 2121, 2477, 2716, 3578
BstMAI	GTCTC	2 cut(s)	913, 1213
BstMBI	GATC	9 cut(s)	295, 1254, 1297, 1771, 1978, 2118, 2474, 2713, 3575
BstMCI	CGRYCG	1 cut(s)	2853
BstNI	CCWGG	6 cut(s)	77, 929, 943, 1308, 1812, 2666
BstNSI	RCATGY	3 cut(s)	399, 1017, 2055
BstPI	GGTNACC	1 cut(s)	1781
BstSCI	CCNGG	8 cut(s)	75, 927, 941, 1306, 1810, 2664, 2847, 2867
BstSFI	CTRYAG	3 cut(s)	1641, 1914, 2100
BstSLI	GKGCMC	2 cut(s)	2627, 2923
BstUI	CGCG	1 cut(s)	3294
BstV1I	GCAGC	7 cut(s)	190, 345, 2387, 2849, 3103, 3336, 3475
BstV2I	GAAGAC	5 cut(s)	944, 1135, 1425, 3098, 3243
BstX2I	RGATCY	1 cut(s)	2474
BstXI	CCANNNNNNTGG	2 cut(s)	23, 1215
BstYI	RGATCY	1 cut(s)	2474
BstZ17I	GTATAC	1 cut(s)	404
Bsu15I	ATCGAT	2 cut(s)	628, 2121
BsuRI	GGCC	5 cut(s)	165, 461, 595, 774, 2867
BsuTUI	ATCGAT	2 cut(s)	628, 2121
BtgI	CCRYGG	3 cut(s)	2616, 2701, 3571
BtsI	GCAGTG	1 cut(s)	2097
BtsIMutI	CAGTG	7 cut(s)	536, 650, 1161, 2097, 2220, 2538, 3056
Cac8I	GCNNGC	6 cut(s)	353, 463, 2053, 2514, 2835, 3296
CaiI	CAGNNNCTG	1 cut(s)	538
CciI	TCATGA	2 cut(s)	1270, 2416
CfoI	GCGC	2 cut(s)	2142, 3102
Cfr10I	RCCGGY	2 cut(s)	412, 422
Cfr13I	GGNCC	9 cut(s)	66, 164, 593, 728, 773, 945, 1406, 2866, 2871
ClaI	ATCGAT	2 cut(s)	628, 2121
CseI	GACGC	4 cut(s)	1328, 2753, 3158, 3287
CsiI	ACCWGGT	1 cut(s)	941
Csp6I	GTAC	2 cut(s)	1429, 3022
CspAI	ACCGGT	2 cut(s)	412, 422
CviQI	GTAC	2 cut(s)	1429, 3022
DpnI	GATC	9 cut(s)	297, 1256, 1299, 1773, 1980, 2120, 2476, 2715, 3577
DpnII	GATC	9 cut(s)	295, 1254, 1297, 1771, 1978, 2118, 2474, 2713, 3575
Eam1104I	CTCTTC	3 cut(s)	578, 1369, 1539
EarI	CTCTTC	3 cut(s)	578, 1369, 1539
Ecl136II	GAGCTC	2 cut(s)	1362, 2987
Eco130I	CCWWGG	6 cut(s)	948, 1580, 2616, 2701, 3216, 3429
Eco24I	GRGCYC	2 cut(s)	1364, 2989
Eco31I	GGTCTC	1 cut(s)	1213
Eco32I	GATATC	3 cut(s)	638, 1665, 3282
Eco47I	GGWCC	5 cut(s)	66, 728, 945, 1406, 2871
Eco53kI	GAGCTC	2 cut(s)	1362, 2987
Eco57I	CTGAAG	1 cut(s)	816
Eco72I	CACGTG	1 cut(s)	1131
Eco88I	CYCGRG	2 cut(s)	91, 340
Eco91I	GGTNACC	1 cut(s)	1781
EcoICRI	GAGCTC	2 cut(s)	1362, 2987
EcoO109I	RGGNCCY	2 cut(s)	66, 1406
EcoO65I	GGTNACC	1 cut(s)	1781
EcoRI	GAATTC	1 cut(s)	1549
EcoRII	CCWGG	6 cut(s)	75, 927, 941, 1306, 1810, 2664
