Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8471317.1

Orthogroup ID

OG0002113

Physical Location & Seq

Genomic Coordinates Forward (+)

347 .. 2020

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8471317.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 823 bp

atggagatgagctgccagtcaaatggcaattctagtgatattcaacagctctgtaactctggggggaccccataccaggacaagacttactcaggctatatgcctcctcctcctccttttgtgagcggatggatgtatgttaatgaacaaggacaaatgtgcggcccatatattcagcagcagttatttgaaggtttatctactggttttttgccagatgagcttcctgtatatcctgtggtaaatggggcattaataaacccaataccattgaagtatttcaagcagttccctgatcatgttgctactgggtttgcatatctgagtctgggcagcatctcgagcacaagcacgcctacaaattctcttaaatcttgcaatggggatttggctacatgtagtatacctacaccggttgctaccggttatcctgatttacagtatgactccacttcacaggccagctacgacactagtgtttccaataagctgatattgaactccaaagcacctaatcaagttacttcaaatcagtcactgtcaagtaaagattcttgctggttgtatgaggatgaggaagggaagagaaatgggccatattctcttttcgaattaaattcttggcatcgatatggatatcttcgggattcactgacgatttatcatgtcaagaacaagtgtaaacctttcacgctgtcatcggttctcaattcatggaaacttgatggacctgaaaccatcaccaaatttgatgccaaatgtaatgagtctggcccattgggaagcattatatctgaagtcacagagggagtttcttcccaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009909 GO:0009987 GO:0010228 GO:0010452 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0051568 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

274

Amino Acids

30.04

Weight (kDa)

