FvH4_5g28470

splicing factor 3A subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
19646768 .. 19650701
3934 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28470.t1

Sequence Viewer

Length: 1290 bp
ATGATCGATACCATCTCCTCCACCGCACAAAGACTCATTGAGATCTATGAGGATAACGATAATGCCAGGAAGGACGAGATTGCAGCTCTCGGAGGCCAAACTGCCACCGGCACCAATGTGTTCAGTGCATTCTATGATCGATTGAAAGAGATCCGTGAGTACCATAGGAGACATCCAGCTGCACTAGTTGTTGATGCTAATGAGGAGCATGAAGCACTGCTCAAGGAGGGGCCTCAAGTTGAGAGATATCGTATATTTTGTGTTGTTATTTTCACATATTCATTAAGGAAGCCTATGGACGGACGATACCTGGATTTACATGAACTGTACAATCAGTATATCAAGAGCCCATCGAGTACTCTGCTTACCTTGATGTTTTTTCACAACCACATAAGATTCCTCGGAAGCTCAAGTCTACAAGGCAGTACAGGGAATATATTGAGAATCTTGTTCAGTATCTGGTATATTTCTTCCACCGGACAGAGCCATTGCAAGATCTTGATAGAATATTTGCAAAGGTTGAAGCTGAATTTGAAGAACAATGGGCAGATGCTAAAGGAGGCATTGGCTTCGATGGGACTGAAAGTAGGCGGTACCATACAGCAACGTGCAGAGATGCTTTTACTTACAAAGGACACACCTCTGGAAAAGTTGGACAAGATGCACTTTGCCAAAGGGTCACGTGGTTCAGCACAGAATGGGGCTGCTGTAGCTCCACAGCAAGTTGGCATGTTCAAAGAAATTGCTTTCTTGGAAGCCAAATTGAAAAAATCAAGTGACTTACCTAGTGAGGCTATTGAACGAACAAAAGACAACATTGTCAAGAAACAGGCTTTGACATATGAAGAAATTGCAGCAGAACGTGAGGATGAAGAGACACAGGCTGATACTGAAAGTGATGACGATGAGCAGCAGATTTATAATCCACTCAAATTGCCAATGGGTTGGGATGGGAAGCCCATACCTTACTGGCTGTATAAGCTTCATGGTCTTGGTCAGGAATTCAAGTGTGAGATATGTGGGAATCAGAGTTATTGGGGGCGTAGAGCTTTTGAGCGGCATTTTAAGGAATGGCGCCATCAGCATGGAATGCGTTGCCTTGGTATACCAAACACCAAGAACTTTCATGAGATCACATCGAGGAAGCAGAAGAATTGTGGAAGAGGATACAAGCACGGCAAAGGGGTGAACAAGTGGCGCCCAGACCTTGAAGAAGAGTATGAAGACAGAGAGGGAAACATCTATAATAAGAAGACATATACTGATCTGCAGCGACAGGGACTAATATAA

Protein Analysis

430

Amino Acids

49.51

Weight (kDa)