EcoRV	GATATC	3 cut(s)	638, 1665, 3282
EcoT14I	CCWWGG	6 cut(s)	948, 1580, 2616, 2701, 3216, 3429
EcoT38I	GRGCYC	2 cut(s)	1364, 2989
ErhI	CCWWGG	6 cut(s)	948, 1580, 2616, 2701, 3216, 3429
FalI	AAGNNNNNCTT	2 cut(s)	1463, 1495
FaqI	GGGAC	4 cut(s)	79, 1287, 1392, 3258
FauNDI	CATATG	1 cut(s)	1906
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	2 cut(s)	403, 3172
FriOI	GRGCYC	2 cut(s)	1364, 2989
FspBI	CTAG	8 cut(s)	33, 474, 1526, 2244, 2277, 2388, 2637, 3390
FspI	TGCGCA	1 cut(s)	3101
GlaI	GCGC	2 cut(s)	2141, 3101
GsaI	CCCAGC	1 cut(s)	2944
GsuI	CTGGAG	2 cut(s)	1005, 1659
HaeIII	GGCC	5 cut(s)	165, 461, 595, 774, 2867
HapII	CCGG	5 cut(s)	413, 423, 2849, 2869, 3025
HgaI	GACGC	4 cut(s)	1328, 2753, 3158, 3287
HhaI	GCGC	2 cut(s)	2142, 3102
Hin1I	GRCGYC	2 cut(s)	1339, 2888
Hin6I	GCGC	2 cut(s)	2140, 3100
HinP1I	GCGC	2 cut(s)	2140, 3100
HpaII	CCGG	5 cut(s)	413, 423, 2849, 2869, 3025
HphI	GGTGA	9 cut(s)	733, 1029, 1250, 1793, 1797, 1839, 3103, 3461, 3506
Hpy166II	GTNNAC	8 cut(s)	404, 683, 1523, 1539, 2612, 2625, 2780, 3173
Hpy8I	GTNNAC	8 cut(s)	404, 683, 1523, 1539, 2612, 2625, 2780, 3173
HpyAV	CCTTC	7 cut(s)	185, 1044, 1179, 1702, 1878, 2401, 2578
HpyCH4IV	ACGT	5 cut(s)	1130, 2238, 2888, 3175, 3376
HpySE526I	ACGT	5 cut(s)	1130, 2238, 2888, 3175, 3376
Hsp92I	GRCGYC	2 cut(s)	1339, 2888
HspAI	GCGC	2 cut(s)	2140, 3100
KflI	GGGWCCC	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	9 cut(s)	295, 1254, 1297, 1771, 1978, 2118, 2474, 2713, 3575
LguI	GCTCTTC	1 cut(s)	1369
LmnI	GCTCC	6 cut(s)	1325, 1584, 1901, 2761, 3186, 3220
Lsp1109I	GCAGC	7 cut(s)	190, 345, 2387, 2849, 3103, 3336, 3475
MabI	ACCWGGT	1 cut(s)	941
MaeI	CTAG	8 cut(s)	33, 474, 1526, 2244, 2277, 2388, 2637, 3390
MaeII	ACGT	5 cut(s)	1130, 2238, 2888, 3175, 3376
MalI	GATC	9 cut(s)	297, 1256, 1299, 1773, 1980, 2120, 2476, 2715, 3577
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	9 cut(s)	295, 1254, 1297, 1771, 1978, 2118, 2474, 2713, 3575
MfeI	CAATTG	3 cut(s)	1460, 2783, 3550
MflI	RGATCY	1 cut(s)	2474
MhlI	GDGCHC	5 cut(s)	347, 1364, 2627, 2923, 2989
MlyI	GAGTC	4 cut(s)	334, 440, 776, 1809