4.85

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400 AT5G42400
fragaria_vesca	FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810 FvH4_5g26810
malus_domestica	MD02G1278400.v1.1 MD07G1046400.v1.1 MD07G1046500.v1.1
prunus_persica	Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1 Prupe.2G042400_v2.0.a1
pyrus_communis	pycom02g23860
rosa_chinensis	RchiOBHm_Chr7g0217731
rosa_laevigata	RLG00000002444
rosa_multiflora	Rmu_co8471317.1_g000001 Rmu_sc0000202.1_g000011
rosa_roxburghii	Rroxscaffold_3G00241740
rosa_rugosa	Rorug07G0170800 Rorug07G0170800
rosa_samantha	Rh7AG311300 Rh7BG303200 Rh7CG330300 Rh7DG311100
rosa_wichuraiana	Rw7G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	403
AciI	CCGC	2 cut(s)	126, 162
AcsI	RAATTY	3 cut(s)	361, 616, 746
AcuI	CTGAAG	1 cut(s)	816
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflIII	ACRYGT	1 cut(s)	395
AgeI	ACCGGT	2 cut(s)	412, 422
AgsI	TTSAA	6 cut(s)	44, 191, 274, 283, 499, 528
AhlI	ACTAGT	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	5 cut(s)	12, 49, 223, 465, 490
AluI	AGCT	5 cut(s)	12, 49, 223, 465, 490
Alw21I	GWGCWC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	538
Ama87I	CYCGRG	1 cut(s)	340
AoxI	GGCC	4 cut(s)	163, 459, 593, 772
ApeKI	GCWGC	3 cut(s)	12, 178, 333
ApoI	RAATTY	3 cut(s)	361, 616, 746
AseI	ATTAAT	1 cut(s)	254
AsiGI	ACCGGT	2 cut(s)	412, 422
Asp700I	GAANNNNTTC	1 cut(s)	278
AspS9I	GGNCC	5 cut(s)	66, 164, 593, 728, 773
AsuHPI	GGTGA	1 cut(s)	733
AsuII	TTCGAA	1 cut(s)	609
AvaI	CYCGRG	1 cut(s)	340
AvaII	GGWCC	2 cut(s)	66, 728
Bbv12I	GWGCWC	1 cut(s)	347
BbvI	GCAGC	2 cut(s)	190, 345
BccI	CCATC	3 cut(s)	123, 719, 746
BciT130I	CCWGG	1 cut(s)	77
BclI	TGATCA	1 cut(s)	295
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	2 cut(s)	33, 474
BisI	GCNGC	4 cut(s)	13, 163, 179, 334
BlsI	GCNGC	4 cut(s)	14, 164, 180, 335
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	2 cut(s)	66, 728
BmeT110I	CYCGRG	1 cut(s)	340
BmgT120I	GGNCC	5 cut(s)	66, 164, 593, 728, 773
BmiI	GGNNCC	2 cut(s)	67, 68
BmrFI	CCNGG	1 cut(s)	77
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	3 cut(s)	345, 634, 742
BmuI	ACTGGG	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	609
Bsa29I	ATCGAT	1 cut(s)	628
BsaWI	WCCGGW	2 cut(s)	412, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	2 cut(s)	412, 422
Bse1I	ACTGG	3 cut(s)	16, 208, 313
Bse3DI	GCAATG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	77
BseCI	ATCGAT	1 cut(s)	628
BseGI	GGATG	3 cut(s)	134, 138, 577
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	105, 314
BseNI	ACTGG	3 cut(s)	16, 208, 313
BseRI	GAGGAG	3 cut(s)	96, 99, 102
BseXI	GCAGC	2 cut(s)	190, 345
BshFI	GGCC	4 cut(s)	165, 461, 595, 774
BshTI	ACCGGT	2 cut(s)	412, 422
BshVI	ATCGAT	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	347
BsiHKCI	CYCGRG	1 cut(s)	340
BsiSI	CCGG	2 cut(s)	413, 423
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	4 cut(s)	165, 461, 595, 774
BsoBI	CYCGRG	1 cut(s)	340
Bsp119I	TTCGAA	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	2 cut(s)	126, 162
BspANI	GGCC	4 cut(s)	165, 461, 595, 774
BspCNI	CTCAG	2 cut(s)	104, 315
BspDI	ATCGAT	1 cut(s)	628
BspLI	GGNNCC	2 cut(s)	67, 68
BspT104I	TTCGAA	1 cut(s)	609
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	385
BsrFI	RCCGGY	2 cut(s)	412, 422
BsrI	ACTGG	3 cut(s)	16, 208, 313
BssAI	RCCGGY	2 cut(s)	412, 422
BssMI	GATC	1 cut(s)	295
BssNAI	GTATAC	1 cut(s)	404
Bst1107I	GTATAC	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	441, 540
Bst6I	CTCTTC	1 cut(s)	578
BstBI	TTCGAA	1 cut(s)	609
BstC8I	GCNNGC	2 cut(s)	353, 463
BstDEI	CTNAG	2 cut(s)	91, 323
BstF5I	GGATG	3 cut(s)	134, 138, 577
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 342
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	190, 345
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstZ17I	GTATAC	1 cut(s)	404
Bsu15I	ATCGAT	1 cut(s)	628
BsuRI	GGCC	4 cut(s)	165, 461, 595, 774
BsuTUI	ATCGAT	1 cut(s)	628
BtsCI	GGATG	3 cut(s)	134, 138, 577
BtsIMutI	CAGTG	2 cut(s)	536, 650
Cac8I	GCNNGC	2 cut(s)	353, 463