8.32

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SF3a60_bindingd PF12108 34 - 59 3.5e-12 Splicing factor SF3a60 binding domain
SDE2_2C PF13297 184 - 225 9.5e-13 Replication stress response SDE2 C-terminal
SF3a60_Prp9_C PF11931 311 - 429 6.3e-49 SF3a60/Prp9 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 921
AasI GACNNNNNNGTC 1 cut(s) 818
Acc65I GGTACC 1 cut(s) 593
AccB1I GGYRCC 4 cut(s) 110, 593, 1074, 1197
AccBSI CCGCTC 1 cut(s) 1057
AccI GTMKAC 2 cut(s) 415, 1105
AciI CCGC 3 cut(s) 24, 591, 1057
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 2 cut(s) 529, 1001
AcvI CACGTG 1 cut(s) 683
AcyI GRCGYC 2 cut(s) 1075, 1198
AfaI GTAC 5 cut(s) 161, 329, 358, 427, 595
AfiI CCNNNNNNNGG 1 cut(s) 299
AgsI TTSAA 8 cut(s) 145, 523, 535, 736, 766, 800, 1006, 1211
AhlI ACTAGT 1 cut(s) 184
AjnI CCWGG 2 cut(s) 65, 309
AleI CACNNNNGTG 1 cut(s) 116
AluBI AGCT 7 cut(s) 86, 179, 408, 526, 713, 982, 1049
AluI AGCT 7 cut(s) 86, 179, 408, 526, 713, 982, 1049
Alw26I GTCTC 2 cut(s) 163, 869
AlwI GGATC 1 cut(s) 145
AlwNI CAGNNNCTG 1 cut(s) 459
AoxI GGCC 2 cut(s) 94, 230
ApeKI GCWGC 6 cut(s) 83, 179, 704, 854, 910, 1270
ApoI RAATTY 2 cut(s) 529, 1001
Asp718I GGTACC 1 cut(s) 593
AspLEI GCGC 2 cut(s) 1077, 1200
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 1198
BanI GGYRCC 4 cut(s) 110, 593, 1074, 1197
BanII GRGCYC 1 cut(s) 350
BbrPI CACGTG 1 cut(s) 683
BbsI GAAGAC 2 cut(s) 1230, 1259
BbvI GCAGC 6 cut(s) 95, 166, 691, 866, 922, 1282
BccI CCATC 5 cut(s) 20, 358, 568, 944, 1086
BceAI ACGGC 1 cut(s) 1192
BcgI CGANNNNNNTGC 4 cut(s) 343, 377, 552, 586
BciT130I CCWGG 2 cut(s) 67, 311
BciVI GTATCC 1 cut(s) 1160
BcoDI GTCTC 2 cut(s) 163, 869
BcuI ACTAGT 1 cut(s) 184
BfaI CTAG 2 cut(s) 185, 786
BfmI CTRYAG 2 cut(s) 708, 1268
BfoI RGCGCY 2 cut(s) 1078, 1201
BfuI GTATCC 1 cut(s) 1160
BglII AGATCT 2 cut(s) 42, 495
BisI GCNGC 7 cut(s) 84, 180, 705, 855, 911, 1058, 1271
BlsI GCNGC 7 cut(s) 85, 181, 706, 856, 912, 1059, 1272
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 2 cut(s) 67, 311
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 5 cut(s) 112, 231, 595, 1076, 1199
BmrFI CCNGG 2 cut(s) 67, 311
BmsI GCATC 4 cut(s) 184, 540, 606, 651
BpiI GAAGAC 2 cut(s) 1230, 1259
BpuEI CTTGAG 3 cut(s) 206, 219, 394
Bsa29I ATCGAT 2 cut(s) 6, 139
BsaAI YACGTR 1 cut(s) 683
BsaHI GRCGYC 2 cut(s) 1075, 1198
BsaJI CCNNGG 2 cut(s) 400, 1099
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 974
Bse3DI GCAATG 1 cut(s) 487
BseBI CCWGG 2 cut(s) 67, 311
BseCI ATCGAT 2 cut(s) 6, 139
BseDI CCNNGG 2 cut(s) 400, 1099
BseGI GGATG 3 cut(s) 172, 874, 955
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 487
BseNI ACTGG 1 cut(s) 974
BseRI GAGGAG 2 cut(s) 7, 218
BseXI GCAGC 6 cut(s) 95, 166, 691, 866, 922, 1282