MmeI	TCCRAC	7 cut(s)	1017, 1036, 1474, 1888, 2375, 2552, 3238
MroXI	GAANNNNTTC	4 cut(s)	278, 1650, 1887, 3267
MslI	CAYNNNNRTG	7 cut(s)	630, 1213, 1767, 1944, 2330, 3049, 3408
MspA1I	CMGCKG	2 cut(s)	3116, 3184
MspI	CCGG	5 cut(s)	413, 423, 2849, 2869, 3025
MspR9I	CCNGG	8 cut(s)	77, 929, 943, 1308, 1812, 2666, 2849, 2869
MunI	CAATTG	3 cut(s)	1460, 2783, 3550
Mva1269I	GAATGC	5 cut(s)	1062, 1107, 1141, 2266, 2389
MvaI	CCWGG	6 cut(s)	77, 929, 943, 1308, 1812, 2666
MvnI	CGCG	1 cut(s)	3294
NciI	CCSGG	2 cut(s)	2849, 2869
NcoI	CCATGG	2 cut(s)	2616, 2701
NdeI	CATATG	1 cut(s)	1906
NdeII	GATC	9 cut(s)	295, 1254, 1297, 1771, 1978, 2118, 2474, 2713, 3575
NlaIV	GGNNCC	7 cut(s)	67, 68, 1408, 2476, 2500, 3222, 3569
NmuCI	GTSAC	9 cut(s)	534, 799, 1126, 1238, 1610, 1781, 1845, 2084, 2958
NsbI	TGCGCA	1 cut(s)	3101
NspI	RCATGY	3 cut(s)	399, 1017, 2055
NspV	TTCGAA	2 cut(s)	609, 3560
PaeI	GCATGC	1 cut(s)	2055
PaeR7I	CTCGAG	1 cut(s)	340
PagI	TCATGA	2 cut(s)	1270, 2416
PciI	ACATGT	2 cut(s)	395, 1013
PciSI	GCTCTTC	1 cut(s)	1369
PctI	GAATGC	5 cut(s)	1062, 1107, 1141, 2266, 2389
PdmI	GAANNNNTTC	4 cut(s)	278, 1650, 1887, 3267
PflFI	GACNNNGTC	1 cut(s)	943
PfoI	TCCNGGA	1 cut(s)	2664
PinAI	ACCGGT	2 cut(s)	412, 422
PleI	GAGTC	4 cut(s)	333, 440, 775, 1809
PmaCI	CACGTG	1 cut(s)	1131
PmlI	CACGTG	1 cut(s)	1131
PpsI	GAGTC	4 cut(s)	333, 440, 775, 1809
Ppu21I	YACGTR	1 cut(s)	1131
PpuMI	RGGWCCY	2 cut(s)	66, 1406
PscI	ACATGT	2 cut(s)	395, 1013
PshBI	ATTAAT	2 cut(s)	254, 2934
PsiI	TTATAA	2 cut(s)	3437, 3516
Psp124BI	GAGCTC	2 cut(s)	1364, 2989
Psp5II	RGGWCCY	2 cut(s)	66, 1406
Psp6I	CCWGG	6 cut(s)	75, 927, 941, 1306, 1810, 2664
PspCI	CACGTG	1 cut(s)	1131
PspEI	GGTNACC	1 cut(s)	1781
PspFI	CCCAGC	1 cut(s)	2940
PspGI	CCWGG	6 cut(s)	75, 927, 941, 1306, 1810, 2664
PspN4I	GGNNCC	7 cut(s)	67, 68, 1408, 2476, 2500, 3222, 3569
PspPI	GGNCC	9 cut(s)	66, 164, 593, 728, 773, 945, 1406, 2866, 2871
PspPPI	RGGWCCY	2 cut(s)	66, 1406
PstI	CTGCAG	2 cut(s)	1645, 2104
PstNI	CAGNNNCTG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	2474
PsyI	GACNNNGTC	1 cut(s)	943
RsaI	GTAC	2 cut(s)	1430, 3023
RsaNI	GTAC	2 cut(s)	1429, 3022
RseI	CAYNNNNRTG	7 cut(s)	630, 1213, 1767, 1944, 2330, 3049, 3408