CaiI	CAGNNNCTG	1 cut(s)	538
Cfr10I	RCCGGY	2 cut(s)	412, 422
Cfr13I	GGNCC	5 cut(s)	66, 164, 593, 728, 773
ClaI	ATCGAT	1 cut(s)	628
CspAI	ACCGGT	2 cut(s)	412, 422
CviAII	CATG	4 cut(s)	299, 396, 665, 714
DdeI	CTNAG	2 cut(s)	91, 323
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	578
Eco32I	GATATC	1 cut(s)	638
Eco47I	GGWCC	2 cut(s)	66, 728
Eco57I	CTGAAG	1 cut(s)	816
Eco88I	CYCGRG	1 cut(s)	340
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	75
EcoRV	GATATC	1 cut(s)	638
FaeI	CATG	4 cut(s)	302, 399, 668, 717
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	4 cut(s)	298, 395, 664, 713
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	4 cut(s)	13, 163, 179, 334
FokI	GGATG	3 cut(s)	141, 145, 584
Fsp4HI	GCNGC	4 cut(s)	13, 163, 179, 334
FspBI	CTAG	2 cut(s)	33, 474
GluI	GCNGC	4 cut(s)	13, 163, 179, 334
HaeIII	GGCC	4 cut(s)	165, 461, 595, 774
HapII	CCGG	2 cut(s)	413, 423
Hin1II	CATG	4 cut(s)	302, 399, 668, 717
HinfI	GANTC	5 cut(s)	325, 446, 551, 647, 767
HpaII	CCGG	2 cut(s)	413, 423
HphI	GGTGA	1 cut(s)	733
Hpy166II	GTNNAC	2 cut(s)	404, 683
Hpy188I	TCNGA	2 cut(s)	324, 796
Hpy188III	TCNNGA	4 cut(s)	340, 431, 644, 670
Hpy8I	GTNNAC	2 cut(s)	404, 683
HpyAV	CCTTC	2 cut(s)	185, 572
HpyCH4III	ACNGT	2 cut(s)	441, 540
HpyCH4V	TGCA	2 cut(s)	317, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 342
HpyF3I	CTNAG	2 cut(s)	91, 323
Hsp92II	CATG	4 cut(s)	302, 399, 668, 717
KflI	GGGWCCC	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	295
Lsp1109I	GCAGC	2 cut(s)	190, 345
LweI	GCATC	3 cut(s)	345, 634, 742
MaeI	CTAG	2 cut(s)	33, 474
MaeIII	GTNAC	4 cut(s)	53, 520, 534, 799
MalI	GATC	1 cut(s)	297
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	1 cut(s)	295
MboII	GAAGA	3 cut(s)	595, 632, 807
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	6 cut(s)	28, 361, 611, 616, 709, 746
MlyI	GAGTC	3 cut(s)	334, 440, 776
MnlI	CCTC	7 cut(s)	114, 117, 120, 123, 562, 568, 799
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	4 cut(s)	141, 254, 369, 614
MslI	CAYNNNNRTG	1 cut(s)	630
MspI	CCGG	2 cut(s)	413, 423
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	220, 342
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	302, 399, 668, 717
NlaIV	GGNNCC	2 cut(s)	67, 68
NmuCI	GTSAC	2 cut(s)	534, 799
NspI	RCATGY	1 cut(s)	399
NspV	TTCGAA	1 cut(s)	609
PaeR7I	CTCGAG	1 cut(s)	340
PciI	ACATGT	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	551, 647
PinAI	ACCGGT	2 cut(s)	412, 422
PkrI	GCNGC	4 cut(s)	14, 164, 180, 335
PleI	GAGTC	3 cut(s)	333, 440, 775
PpsI	GAGTC	3 cut(s)	333, 440, 775
PpuMI	RGGWCCY	1 cut(s)	66
PscI	ACATGT	1 cut(s)	395
PshBI	ATTAAT	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	67, 68
PspPI	GGNCC	5 cut(s)	66, 164, 593, 728, 773
PspPPI	RGGWCCY	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	630
SaqAI	TTAA	4 cut(s)	141, 254, 369, 614
SatI	GCNGC	4 cut(s)	13, 163, 179, 334
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	5 cut(s)	66, 164, 593, 728, 773
SchI	GAGTC	3 cut(s)	334, 440, 776
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	347
SfaNI	GCATC	3 cut(s)	345, 634, 742
Sfr274I	CTCGAG	1 cut(s)	340
SfuI	TTCGAA	1 cut(s)	609
SinI	GGWCC	2 cut(s)	66, 728
SlaI	CTCGAG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	6 cut(s)	28, 361, 611, 616, 709, 746
SsiI	CCGC	2 cut(s)	126, 162
SspMI	CTAG	2 cut(s)	33, 474
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	441, 540
TaqI	TCGA	3 cut(s)	341, 609, 628
TasI	AATT	6 cut(s)	28, 361, 611, 616, 709, 746
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	551, 647
Tru1I	TTAA	4 cut(s)	141, 254, 369, 614
Tru9I	TTAA	4 cut(s)	141, 254, 369, 614
TscAI	CASTG	2 cut(s)	543, 657
TseFI	GTSAC	2 cut(s)	534, 799
TseI	GCWGC	3 cut(s)	12, 178, 333
Tsp45I	GTSAC	2 cut(s)	534, 799
TspDTI	ATGAA	2 cut(s)	159, 702
TspRI	CASTG	2 cut(s)	543, 657
VpaK11BI	GGWCC	2 cut(s)	66, 728
VspI	ATTAAT	1 cut(s)	254
XapI	RAATTY	3 cut(s)	361, 616, 746
XceI	RCATGY	1 cut(s)	399
XhoI	CTCGAG	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	2 cut(s)	33, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.