BsgI GTGCAG 2 cut(s) 165, 630
BshFI GGCC 2 cut(s) 96, 232
BshNI GGYRCC 4 cut(s) 110, 593, 1074, 1197
BshVI ATCGAT 2 cut(s) 6, 139
BsiSI CCGG 2 cut(s) 108, 477
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 2 cut(s) 163, 869
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 2 cut(s) 128, 1095
BsnI GGCC 2 cut(s) 96, 232
Bsp1286I GDGCHC 1 cut(s) 350
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 7 cut(s) 3, 42, 136, 150, 495, 1131, 1264
BspACI CCGC 3 cut(s) 24, 591, 1057
BspANI GGCC 2 cut(s) 96, 232
BspDI ATCGAT 2 cut(s) 6, 139
BspHI TCATGA 1 cut(s) 1126
BspLI GGNNCC 5 cut(s) 112, 231, 595, 1076, 1199
BspMAI CTGCAG 1 cut(s) 1272
BspPI GGATC 1 cut(s) 145
BspT107I GGYRCC 4 cut(s) 110, 593, 1074, 1197
BsrBI CCGCTC 1 cut(s) 1057
BsrDI GCAATG 1 cut(s) 487
BsrFI RCCGGY 1 cut(s) 107
BsrGI TGTACA 1 cut(s) 327
BsrI ACTGG 1 cut(s) 974
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 400, 1099
BssMI GATC 7 cut(s) 3, 42, 136, 150, 495, 1131, 1264
BssNAI GTATAC 1 cut(s) 1106
BssNI GRCGYC 2 cut(s) 1075, 1198
BssT1I CCWWGG 1 cut(s) 1099
Bst1107I GTATAC 1 cut(s) 1106
Bst2UI CCWGG 2 cut(s) 67, 311
Bst4CI ACNGT 1 cut(s) 327
Bst6I CTCTTC 3 cut(s) 867, 1156, 1209
BstACI GRCGYC 2 cut(s) 1075, 1198
BstAPI GCANNNNNTGC 1 cut(s) 1090
BstAUI TGTACA 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 683
BstF5I GGATG 3 cut(s) 172, 874, 955
BstH2I RGCGCY 2 cut(s) 1078, 1201
BstHHI GCGC 2 cut(s) 1077, 1200
BstKTI GATC 7 cut(s) 6, 45, 139, 153, 498, 1134, 1267
BstMAI GTCTC 2 cut(s) 163, 869
BstMBI GATC 7 cut(s) 3, 42, 136, 150, 495, 1131, 1264
BstMWI GCNNNNNNNGC 4 cut(s) 710, 979, 1081, 1090
BstNI CCWGG 2 cut(s) 67, 311
BstNSI RCATGY 1 cut(s) 733
BstSCI CCNGG 2 cut(s) 65, 309
BstSFI CTRYAG 2 cut(s) 708, 1268
BstV1I GCAGC 6 cut(s) 95, 166, 691, 866, 922, 1282
BstV2I GAAGAC 2 cut(s) 1230, 1259
BstX2I RGATCY 3 cut(s) 42, 150, 495
BstXI CCANNNNNNTGG 2 cut(s) 945, 1085
BstYI RGATCY 3 cut(s) 42, 150, 495
BstZ17I GTATAC 1 cut(s) 1106
Bsu15I ATCGAT 2 cut(s) 6, 139
BsuI GTATCC 1 cut(s) 1160
BsuRI GGCC 2 cut(s) 96, 232
BsuTUI ATCGAT 2 cut(s) 6, 139
BtsCI GGATG 3 cut(s) 172, 874, 955
BtsI GCAGTG 1 cut(s) 215
BtsIMutI CAGTG 2 cut(s) 130, 215
CaiI CAGNNNCTG 1 cut(s) 459
CciI TCATGA 1 cut(s) 1126
CfoI GCGC 2 cut(s) 1077, 1200
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 230
ClaI ATCGAT 2 cut(s) 6, 139
Csp6I GTAC 5 cut(s) 160, 328, 357, 426, 594
CspCI CAANNNNNGTGG 2 cut(s) 915, 950
CviAII CATG 6 cut(s) 209, 320, 730, 986, 1085, 1127
CviQI GTAC 5 cut(s) 160, 328, 357, 426, 594
DinI GGCGCC 2 cut(s) 1076, 1199
DpnI GATC 7 cut(s) 5, 44, 138, 152, 497, 1133, 1266
DpnII GATC 7 cut(s) 3, 42, 136, 150, 495, 1131, 1264
DrdI GACNNNNNNGTC 1 cut(s) 818
DseDI GACNNNNNNGTC 1 cut(s) 818