SacI	GAGCTC	2 cut(s)	1364, 2989
SapI	GCTCTTC	1 cut(s)	1369
Sau3AI	GATC	9 cut(s)	295, 1254, 1297, 1771, 1978, 2118, 2474, 2713, 3575
Sau96I	GGNCC	9 cut(s)	66, 164, 593, 728, 773, 945, 1406, 2866, 2871
SchI	GAGTC	4 cut(s)	334, 440, 776, 1809
ScrFI	CCNGG	8 cut(s)	77, 929, 943, 1308, 1812, 2666, 2849, 2869
SduI	GDGCHC	5 cut(s)	347, 1364, 2627, 2923, 2989
SexAI	ACCWGGT	1 cut(s)	941
SfcI	CTRYAG	3 cut(s)	1641, 1914, 2100
Sfr274I	CTCGAG	1 cut(s)	340
SfuI	TTCGAA	2 cut(s)	609, 3560
SinI	GGWCC	5 cut(s)	66, 728, 945, 1406, 2871
SlaI	CTCGAG	1 cut(s)	340
SmiMI	CAYNNNNRTG	7 cut(s)	630, 1213, 1767, 1944, 2330, 3049, 3408
SmlI	CTYRAG	2 cut(s)	340, 2828
SmoI	CTYRAG	2 cut(s)	340, 2828
SpeI	ACTAGT	2 cut(s)	473, 1525
SphI	GCATGC	1 cut(s)	2055
SsiI	CCGC	7 cut(s)	126, 162, 1927, 2152, 2775, 3114, 3184
SspI	AATATT	2 cut(s)	1166, 1567
SspMI	CTAG	8 cut(s)	33, 474, 1526, 2244, 2277, 2388, 2637, 3390
SstI	GAGCTC	2 cut(s)	1364, 2989
StyD4I	CCNGG	8 cut(s)	75, 927, 941, 1306, 1810, 2664, 2847, 2867
StyI	CCWWGG	6 cut(s)	948, 1580, 2616, 2701, 3216, 3429
TaiI	ACGT	5 cut(s)	1133, 2241, 2891, 3178, 3379
TaqI	TCGA	8 cut(s)	341, 609, 628, 2121, 2707, 2747, 3228, 3560
TaqII	GACCGA	1 cut(s)	1499
TatI	WGTACW	1 cut(s)	1428
TauI	GCSGC	2 cut(s)	165, 3116
TscAI	CASTG	7 cut(s)	543, 657, 1161, 2104, 2220, 2545, 3056
TseFI	GTSAC	9 cut(s)	534, 799, 1126, 1238, 1610, 1781, 1845, 2084, 2958
TseI	GCWGC	8 cut(s)	12, 178, 333, 2375, 2837, 3116, 3324, 3488
Tsp45I	GTSAC	9 cut(s)	534, 799, 1126, 1238, 1610, 1781, 1845, 2084, 2958
TspGWI	ACGGA	1 cut(s)	2024
TspRI	CASTG	7 cut(s)	543, 657, 1161, 2104, 2220, 2545, 3056
Tth111I	GACNNNGTC	1 cut(s)	943
VneI	GTGCAC	1 cut(s)	2623
VpaK11BI	GGWCC	5 cut(s)	66, 728, 945, 1406, 2871
VspI	ATTAAT	2 cut(s)	254, 2934
XapI	RAATTY	6 cut(s)	361, 616, 746, 1275, 1549, 1859
XceI	RCATGY	3 cut(s)	399, 1017, 2055
XcmI	CCANNNNNNNNNTGG	1 cut(s)	827
XhoI	CTCGAG	1 cut(s)	340
XmiI	GTMKAC	2 cut(s)	403, 3172
XmnI	GAANNNNTTC	4 cut(s)	278, 1650, 1887, 3267
XspI	CTAG	8 cut(s)	33, 474, 1526, 2244, 2277, 2388, 2637, 3390
ZraI	GACGTC	1 cut(s)	2889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.