Eam1104I CTCTTC 3 cut(s) 867, 1156, 1209
EarI CTCTTC 3 cut(s) 867, 1156, 1209
Eco130I CCWWGG 1 cut(s) 1099
Eco24I GRGCYC 1 cut(s) 350
Eco32I GATATC 1 cut(s) 248
Eco72I CACGTG 1 cut(s) 683
EcoO109I RGGNCCY 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 1001
EcoRII CCWGG 2 cut(s) 65, 309
EcoRV GATATC 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 1099
EcoT38I GRGCYC 1 cut(s) 350
EgeI GGCGCC 2 cut(s) 1076, 1199
EheI GGCGCC 2 cut(s) 1076, 1199
ErhI CCWWGG 1 cut(s) 1099
FaeI CATG 6 cut(s) 212, 323, 733, 989, 1088, 1130
FalI AAGNNNNNCTT 2 cut(s) 650, 682
FaqI GGGAC 1 cut(s) 591
FatI CATG 6 cut(s) 208, 319, 729, 985, 1084, 1126
FauNDI CATATG 1 cut(s) 841
FblI GTMKAC 2 cut(s) 415, 1105
Fnu4HI GCNGC 7 cut(s) 84, 180, 705, 855, 911, 1058, 1271
FokI GGATG 3 cut(s) 159, 881, 962
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 7 cut(s) 84, 180, 705, 855, 911, 1058, 1271
FspBI CTAG 2 cut(s) 185, 786
GlaI GCGC 2 cut(s) 1076, 1199
GluI GCNGC 7 cut(s) 84, 180, 705, 855, 911, 1058, 1271
HaeII RGCGCY 2 cut(s) 1078, 1201
HaeIII GGCC 2 cut(s) 96, 232
HapII CCGG 2 cut(s) 108, 477
HhaI GCGC 2 cut(s) 1077, 1200
Hin1I GRCGYC 2 cut(s) 1075, 1198
Hin1II CATG 6 cut(s) 212, 323, 733, 989, 1088, 1130
Hin6I GCGC 2 cut(s) 1075, 1198
HinP1I GCGC 2 cut(s) 1075, 1198
HindIII AAGCTT 1 cut(s) 980
HinfI GANTC 4 cut(s) 33, 396, 444, 1024
HpaII CCGG 2 cut(s) 108, 477
HphI GGTGA 1 cut(s) 1198
Hpy166II GTNNAC 3 cut(s) 416, 1106, 1189
Hpy188I TCNGA 3 cut(s) 92, 404, 1029
Hpy188III TCNNGA 6 cut(s) 343, 499, 644, 823, 998, 1127
Hpy8I GTNNAC 3 cut(s) 416, 1106, 1189
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4IV ACGT 3 cut(s) 607, 682, 862
HpyCH4V TGCA 9 cut(s) 83, 128, 182, 492, 514, 611, 664, 854, 1270
HpyF10VI GCNNNNNNNGC 4 cut(s) 710, 979, 1081, 1090
HpySE526I ACGT 3 cut(s) 607, 682, 862
Hsp92I GRCGYC 2 cut(s) 1075, 1198
Hsp92II CATG 6 cut(s) 212, 323, 733, 989, 1088, 1130
HspAI GCGC 2 cut(s) 1075, 1198
KasI GGCGCC 2 cut(s) 1074, 1197
KpnI GGTACC 1 cut(s) 597
Kzo9I GATC 7 cut(s) 3, 42, 136, 150, 495, 1131, 1264
LmnI GCTCC 2 cut(s) 205, 718
Lsp1109I GCAGC 6 cut(s) 95, 166, 691, 866, 922, 1282
LweI GCATC 4 cut(s) 184, 540, 606, 651
MaeI CTAG 2 cut(s) 185, 786
MaeII ACGT 3 cut(s) 607, 682, 862
MaeIII GTNAC 2 cut(s) 678, 776
MalI GATC 7 cut(s) 5, 44, 138, 152, 497, 1133, 1266
MbiI CCGCTC 1 cut(s) 1057
MboI GATC 7 cut(s) 3, 42, 136, 150, 495, 1131, 1264
MflI RGATCY 3 cut(s) 42, 150, 495
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 7 cut(s) 529, 741, 761, 849, 932, 1001, 1153
Mly113I GGCGCC 2 cut(s) 1075, 1198
MlyI GAGTC 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 633
MseI TTAA 2 cut(s) 284, 1065
MslI CAYNNNNRTG 2 cut(s) 116, 1083
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 2 cut(s) 108, 477
MspR9I CCNGG 2 cut(s) 67, 311
Mva1269I GAATGC 2 cut(s) 128, 1095
MvaI CCWGG 2 cut(s) 67, 311
MwoI GCNNNNNNNGC 4 cut(s) 710, 979, 1081, 1090
NarI GGCGCC 2 cut(s) 1075, 1198
NdeI CATATG 1 cut(s) 841
NdeII GATC 7 cut(s) 3, 42, 136, 150, 495, 1131, 1264
NlaIII CATG 6 cut(s) 212, 323, 733, 989, 1088, 1130
NlaIV GGNNCC 5 cut(s) 112, 231, 595, 1076, 1199
NmuCI GTSAC 2 cut(s) 678, 776
NspI RCATGY 1 cut(s) 733
OliI CACNNNNGTG 1 cut(s) 116
PagI TCATGA 1 cut(s) 1126
PctI GAATGC 2 cut(s) 128, 1095
PfeI GAWTC 3 cut(s) 396, 444, 1024
PkrI GCNGC 7 cut(s) 85, 181, 706, 856, 912, 1059, 1272
PleI GAGTC 1 cut(s) 27
PluTI GGCGCC 2 cut(s) 1078, 1201
PmaCI CACGTG 1 cut(s) 683
PmlI CACGTG 1 cut(s) 683
PpsI GAGTC 1 cut(s) 27
Ppu21I YACGTR 1 cut(s) 683
PsiI TTATAA 1 cut(s) 921
Psp6I CCWGG 2 cut(s) 65, 309
PspCI CACGTG 1 cut(s) 683
PspGI CCWGG 2 cut(s) 65, 309
PspN4I GGNNCC 5 cut(s) 112, 231, 595, 1076, 1199
PspPI GGNCC 1 cut(s) 230
PstI CTGCAG 1 cut(s) 1272
PstNI CAGNNNCTG 1 cut(s) 459
PsuI RGATCY 3 cut(s) 42, 150, 495
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 5 cut(s) 161, 329, 358, 427, 595
RsaNI GTAC 5 cut(s) 160, 328, 357, 426, 594
RseI CAYNNNNRTG 2 cut(s) 116, 1083
SaqAI TTAA 2 cut(s) 284, 1065
SatI GCNGC 7 cut(s) 84, 180, 705, 855, 911, 1058, 1271
Sau3AI GATC 7 cut(s) 3, 42, 136, 150, 495, 1131, 1264
Sau96I GGNCC 1 cut(s) 230
ScaI AGTACT 1 cut(s) 358
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 2 cut(s) 67, 311
SduI GDGCHC 1 cut(s) 350
SfaNI GCATC 4 cut(s) 184, 540, 606, 651
SfcI CTRYAG 2 cut(s) 708, 1268
SfoI GGCGCC 2 cut(s) 1076, 1199
SmiMI CAYNNNNRTG 2 cut(s) 116, 1083
SmlI CTYRAG 3 cut(s) 221, 234, 409
SmoI CTYRAG 3 cut(s) 221, 234, 409
SpeI ACTAGT 1 cut(s) 184
Sse9I AATT 7 cut(s) 529, 741, 761, 849, 932, 1001, 1153
SsiI CCGC 3 cut(s) 24, 591, 1057
SspDI GGCGCC 2 cut(s) 1074, 1197
SspI AATATT 1 cut(s) 509
SspMI CTAG 2 cut(s) 185, 786
StyD4I CCNGG 2 cut(s) 65, 309
StyI CCWWGG 1 cut(s) 1099
TaaI ACNGT 1 cut(s) 327
TaiI ACGT 3 cut(s) 610, 685, 865
TaqI TCGA 5 cut(s) 6, 139, 353, 572, 1139
TasI AATT 7 cut(s) 529, 741, 761, 849, 932, 1001, 1153
TatI WGTACW 3 cut(s) 327, 356, 425
TauI GCSGC 1 cut(s) 1060
TfiI GAWTC 3 cut(s) 396, 444, 1024
Tru1I TTAA 2 cut(s) 284, 1065
Tru9I TTAA 2 cut(s) 284, 1065
TscAI CASTG 2 cut(s) 130, 222
TseFI GTSAC 2 cut(s) 678, 776
TseI GCWGC 6 cut(s) 83, 179, 704, 854, 910, 1270
Tsp45I GTSAC 2 cut(s) 678, 776
TspDTI ATGAA 8 cut(s) 225, 270, 336, 858, 885, 974, 1115, 1236
TspGWI ACGGA 2 cut(s) 143, 315
TspRI CASTG 2 cut(s) 130, 222
XapI RAATTY 2 cut(s) 529, 1001
XceI RCATGY 1 cut(s) 733
XmiI GTMKAC 2 cut(s) 415, 1105
XspI CTAG 2 cut(s) 185, 786
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.